ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl40c10 |
|---|---|
| Clone Library Name | barley_pub |
>DMD_CANFA (O97592) Dystrophin| Length = 3680 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = -2 Query: 285 WPRGRAPASASRL-----HGRPRCHGVRLERRRATAKMMDEESTYICDVTIPNKNSPDTH 121 WP APAS+ +L H R + RL+ KM + +Y+ D PN++ D H Sbjct: 3411 WPVDSAPASSPQLSHDDTHSRIEHYASRLK------KMENSNGSYLNDSISPNESIDDEH 3464 Query: 120 SFLSSF 103 + + Sbjct: 3465 LLIQHY 3470
>DMD_PIG (Q5GN48) Dystrophin| Length = 3674 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = -2 Query: 285 WPRGRAPASASRL-----HGRPRCHGVRLERRRATAKMMDEESTYICDVTIPNKNSPDTH 121 WP APAS+ +L H R + RL A+M + +Y+ D PN++ D H Sbjct: 3405 WPVDSAPASSPQLSHDDTHSRIEHYASRL------AEMENSNGSYLNDSISPNESIDDEH 3458 Query: 120 SFLSSF 103 + + Sbjct: 3459 LLIQHY 3464
>DMD_MOUSE (P11531) Dystrophin| Length = 3678 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = -2 Query: 285 WPRGRAPASASRL-----HGRPRCHGVRLERRRATAKMMDEESTYICDVTIPNKNSPDTH 121 WP APAS+ +L H R + RL A+M + +Y+ D PN++ D H Sbjct: 3409 WPVDSAPASSPQLSHDDTHSRIEHYASRL------AEMENSNGSYLNDSISPNESIDDEH 3462 Query: 120 SFLSSF 103 + + Sbjct: 3463 LLIQHY 3468
>NUDH_PSEAE (Q9X4P2) Probable (di)nucleoside polyphosphate hydrolase (EC| 3.6.1.-) Length = 159 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = -2 Query: 300 ACQEPWPRGRAPASASRLHGRPRCHGVRLERRRATAKMMDEESTYICDVT 151 AC W R R P R H +P C G + ++ ++M +E+ D+T Sbjct: 69 ACTRGWLRYRLPQRLVRTHSQPLCIGQK--QKWFLLRLMSDEARVRMDIT 116
>DMD_HUMAN (P11532) Dystrophin| Length = 3685 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = -2 Query: 285 WPRGRAPASASRL-----HGRPRCHGVRLERRRATAKMMDEESTYICDVTIPNKNSPDTH 121 WP APAS+ +L H R + RL A+M + +Y+ D PN++ D H Sbjct: 3416 WPVDSAPASSPQLSHDDTHSRIEHYASRL------AEMENSNGSYLNDSISPNESIDDEH 3469 Query: 120 SFLSSF 103 + + Sbjct: 3470 LLIQHY 3475
>LOLA_PSEU2 (Q9Z3U0) Outer-membrane lipoprotein carrier protein precursor| Length = 207 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +3 Query: 168 MCFPRPSSWQWHGDVPVVHRDIEAGHGVSKRSPELDRV 281 M RP + WH D P + G VS P+L++V Sbjct: 62 MALQRPGLFNWHTDAPQEQLMVSDGKKVSLWDPDLEQV 99
>LOLA_PSESM (Q87ZS6) Outer-membrane lipoprotein carrier protein precursor| Length = 207 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +3 Query: 168 MCFPRPSSWQWHGDVPVVHRDIEAGHGVSKRSPELDRV 281 M RP + WH D P + G VS P+L++V Sbjct: 62 MALQRPGLFNWHTDAPQEQLMVSDGKKVSLWDPDLEQV 99
>CAD18_HUMAN (Q13634) Cadherin-18 precursor (Cadherin-14)| Length = 790 Score = 28.9 bits (63), Expect = 3.5 Identities = 17/61 (27%), Positives = 28/61 (45%) Frame = -1 Query: 241 PASMSRCTTGTSPCHCQDDGRGKHIHL*CNYTQQELAGHALIFVIVCDASIRVWSVIFIL 62 P+ S T C C+ DGR + H + L+ ALI +++C + V+FI Sbjct: 576 PSLSSSSTLTIRVCACERDGRVRTCHAEAFLSSAGLSTGALIAILLCVLILLAIVVLFIT 635 Query: 61 I 59 + Sbjct: 636 L 636
>SSUE_ECOLI (P80644) FMN reductase (EC 1.5.1.29) (Sulfate starvation-induced| protein 4) (SSI4) Length = 191 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -3 Query: 293 RSPGHAVELRRALRDSMAGLDVTVYDWNV 207 R P + L R+ + GLDV VY WN+ Sbjct: 11 RFPSRSSSLLEYAREKLNGLDVEVYHWNL 39
