Clone Name | rbastl40c11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK106083.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A10, full insert sequence Length = 1331 Score = 46.1 bits (23), Expect = 0.044 Identities = 29/31 (93%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatccttgccg 160 ||||||| ||||||||||||||||| ||||| Sbjct: 482 gccggcgtggacgtcgtcgtcatccctgccg 512
>ref|XM_507398.1| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.138 mRNA Length = 1480 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 631 gccggcgtggacgtcgtcgtcatcc 655
>ref|XM_507397.1| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.138 mRNA Length = 1834 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 985 gccggcgtggacgtcgtcgtcatcc 1009
>ref|NM_193082.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1331 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 482 gccggcgtggacgtcgtcgtcatcc 506
>ref|XM_506491.2| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.138 mRNA Length = 1611 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 518 gccggcgtggacgtcgtcgtcatcc 542
>ref|XM_789738.1| PREDICTED: Strongylocentrotus purpuratus similar to aarF domain containing kinase 5 (LOC590121), partial mRNA Length = 1535 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 aaggtcaccggggtactggtc 192 ||||||||||||||||||||| Sbjct: 771 aaggtcaccggggtactggtc 751
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 ggcggggacgtcgtcgtcatc 153 ||||||||||||||||||||| Sbjct: 4712377 ggcggggacgtcgtcgtcatc 4712357
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Minus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 26101338 gccggcgtggacgtcgtcgtcatcc 26101314
>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0011H09 Length = 147992 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Minus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 134900 gccggcgtggacgtcgtcgtcatcc 134876
>dbj|AK071297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084J02, full insert sequence Length = 1611 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 517 gccggcgtggacgtcgtcgtcatcc 541
>dbj|AK068064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130E16, full insert sequence Length = 1834 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 985 gccggcgtggacgtcgtcgtcatcc 1009
>dbj|AK059570.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A01, full insert sequence Length = 1480 Score = 42.1 bits (21), Expect = 0.68 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 631 gccggcgtggacgtcgtcgtcatcc 655
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 ggcggggacgtcgtcgtcatc 153 ||||||||||||||||||||| Sbjct: 4712358 ggcggggacgtcgtcgtcatc 4712338
>emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005_B07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161762 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 ggcggggacgtcgtcgtcatc 153 ||||||||||||||||||||| Sbjct: 134754 ggcggggacgtcgtcgtcatc 134774
>emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa0063C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147355 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 ggcggggacgtcgtcgtcatc 153 ||||||||||||||||||||| Sbjct: 39750 ggcggggacgtcgtcgtcatc 39770
>gb|AC092140.4| Homo sapiens chromosome 16 clone RP11-413H22, complete sequence Length = 193188 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 taaacattaagaccagagaa 82 |||||||||||||||||||| Sbjct: 130269 taaacattaagaccagagaa 130250
>gb|BC049287.1| Xenopus laevis procollagen, type I, alpha 2, mRNA (cDNA clone MGC:52958 IMAGE:4930434), complete cds Length = 4428 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aagaccagagaaaccaagag 90 |||||||||||||||||||| Sbjct: 2677 aagaccagagaaaccaagag 2658 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,439,269 Number of Sequences: 3902068 Number of extensions: 1439269 Number of successful extensions: 141545 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141337 Number of HSP's gapped (non-prelim): 208 length of query: 212 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 190 effective length of database: 17,147,199,772 effective search space: 3257967956680 effective search space used: 3257967956680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)