ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl40c08 |
|---|---|
| Clone Library Name | barley_pub |
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 54.3 bits (129), Expect = 7e-08 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PYELMAPSSGPGITCRGVPNSVTI Sbjct: 876 PYELMAPSSGPGITCRGVPNSVTI 899
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 47.8 bits (112), Expect = 6e-06 Identities = 19/24 (79%), Positives = 23/24 (95%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PYEL+APSS PG+TCRGVPNS++I Sbjct: 895 PYELLAPSSPPGVTCRGVPNSISI 918
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 39.3 bits (90), Expect = 0.002 Identities = 15/24 (62%), Positives = 20/24 (83%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY L+ PSS G+TCRG+PNS++I Sbjct: 843 PYTLLYPSSEEGLTCRGIPNSISI 866
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 38.5 bits (88), Expect = 0.004 Identities = 15/24 (62%), Positives = 20/24 (83%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PYEL+ P S PG+T RG+PNS++I Sbjct: 873 PYELLKPFSEPGVTGRGIPNSISI 896
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 35.4 bits (80), Expect = 0.033 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY L+ PSS G+T RG+PNS++I Sbjct: 834 PYTLLLPSSKEGLTFRGIPNSISI 857
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 35.0 bits (79), Expect = 0.043 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY L+ PSS G+T RG+PNS++I Sbjct: 816 PYTLLYPSSEEGLTFRGIPNSISI 839
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 35.0 bits (79), Expect = 0.043 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY L+ PSS G+T RG+PNS++I Sbjct: 830 PYTLLYPSSEEGLTFRGIPNSISI 853
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 35.0 bits (79), Expect = 0.043 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY L+ PSS G+T RG+PNS++I Sbjct: 841 PYTLLHPSSKEGLTFRGIPNSISI 864
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 35.0 bits (79), Expect = 0.043 Identities = 15/24 (62%), Positives = 19/24 (79%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY L+ PSS G+T RG+PNSV+I Sbjct: 836 PYTLLFPSSEGGVTGRGIPNSVSI 859
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 35.0 bits (79), Expect = 0.043 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY L+ PSS G+T RG+PNS++I Sbjct: 838 PYTLLYPSSKEGLTFRGIPNSISI 861
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 34.3 bits (77), Expect = 0.074 Identities = 14/24 (58%), Positives = 20/24 (83%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY L+ P+S G+TCRG+PNS++I Sbjct: 843 PYTLLHPNS-EGLTCRGIPNSISI 865
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 32.7 bits (73), Expect = 0.22 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY L+ P+S G+T +G+PNSV+I Sbjct: 836 PYTLLFPTSEEGLTGKGIPNSVSI 859
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 32.3 bits (72), Expect = 0.28 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY+LM P S G+T G+PNS +I Sbjct: 918 PYQLMKPFSDAGVTGMGIPNSTSI 941
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 32.3 bits (72), Expect = 0.28 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY L+ P+S G+T +G+PNSV+I Sbjct: 837 PYTLLFPTSEGGLTGKGIPNSVSI 860
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 32.3 bits (72), Expect = 0.28 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY+LM P S G+T G+PNS +I Sbjct: 901 PYQLMKPFSDSGVTGMGIPNSTSI 924
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 32.3 bits (72), Expect = 0.28 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY L+ P+S G+T +G+PNSV+I Sbjct: 838 PYTLLFPTSEGGLTGKGIPNSVSI 861
