ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476650.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
2dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
3gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 44 0.30
4gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 44 0.30
5gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 44 0.30
6gb|CP000001.1| Bacillus cereus E33L, complete genome 44 0.30
7gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 44 0.30
8gb|AC166163.3| Mus musculus BAC clone RP23-444G9 from chromosome... 42 1.2
9gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4... 42 1.2
10gb|AC098722.3| Mus musculus BAC clone RP23-3B20 from 14, complet... 42 1.2
11emb|Y11171.1|BC542A B.cereus bc542a gene 42 1.2
12gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 42 1.2
13gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosom... 40 4.8
14gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, co... 40 4.8
15gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosom... 40 4.8
16gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome... 40 4.8
17emb|Z36238.1|CER74 Caenorhabditis elegans Cosmid R74, complete s... 40 4.8
18gb|AC003092.1| Homo sapiens BAC clone CTA-335O22 from 7, complet... 40 4.8
19gb|AC099601.6| Mus musculus chromosome 7, clone RP23-240K1, comp... 40 4.8
20gb|AC146121.3| Pan troglodytes BAC clone RP43-4M8 from 7, comple... 40 4.8
21emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chr... 40 4.8
22gb|AC096845.2| Takifugu rubripes clone 214J14, complete sequence 40 4.8
23gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 4.8
24gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 1... 40 4.8
25dbj|AK032933.1| Mus musculus 12 days embryo male wolffian duct i... 40 4.8
26gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E... 40 4.8
27ref|NM_065436.3| Caenorhabditis elegans Leucyl tRNA Synthetase f... 40 4.8
28gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete ... 40 4.8
29gb|AC093391.5| Homo sapiens BAC clone RP11-798L22 from 2, comple... 40 4.8
30gb|AC147324.3| Pan troglodytes BAC clone RP43-41B9 from chromoso... 40 4.8
31gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosom... 40 4.8
32gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14... 40 4.8
33gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24... 40 4.8
34gb|AC158200.2| Physcomitrella patens clone JGIASYB-1A15, complet... 40 4.8
35emb|AL954656.9| Zebrafish DNA sequence from clone CH211-67N10 in... 40 4.8
36dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 4.8
37gb|AC174459.2| Mus musculus BAC clone RP23-358J23 from chromosom... 40 4.8
38gb|AC154390.1| Mus musculus BAC clone RP23-10G24 from 13, comple... 40 4.8
39emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chrom... 40 4.8
40emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chr... 40 4.8 
>ref|XM_476650.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3250

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                        
Query: 274  gaggcgcttcagttagcacttgctgtgttttggccttttcagcagcttgtggctaggtgc 333
            |||| |||||| ||| || ||||||||  | | |||||||| ||||||| ||||||| ||
Sbjct: 2915 gaggagcttcaattaacatttgctgtggctagcccttttcaacagcttgcggctaggcgc 2856

                                     
Query: 334  ggcgtggtcatccttatatagtgat 358
              | |||||||||||||| ||||||
Sbjct: 2855 cacatggtcatccttatacagtgat 2831
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>dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full
            insert sequence
          Length = 3250

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                        
Query: 274  gaggcgcttcagttagcacttgctgtgttttggccttttcagcagcttgtggctaggtgc 333
            |||| |||||| ||| || ||||||||  | | |||||||| ||||||| ||||||| ||
Sbjct: 2915 gaggagcttcaattaacatttgctgtggctagcccttttcaacagcttgcggctaggcgc 2856

                                     
Query: 334  ggcgtggtcatccttatatagtgat 358
              | |||||||||||||| ||||||
Sbjct: 2855 cacatggtcatccttatacagtgat 2831
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 64      aaaagaaacaacagctaggcaacaag 89
               ||||||||||||||||| ||||||||
Sbjct: 1934290 aaaagaaacaacagctatgcaacaag 1934265
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 64      aaaagaaacaacagctaggcaacaag 89
               ||||||||||||||||| ||||||||
Sbjct: 1897377 aaaagaaacaacagctatgcaacaag 1897352
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 64      aaaagaaacaacagctaggcaacaag 89
               ||||||||||||||||| ||||||||
Sbjct: 1897321 aaaagaaacaacagctatgcaacaag 1897296
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 64      aaaagaaacaacagctaggcaacaag 89
               ||||||||||||||||| ||||||||
Sbjct: 1955054 aaaagaaacaacagctatgcaacaag 1955029
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 64      aaaagaaacaacagctaggcaacaag 89
               ||||||||||||||||| ||||||||
Sbjct: 1897254 aaaagaaacaacagctatgcaacaag 1897229
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>gb|AC166163.3| Mus musculus BAC clone RP23-444G9 from chromosome 17, complete sequence
          Length = 171447

