>gb|AE012257.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 165 of
             460 of the complete genome
          Length = 13121

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 277   tttcgcaacggcgaagccggtg 298
             ||||||||||||||||||||||
Sbjct: 12323 tttcgcaacggcgaagccggtg 12344

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 277     tttcgcaacggcgaagccggtg 298
               ||||||||||||||||||||||
Sbjct: 3207120 tttcgcaacggcgaagccggtg 3207099

>emb|BX255961.5| Zebrafish DNA sequence from clone DKEY-261N6 in linkage group 9, complete
              sequence
          Length = 176428

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 29     ataacattatacagtatatca 49
              |||||||||||||||||||||
Sbjct: 160516 ataacattatacagtatatca 160536

>ref|XM_481274.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1548

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 260 gaatgatatcatgccttttt 279
           ||||||||||||||||||||
Sbjct: 502 gaatgatatcatgccttttt 483

>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12
          Length = 333800

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  cggcgaagccggtgatgaac 304
            ||||||||||||||||||||
Sbjct: 1557 cggcgaagccggtgatgaac 1538

>gb|AC121857.2| Mus musculus BAC clone RP24-98A9 from 1, complete sequence
          Length = 171124

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     aaggttttttcttttcttcc 26
             ||||||||||||||||||||
Sbjct: 36330 aaggttttttcttttcttcc 36349

>emb|AL590304.2| Human DNA sequence from clone RP11-252B20 on chromosome 13 Contains a
              spermatogenesis associated 2 (SPATA2) pseudogene, complete
              sequence
          Length = 116874

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     ataacattatacagtatatc 48
              ||||||||||||||||||||
Sbjct: 110114 ataacattatacagtatatc 110095

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 285     cggcgaagccggtgatgaac 304
               ||||||||||||||||||||
Sbjct: 3431496 cggcgaagccggtgatgaac 3431515

>emb|AL354751.7| Human DNA sequence from clone RP11-100G15 on chromosome 9 Contains the
             5' end of the SPTLC1 gene for serine palmitoyltransferase
             long chain base subunit 1, a pseudogene similar to part of
             ATP synthase 6 (MTATP6), a cytochrome c oxidase III
             (MTCO3) pseudogene, pseudogenes for NADH dehydrogenases 3,
             4 and 4L (MTND3, MTND4L, MTND4), a protein tyrosine
             phosphatase pseudogene, a novel gene (LOC158314), two
             novel genes, part of a novel gene and a CpG island,
             complete sequence
          Length = 104228

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   ctactcaaactttccatgga 123
             ||||||||||||||||||||
Sbjct: 60308 ctactcaaactttccatgga 60327

>ref|XM_786460.1| PREDICTED: Strongylocentrotus purpuratus similar to WD repeat domain
            40A (LOC586688), mRNA
          Length = 1833

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    gcaaggttttttcttttctt 24
            ||||||||||||||||||||
Sbjct: 1442 gcaaggttttttcttttctt 1461

>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16
          Length = 349635

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    cggcgaagccggtgatgaac 304
              ||||||||||||||||||||
Sbjct: 144672 cggcgaagccggtgatgaac 144653

>dbj|AB192509.2| Sus scrofa genomic DNA, chromosome 7, BAC clone: L139G16, complete
              sequence
          Length = 157870

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      gcaaggttttttcttttctt 24
              ||||||||||||||||||||
Sbjct: 119895 gcaaggttttttcttttctt 119876

>gb|AE005750.1| Caulobacter crescentus CB15 section 76 of 359 of the complete genome
          Length = 11605

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  cggcgaagccggtgatgaac 304
            ||||||||||||||||||||
Sbjct: 2192 cggcgaagccggtgatgaac 2173

>gb|AC079065.8| Homo sapiens chromosome 8, clone RP11-49F13, complete sequence
          Length = 187837

