ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IBP7_MOUSE (Q61581) Insulin-like growth factor-binding protein 7... 28 8.5
2CSF1_HUMAN (P09603) Macrophage colony-stimulating factor 1 precu... 28 8.5
3TGIF_PANTR (Q5IS58) 5'-TG-3'-interacting factor (Homeobox protei... 28 8.5
4IBB1_COILA (P07679) Bowman-Birk type trypsin inhibitor TI1 28 8.5

>IBP7_MOUSE (Q61581) Insulin-like growth factor-binding protein 7 precursor|
           (IGFBP-7) (IBP-7) (IGF-binding protein 7) (MAC25
           protein)
          Length = 281

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 80  ETKSSCICVPAAAR-DAEPAGTSSSSLPHLGP 172
           ET+ +C C P  AR + EP G  ++   H  P
Sbjct: 51  ETRDACGCCPVCARGEGEPCGGGAAGRGHCAP 82



to top

>CSF1_HUMAN (P09603) Macrophage colony-stimulating factor 1 precursor (CSF-1)|
           (MCSF) (M-CSF) (Lanimostim)
          Length = 554

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 104 VPAAARDAEPAGTSSSSLPHLGPRSP 181
           +PA+A+  +PA  + ++LP +GP  P
Sbjct: 350 LPASAKGQQPADVTGTALPRVGPVRP 375



to top

>TGIF_PANTR (Q5IS58) 5'-TG-3'-interacting factor (Homeobox protein TGIF)|
          Length = 401

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = +2

Query: 56  LWINIKTRETK--SSCICVPAAARDAEPAGTSSSSLPHLGPRSPGYWSL 196
           LW ++ T      SSC   P  AR  +P   S       GPR P  W L
Sbjct: 64  LWSSLATPSALLGSSCAPPPPPARCPQPRALSPELGTKAGPRRPHRWEL 112



to top

>IBB1_COILA (P07679) Bowman-Birk type trypsin inhibitor TI1|
          Length = 64

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 204 HVCNDQYPGDLGPRCGKD 151
           HVC D Y GD GP C  D
Sbjct: 47  HVCFDTYIGDPGPTCHDD 64


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,682,668
Number of Sequences: 219361
Number of extensions: 338178
Number of successful extensions: 915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top