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    atataaacacaataaaagaaa 71
             |||||||||||||||||||||
Sbjct: 75101 atataaacacaataaaagaaa 75121
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>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete
              sequence
          Length = 258658

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 50     tatataaacacaataaaagaa 70
              |||||||||||||||||||||
Sbjct: 194672 tatataaacacaataaaagaa 194652
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>gb|AC098722.3| Mus musculus BAC clone RP23-3B20 from 14, complete sequence
          Length = 197946

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   ttgagctggatccaagtttag 254
             |||||||||||||||||||||
Sbjct: 38287 ttgagctggatccaagtttag 38267
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>emb|Y11171.1|BC542A B.cereus bc542a gene
          Length = 2195

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 64  aaaagaaacaacagctaggcaacaa 88
           ||||||||||||||||| |||||||
Sbjct: 315 aaaagaaacaacagctatgcaacaa 291
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 64      aaaagaaacaacagctaggcaacaa 88
               ||||||||||||||||| |||||||
Sbjct: 2021940 aaaagaaacaacagctatgcaacaa 2021916
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>gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosome 6, complete sequence
          Length = 182955

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    ataaacacaataaaagaaacaaca 76
             ||||||| ||||||||||||||||
Sbjct: 28965 ataaacataataaaagaaacaaca 28942
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>gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, complete sequence
          Length = 215331

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 51    atataaacacaataaaagaaacaa 74
             ||||||||| ||||||||||||||
Sbjct: 63779 atataaacaaaataaaagaaacaa 63756
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>gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosome 14, complete sequence
          Length = 191104

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     aatatataaacacaataaaa 67
              ||||||||||||||||||||
Sbjct: 107679 aatatataaacacaataaaa 107660
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>gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome 12, complete sequence
          Length = 192581

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    ttttggccttttcagcagct 320
              ||||||||||||||||||||
Sbjct: 132132 ttttggccttttcagcagct 132151
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>emb|Z36238.1|CER74 Caenorhabditis elegans Cosmid R74, complete sequence
          Length = 24957

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 94  tctacaatctacaatgctta 113
           ||||||||||||||||||||
Sbjct: 201 tctacaatctacaatgctta 182
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>gb|AC003092.1| Homo sapiens BAC clone CTA-335O22 from 7, complete sequence
          Length = 108878

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     tacattcagaattttagact 26
             ||||||||||||||||||||
Sbjct: 58720 tacattcagaattttagact 58701
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>gb|AC099601.6| Mus musculus chromosome 7, clone RP23-240K1, complete sequence
          Length = 252659

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     tcagaattttagactcacaa 31
              ||||||||||||||||||||
Sbjct: 182509 tcagaattttagactcacaa 182490
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>gb|AC146121.3| Pan troglodytes BAC clone RP43-4M8 from 7, complete sequence
          Length = 153260

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      tacattcagaattttagact 26
              ||||||||||||||||||||
Sbjct: 111689 tacattcagaattttagact 111708
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>emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chromosome 6 Contains a
            ribosomal protein L7 (RPL7) pseudogene, the TFAP2A gene
            for transcription factor AP-2 alpha (activating
            enhancer-binding protein 2 alpha), four novel genes, a
            mitochondrial ribosomal protein L47 (MRPL47) pseudogene
            and 11 CpG islands, complete sequence
          Length = 180133

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 288  agcacttgctgtgttttggc 307
            ||||||||||||||||||||
Sbjct: 9698 agcacttgctgtgttttggc 9717
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>gb|AC096845.2| Takifugu rubripes clone 214J14, complete sequence
          Length = 134105

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   tgttttggccttttcagcag 318
             ||||||||||||||||||||
Sbjct: 20428 tgttttggccttttcagcag 20447
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>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 48     aatatataaacacaataaaagaaa 71
              |||||| |||||||||||||||||
Sbjct: 663290 aatataaaaacacaataaaagaaa 663313
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>gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 15q15, complete
             sequence
          Length = 200690