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      gcaaggttttttcttttctt 24
              ||||||||||||||||||||
Sbjct: 118880 gcaaggttttttcttttctt 118899

>gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, complete sequence
          Length = 170363

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      caaggttttttcttttcttc 25
              ||||||||||||||||||||
Sbjct: 115141 caaggttttttcttttcttc 115122

>gb|AC090341.9| Homo sapiens chromosome 8, clone RP11-734H6, complete sequence
          Length = 186540

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     gcaaggttttttcttttctt 24
             ||||||||||||||||||||
Sbjct: 21064 gcaaggttttttcttttctt 21045

>gb|AC153649.4| Mus musculus BAC clone RP24-93B8 from chromosome 1, complete sequence
          Length = 162838

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     aaggttttttcttttcttcc 26
             ||||||||||||||||||||
Sbjct: 65754 aaggttttttcttttcttcc 65773

>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 13      ttttcttttcttccgaataacatt 36
               ||||||||||||||||||| ||||
Sbjct: 3988759 ttttcttttcttccgaatagcatt 3988736

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 260      gaatgatatcatgccttttt 279
                ||||||||||||||||||||
Sbjct: 11231453 gaatgatatcatgccttttt 11231472



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 260      gaatgatatcatgccttttt 279
                ||||||||||||||||||||
Sbjct: 11224952 gaatgatatcatgccttttt 11224933



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 260      gaatgatatcatgccttttt 279
                ||||||||||||||||||||
Sbjct: 11205336 gaatgatatcatgccttttt 11205317



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 260      gaatgatatcatgccttttt 279
                ||||||||||||||||||||
Sbjct: 11184669 gaatgatatcatgccttttt 11184650



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 260      gaatgatatcatgccttttt 279
                ||||||||||||||||||||
Sbjct: 11177424 gaatgatatcatgccttttt 11177405

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 285     cggcgaagccggtgatgaac 304
               ||||||||||||||||||||
Sbjct: 8473061 cggcgaagccggtgatgaac 8473080

>emb|BX649599.7| Zebrafish DNA sequence from clone CH211-224B1 in linkage group 18,
              complete sequence
          Length = 162087

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     aataacattatacagtatat 47
              ||||||||||||||||||||
Sbjct: 105436 aataacattatacagtatat 105417

>dbj|AP005541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0436B05
          Length = 149754

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   gaatgatatcatgccttttt 279
             ||||||||||||||||||||
Sbjct: 66471 gaatgatatcatgccttttt 66490



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   gaatgatatcatgccttttt 279
             ||||||||||||||||||||
Sbjct: 59970 gaatgatatcatgccttttt 59951



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   gaatgatatcatgccttttt 279
             ||||||||||||||||||||
Sbjct: 40354 gaatgatatcatgccttttt 40335



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   gaatgatatcatgccttttt 279
             ||||||||||||||||||||
Sbjct: 19687 gaatgatatcatgccttttt 19668



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   gaatgatatcatgccttttt 279
             ||||||||||||||||||||
Sbjct: 12442 gaatgatatcatgccttttt 12423

>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete
             sequence
          Length = 214859

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     gcaaggttttttcttttctt 24
             ||||||||||||||||||||
Sbjct: 74713 gcaaggttttttcttttctt 74694

>dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT14P20, TM0087,
              complete sequence
          Length = 124300

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      gcaaggttttttcttttctt 24
              ||||||||||||||||||||
Sbjct: 112806 gcaaggttttttcttttctt 112787

>gb|AC136500.1| Homo sapiens chromosome 5 clone RP11-56P2, complete sequence
          Length = 183967

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      caaggttttttcttttcttc 25
              ||||||||||||||||||||
Sbjct: 105312 caaggttttttcttttcttc 105293


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,784,191
Number of Sequences: 3902068
Number of extensions: 3784191
Number of successful extensions: 118163
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117992
Number of HSP's gapped (non-prelim): 171
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)