>PCP1_YEAST (P53259) Rhomboid protein 1, mitochondrial precursor (EC| 3.4.21.105) (Processing of cytochrome c peroxidase protein 1) (Mitochondrial distribution and morphology protein 37) Length = 346 Score = 31.6 bits (70), Expect = 0.48 Identities = 20/77 (25%), Positives = 34/77 (44%) Frame = +1 Query: 91 YTFHHISMSQLLNRKKCN*IFSYLGPNQWRFGLRGEGPNQWRFSYMYVLFPETFPAQSIS 270 Y F H+ N +++ LG N FGL + P WRF Y+L + + IS Sbjct: 127 YLFEHVPPFTYFKTHPKNLVYALLGINVAVFGL-WQLPKCWRFLQKYMLLQKDYVTSKIS 185 Query: 271 RLKNSHGPLQFTLCGLD 321 + ++ +F G++ Sbjct: 186 IIGSAFSHQEFWHLGMN 202
>Y1013_HAEIN (Q57151) Hypothetical protein HI1013| Length = 258 Score = 30.8 bits (68), Expect = 0.82 Identities = 20/67 (29%), Positives = 29/67 (43%) Frame = +1 Query: 169 NQWRFGLRGEGPNQWRFSYMYVLFPETFPAQSISRLKNSHGPLQFTLCGLDGDAVRDASA 348 N+ F R E + F Y+ L+P +PAQ + + + HG GD + Sbjct: 13 NEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKVVLFNTPAGDVNKGEWG 72 Query: 349 GDARPGR 369 G A PGR Sbjct: 73 GSAIPGR 79
>NPY2R_CHICK (Q9DDN6) Neuropeptide Y receptor type 2 (NPY2-R) (NPY-Y2 receptor)| Length = 385 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 7 VLWIIYH*FTNVSSICRNLLTIGTYEIIYTFHHI 108 V W+ +H F VS I +L + Y++IYT H+ Sbjct: 283 VSWLPFHAFQLVSDIDSQVLDLKEYKLIYTVFHV 316
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = -2 Query: 390 PYELMAPSSGPGITCRGVPNSVTI 319 PY L+ SS G+T +G+PNS++I Sbjct: 841 PYTLLHRSSEEGLTFKGIPNSISI 864
>ABF2_BACSU (P94552) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) (Arabinosidase| 2) Length = 495 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 244 ETFPAQSISRLKNSHGPLQFTLCGLD 321 ETFP SIS K + G + T+C +D Sbjct: 395 ETFPQISISASKQAEGDINITICNID 420
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 6/30 (20%) Frame = -2 Query: 390 PYELMAPSSGP------GITCRGVPNSVTI 319 PY LM P++ GIT RG+PNS++I Sbjct: 834 PYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>YJHI_ECOLI (P39360) Putative HTH-type transcriptional regulator yjhI| Length = 262 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 Query: 18 YLPLIYKCFKHLSESLNYRNLRDHL 92 YL L+ KC + +S L YRN +HL Sbjct: 234 YLELLRKCAEQISYGLGYRNENEHL 258
>PARE_HAEIN (P43703) DNA topoisomerase 4 subunit B (EC 5.99.1.-) (Topoisomerase| IV subunit B) Length = 632 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +3 Query: 252 PGPKYIEAEKFPRSASIHSLRARW*RCSG 338 P PKY ++ KF S H LRA+ CSG Sbjct: 169 PNPKYFDSAKFSVSRLRHLLRAKAVLCSG 197
>ARGC_MORAB (Q9K4Z1) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 336 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -2 Query: 222 RESPLIWALATKAESPLIWAQIGEDLIAFFSVQKL---GHANMVECVN 88 R +P I A+ A L W Q G+DLI ++ L A ++C+N Sbjct: 277 RRTPSIKAVEKTAYYDLAWQQQGQDLIVVSAIDNLLKGAAAQAMQCIN 324
>BGAL_PSEHA (P81650) Beta-galactosidase (EC 3.2.1.23) (Lactase)| (Beta-D-galactoside galactohydrolase) Length = 1038 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +1 Query: 163 GPNQWRFGLR-GEGPNQWRFSYMYVLFPETFPAQSISRLKNSHGPLQFTL 309 G + W +G G+ N +F +LFP+ P S+ K S LQFTL Sbjct: 580 GKHYWAYGGDFGDELNDRQFCINGLLFPDRTPHPSLFEAKYSQQHLQFTL 629
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -2 Query: 387 YELMAPSSGPGITCRGVPNSVTI 319 YEL+ P+S G+T GVP S++I Sbjct: 874 YELLKPTSEHGVTGMGVPYSISI 896
>BGAL_KLEPN (P06219) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 1034 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = +1 Query: 175 WRFGLR-GEGPNQWRFSYMYVLFPETFPAQSISRLKNSHGPLQFTLCGLDGDAVRDASAG 351 W +G G+ PN +F ++FP+ P S+ K++ QFTL VR S Sbjct: 593 WAYGGDFGDKPNDRQFCMNGLVFPDRTPHPSLVEAKHAQQYFQFTLLSTSPLRVRIISEY 652 Query: 352 DARP 363 RP Sbjct: 653 LFRP 656
>C71A9_SOYBN (O81970) Cytochrome P450 71A9 (EC 1.14.-.-) (P450 CP1)| Length = 499 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +1 Query: 247 TFPAQSISRLKNSHGPLQFTLCG 315 T P QS+ L N HGPL F G Sbjct: 51 TLPHQSLQYLSNKHGPLMFLQLG 73