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    tataaacacaataaaagaaa 71
             ||||||||||||||||||||
Sbjct: 60240 tataaacacaataaaagaaa 60221
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>dbj|AK032933.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720474J21 product:unclassifiable, full insert
           sequence
          Length = 2262

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 53  ataaacacaataaaagaaacaaca 76
           ||||||| ||||||||||||||||
Sbjct: 172 ataaacataataaaagaaacaaca 195
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>gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E15, complete sequence
          Length = 169479

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     aaacacaataaaagaaacaa 74
              ||||||||||||||||||||
Sbjct: 150216 aaacacaataaaagaaacaa 150197
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>ref|NM_065436.3| Caenorhabditis elegans Leucyl tRNA Synthetase family member (lrs-1)
            (lrs-1) mRNA, complete cds
          Length = 3733

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 94   tctacaatctacaatgctta 113
            ||||||||||||||||||||
Sbjct: 1809 tctacaatctacaatgctta 1828
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>gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete sequence
          Length = 163823

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     tataaacacaataaaagaaa 71
              ||||||||||||||||||||
Sbjct: 130361 tataaacacaataaaagaaa 130342
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>gb|AC093391.5| Homo sapiens BAC clone RP11-798L22 from 2, complete sequence
          Length = 121496

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 51     atataaacacaataaaagaaacaa 74
              |||||||||||| |||||||||||
Sbjct: 114137 atataaacacaagaaaagaaacaa 114160
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>gb|AC147324.3| Pan troglodytes BAC clone RP43-41B9 from chromosome 7, complete sequence
          Length = 163009

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      tacattcagaattttagact 26
              ||||||||||||||||||||
Sbjct: 151038 tacattcagaattttagact 151019
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>gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosome 14, complete
             sequence
          Length = 156881

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    atatataaacacaataaaag 68
             ||||||||||||||||||||
Sbjct: 44377 atatataaacacaataaaag 44396
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>gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14C21 genomic sequence, complete
             sequence
          Length = 102135

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    aatatataaacacaataaaagaaa 71
             |||||||||| |||||||||||||
Sbjct: 48443 aatatataaagacaataaaagaaa 48420
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>gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24C10 genomic sequence, complete
             sequence
          Length = 77923

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    aatatataaacacaataaaagaaa 71
             |||||||||| |||||||||||||
Sbjct: 46129 aatatataaagacaataaaagaaa 46152
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>gb|AC158200.2| Physcomitrella patens clone JGIASYB-1A15, complete sequence
          Length = 41775

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    ataaaagaaacaacagctaggcaa 85
             ||||||||||||||| ||||||||
Sbjct: 31016 ataaaagaaacaacatctaggcaa 30993
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>emb|AL954656.9| Zebrafish DNA sequence from clone CH211-67N10 in linkage group 23,
              complete sequence
          Length = 180590

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     aatatataaacacaataaaa 67
              ||||||||||||||||||||
Sbjct: 176776 aatatataaacacaataaaa 176795
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 56      aacacaataaaagaaacaacagct 79
               ||||||||||||| ||||||||||
Sbjct: 3821701 aacacaataaaagcaacaacagct 3821678
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>gb|AC174459.2| Mus musculus BAC clone RP23-358J23 from chromosome 13, complete
           sequence
          Length = 229410

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 51  atataaacacaataaaagaaacaa 74
           ||||||||| ||||||||||||||
Sbjct: 893 atataaacaaaataaaagaaacaa 916
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>gb|AC154390.1| Mus musculus BAC clone RP23-10G24 from 13, complete sequence
          Length = 190233

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 51     atataaacacaataaaagaaacaa 74
              ||||||||| ||||||||||||||
Sbjct: 171827 atataaacaaaataaaagaaacaa 171804
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>emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chromosome 14, complete
              sequence
          Length = 232110

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     aatatataaacacaataaaa 67
              ||||||||||||||||||||
Sbjct: 222230 aatatataaacacaataaaa 222249
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>emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chromosome 2, complete
              sequence
          Length = 156705

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 50     tatataaacacaataaaagaaaca 73
              |||||||||||||||||| |||||
Sbjct: 113420 tatataaacacaataaaacaaaca 113397


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,590,130
Number of Sequences: 3902068
Number of extensions: 3590130
Number of successful extensions: 78933
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78706
Number of HSP's gapped (non-prelim): 227
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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