ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL845430.12| Mouse DNA sequence from clone RP23-402L5 on chr... 42 1.0
2emb|CR354401.17| Zebrafish DNA sequence from clone CH211-101C7 i... 40 4.0
3emb|CR293518.13| Zebrafish DNA sequence from clone CH211-129L10 ... 40 4.0
4emb|CT573313.6| H.melpomene DNA sequence from clone AEHM-46M10, ... 40 4.0
5emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chr... 40 4.0

>emb|AL845430.12| Mouse DNA sequence from clone RP23-402L5 on chromosome 2, complete
            sequence
          Length = 201232

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 284  cagggctcctggcaagcagga 304
            |||||||||||||||||||||
Sbjct: 3036 cagggctcctggcaagcagga 3056



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>emb|CR354401.17| Zebrafish DNA sequence from clone CH211-101C7 in linkage group 12,
              complete sequence
          Length = 168372

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    tagttacatcacaaatgtat 169
              ||||||||||||||||||||
Sbjct: 110978 tagttacatcacaaatgtat 110959



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>emb|CR293518.13| Zebrafish DNA sequence from clone CH211-129L10 in linkage group 12,
              complete sequence
          Length = 196374

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    tagttacatcacaaatgtat 169
              ||||||||||||||||||||
Sbjct: 146452 tagttacatcacaaatgtat 146433



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>emb|CT573313.6| H.melpomene DNA sequence from clone AEHM-46M10, complete sequence
          Length = 112576

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   tagttacatcacaaatgtat 169
             ||||||||||||||||||||
Sbjct: 41211 tagttacatcacaaatgtat 41192



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>emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chromosome X, complete
              sequence
          Length = 197632

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      tccagatttcattgtagcta 28
              ||||||||||||||||||||
Sbjct: 171257 tccagatttcattgtagcta 171238


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,341,264
Number of Sequences: 3902068
Number of extensions: 2341264
Number of successful extensions: 40999
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40993
Number of HSP's gapped (non-prelim): 6
length of query: 304
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 282
effective length of database: 17,147,199,772
effective search space: 4835510335704
effective search space used: 4835510335704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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