>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)| Length = 1316 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -3 Query: 143 LHFFLFKSWDMLIWW 99 LHF LF SW +LIW+ Sbjct: 303 LHFVLFLSWALLIWF 317
>OR22B_DROME (P81910) Odorant receptor 22b| Length = 397 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 10/71 (14%) Frame = +1 Query: 97 FHHISMSQLLNRKKCN*IFSYLGPNQWRFGLRGEGPNQWRFSY----------MYVLFPE 246 F HI L R K F YL W FG +W Y +++L P Sbjct: 6 FPHIKEKPLSERVKSRDAFVYLDRVMWSFGWTVPENKRWDLHYKLWSTFVTLVIFILLPI 65 Query: 247 TFPAQSISRLK 279 + + I R K Sbjct: 66 SVSVEYIQRFK 76
>COG4_HUMAN (Q9H9E3) Conserved oligomeric Golgi complex component 4| Length = 785 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +1 Query: 46 SICRNLLTIGTYEIIYTFHHIS-MSQLLNRKKCN*IFSYLGPNQWRFGLRGEGPNQWRFS 222 S+ L T+ T+ I F +S M+ +LN ++ I Y GPN GP WR + Sbjct: 710 SLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGPN--------SGPLTWRLT 761
>WN10B_PLEJO (P28132) Protein Wnt-10b (Fragment)| Length = 117 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -2 Query: 294 RTVGIFQPRYTLGRERLREKYVHIRESPLIWALATKAESP 175 + G+F PR L ++RL ++ V+ +SP TK +SP Sbjct: 38 KNTGVFHPR-RLKKKRLAKELVYFEKSPDFCERDTKVDSP 76
>ARGC_MORPR (Q9K4Z6) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 336 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 7/82 (8%) Frame = -2 Query: 312 AESELKRTVGIFQPRYTLGRERLREKYVHIRESPLIW----ALATKAESPLIWAQIGEDL 145 A +K G+ + T + + +R P W A+ A L W Q G+DL Sbjct: 243 ATINVKLAAGVTPEQVTAAYQEAYQDQPMVRLLPSGWPSIKAVEKTAYCDLAWQQQGQDL 302 Query: 144 IAFFSVQKL---GHANMVECVN 88 I ++ L A ++C+N Sbjct: 303 IVVSAIDNLLKGAAAQAMQCIN 324
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Frame = -2 Query: 390 PYELMAPS-SGPGITCRGVPNSVTI 319 PY ++ P+ G+T RG+PNS++I Sbjct: 838 PYTVLLPTCEDEGLTFRGIPNSISI 862
>PGK2_METTH (O27911) 2-phosphoglycerate kinase (EC 2.7.2.-) (2PGK)| Length = 306 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Frame = -2 Query: 252 ERLREKYVHIRESPLIWALATKAESPLI-----WAQIGEDLIAFFSVQKLGHANMV 100 E LR++ + E ++W + + PLI + +G IAF +LG NM+ Sbjct: 66 EHLRKEDPEVAEKYMLWRKIRQCKEPLIILIGGASGVGTSSIAFEVANRLGIRNMI 121
>GCP4_ARATH (Q9M350) Gamma-tubulin complex component 4 homolog| Length = 745 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +3 Query: 111 HVPTFEQKKMQLNLLLSGPKSMAIRPSWRGPKSMAILL 224 H+ + + +K LN S + IRP WR + MA L+ Sbjct: 560 HIESAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLI 597
>MURG_SHEON (Q8CX35) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 362 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Frame = -2 Query: 213 PLIWALATKAESPLIWAQIGEDLI-----AFFSVQKLGHANMVECVNDLVSSY 70 P + A +K +S +W Q+G+D + A+ + G N+ E ++D+ ++Y Sbjct: 202 PEVVAALSKQQSITVWHQVGKDNLAGVKSAYQQQGQDGGVNVAEFIDDMEAAY 254
>HSF8_LYCPE (P41153) Heat shock factor protein HSF8 (Heat shock transcription| factor 8) (HSTF 8) (Heat stress transcription factor) Length = 527 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +1 Query: 181 FGLRGEGPNQWRFSYMYVLFPETFPAQSISRLKNSHGPLQ 300 +G R P++W F+ L + +SISR K +HG Q Sbjct: 100 YGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQ 139
>HSF8_LYCES (Q40152) Heat shock factor protein HSF8 (Heat shock transcription| factor 8) (HSTF 8) (Heat stress transcription factor) Length = 527 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +1 Query: 181 FGLRGEGPNQWRFSYMYVLFPETFPAQSISRLKNSHGPLQ 300 +G R P++W F+ L + +SISR K +HG Q Sbjct: 98 YGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQ 137 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,498,440 Number of Sequences: 219361 Number of extensions: 1342263 Number of successful extensions: 3388 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 3300 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3387 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
