ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK106083.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.044
2ref|XM_507398.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 0.68
3ref|XM_507397.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 0.68
4ref|NM_193082.2| Oryza sativa (japonica cultivar-group), mRNA 42 0.68
5ref|XM_506491.2| PREDICTED Oryza sativa (japonica cultivar-group... 42 0.68
6ref|XM_789738.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 0.68
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.68
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.68
9dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.68
10dbj|AK071297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.68
11dbj|AK068064.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.68
12dbj|AK059570.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.68
13gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.68
14emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005... 42 0.68
15emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa... 42 0.68
16gb|AC092140.4| Homo sapiens chromosome 16 clone RP11-413H22, com... 40 2.7
17gb|BC049287.1| Xenopus laevis procollagen, type I, alpha 2, mRNA... 40 2.7

>dbj|AK106083.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A10, full
           insert sequence
          Length = 1331

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 130 gccggcggggacgtcgtcgtcatccttgccg 160
           ||||||| ||||||||||||||||| |||||
Sbjct: 482 gccggcgtggacgtcgtcgtcatccctgccg 512



to top

>ref|XM_507398.1| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.138 mRNA
          Length = 1480

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 130 gccggcggggacgtcgtcgtcatcc 154
           ||||||| |||||||||||||||||
Sbjct: 631 gccggcgtggacgtcgtcgtcatcc 655



to top

>ref|XM_507397.1| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.138 mRNA
          Length = 1834

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 130  gccggcggggacgtcgtcgtcatcc 154
            ||||||| |||||||||||||||||
Sbjct: 985  gccggcgtggacgtcgtcgtcatcc 1009



to top

>ref|NM_193082.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1331

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 130 gccggcggggacgtcgtcgtcatcc 154
           ||||||| |||||||||||||||||
Sbjct: 482 gccggcgtggacgtcgtcgtcatcc 506



to top

>ref|XM_506491.2| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.138 mRNA
          Length = 1611

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 130 gccggcggggacgtcgtcgtcatcc 154
           ||||||| |||||||||||||||||
Sbjct: 518 gccggcgtggacgtcgtcgtcatcc 542



to top

>ref|XM_789738.1| PREDICTED: Strongylocentrotus purpuratus similar to aarF domain
           containing kinase 5 (LOC590121), partial mRNA
          Length = 1535

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 172 aaggtcaccggggtactggtc 192
           |||||||||||||||||||||
Sbjct: 771 aaggtcaccggggtactggtc 751



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 133     ggcggggacgtcgtcgtcatc 153
               |||||||||||||||||||||
Sbjct: 4712377 ggcggggacgtcgtcgtcatc 4712357



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 130      gccggcggggacgtcgtcgtcatcc 154
                ||||||| |||||||||||||||||
Sbjct: 26101338 gccggcgtggacgtcgtcgtcatcc 26101314



to top

>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0011H09
          Length = 147992

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 130    gccggcggggacgtcgtcgtcatcc 154
              ||||||| |||||||||||||||||
Sbjct: 134900 gccggcgtggacgtcgtcgtcatcc 134876



to top

>dbj|AK071297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084J02, full
           insert sequence
          Length = 1611

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 130 gccggcggggacgtcgtcgtcatcc 154
           ||||||| |||||||||||||||||
Sbjct: 517 gccggcgtggacgtcgtcgtcatcc 541



to top

>dbj|AK068064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130E16, full
            insert sequence
          Length = 1834

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 130  gccggcggggacgtcgtcgtcatcc 154
            ||||||| |||||||||||||||||
Sbjct: 985  gccggcgtggacgtcgtcgtcatcc 1009



to top

>dbj|AK059570.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A01, full
           insert sequence
          Length = 1480

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 130 gccggcggggacgtcgtcgtcatcc 154
           ||||||| |||||||||||||||||
Sbjct: 631 gccggcgtggacgtcgtcgtcatcc 655



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 133     ggcggggacgtcgtcgtcatc 153
               |||||||||||||||||||||
Sbjct: 4712358 ggcggggacgtcgtcgtcatc 4712338



to top

>emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005_B07 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 161762

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 133    ggcggggacgtcgtcgtcatc 153
              |||||||||||||||||||||
Sbjct: 134754 ggcggggacgtcgtcgtcatc 134774



to top

>emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa0063C08 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147355

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 133   ggcggggacgtcgtcgtcatc 153
             |||||||||||||||||||||
Sbjct: 39750 ggcggggacgtcgtcgtcatc 39770



to top

>gb|AC092140.4| Homo sapiens chromosome 16 clone RP11-413H22, complete sequence
          Length = 193188

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     taaacattaagaccagagaa 82
              ||||||||||||||||||||
Sbjct: 130269 taaacattaagaccagagaa 130250



to top

>gb|BC049287.1| Xenopus laevis procollagen, type I, alpha 2, mRNA (cDNA clone
            MGC:52958 IMAGE:4930434), complete cds
          Length = 4428

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   aagaccagagaaaccaagag 90
            ||||||||||||||||||||
Sbjct: 2677 aagaccagagaaaccaagag 2658


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,439,269
Number of Sequences: 3902068
Number of extensions: 1439269
Number of successful extensions: 141545
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141337
Number of HSP's gapped (non-prelim): 208
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top