>Y2386_BRUAB (Q579Z7) UPF0176 protein BruAb2_0086| Length = 305 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 177 PRPSSWQWHGDVPVVHRDIEAGHGVSKRSPELDRVARAP 293 PR S W+G+ V + GHG+++ EL R R P Sbjct: 215 PREQS-MWNGECFVFDERVAVGHGLAESDVELCRACRRP 252
>Y007_BRUME (Q8YE11) UPF0176 protein BMEII0007| Length = 305 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 177 PRPSSWQWHGDVPVVHRDIEAGHGVSKRSPELDRVARAP 293 PR S W+G+ V + GHG+++ EL R R P Sbjct: 226 PREQS-MWNGECFVFDERVAVGHGLAESDVELCRACRRP 263
>MAP4_HUMAN (P27816) Microtubule-associated protein 4 (MAP 4)| Length = 1152 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -2 Query: 303 PACQEPWPRGRAPASASRLHGRPRCHGVRLERRRATAKMMDEEST 169 PA E P AP SAS L+G P G +R T +E++ Sbjct: 1107 PAISEAAPEAGAPTSASGLNGHPTLSGGGDQREAQTLDSQIQETS 1151
>RPOA_METCA (Q605D7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +3 Query: 201 HGDVPVVHRDIEAGHGVSKRSPEL 272 HG PV+ DIEA H V +PEL Sbjct: 105 HGPGPVLAGDIEASHDVEVLNPEL 128
>CCA_ERWCT (Q6D160) Multifunctional CCA protein [Includes: CCA-adding enzyme| (EC 2.7.7.25) (EC 2.7.7.21) (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase (EC 3.1.3.-); 2',3'-cycli Length = 414 Score = 28.1 bits (61), Expect = 5.9 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Frame = -3 Query: 260 ALRDSMAGLDVTVYDWNV--AVP---LPR*WTRKAHTFVM*LYPXXXXXXXTHFCHRL*C 96 A+RDS+ GL VT DW V A P L + + + F + L+P R Sbjct: 9 AVRDSLLGLPVTEKDWVVVGATPEHLLAQGYQQVGKDFPVFLHPISRDEYALARTERKSG 68 Query: 95 K-YTCMVCNFHPDL 57 K YT VC+ PD+ Sbjct: 69 KGYTGFVCHAEPDV 82
>ZNF26_HUMAN (P17031) Zinc finger protein 26 (Zinc finger protein KOX20)| Length = 199 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/37 (27%), Positives = 18/37 (48%) Frame = +3 Query: 36 SDCTDLYQIRMKITDHTRILASQTMTKMSACPASSCW 146 S+C + + +++H R+ + K S C S CW Sbjct: 151 SECGKAFTQKSSLSEHQRVHTGEKPWKCSECGKSFCW 187
>EDN2_HORSE (Q867D0) Endothelin-2 precursor (ET-2) (Preproendothelin-2) (PPET2)| Length = 178 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = -2 Query: 276 GRAPASASRLHGRPRCHGVRLERRRAT-AKMMDEESTYICDVTIPNKNSP 130 G+A A+ + PR G L RR + + +D+E Y C + I N+P Sbjct: 24 GQATATPEQPVPSPRAQGSHLRPRRCSCSSWLDKECVYFCHLDIIWVNTP 73
>COAE_ANASP (Q8YW62) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 196 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +3 Query: 207 DVPVVHRDIEAGHGVSKRSPELDRVARAPGKQ 302 ++P+ DI A VS SP LD +AR GK+ Sbjct: 28 NLPIFDADIYARDAVSLGSPILDAIARRYGKE 59
>Y3086_BRUSU (Q8FXJ1) UPF0176 protein BRA0086| Length = 308 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 177 PRPSSWQWHGDVPVVHRDIEAGHGVSKRSPELDRVARAP 293 PR S W+G+ V + GHG+++ EL R R P Sbjct: 218 PREQS-VWNGECFVFDERVAVGHGLAESDVELCRACRRP 255 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,288,232 Number of Sequences: 219361 Number of extensions: 918199 Number of successful extensions: 3035 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2951 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3035 length of database: 80,573,946 effective HSP length: 76 effective length of database: 63,902,510 effective search space used: 1533660240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
