ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxyge... 523 e-145
2ref|XM_462649.1| Oryza sativa (japonica cultivar-group), predic... 92 2e-15
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
4emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 92 2e-15
5gb|AC147885.2| Xenopus tropicalis clone CH216-12C9, complete seq... 40 5.2
6emb|BX546446.15| Zebrafish DNA sequence from clone DKEY-7K24 in ... 40 5.2
7gb|DQ187985.1| Pseudomonas syringae tabtoxin biosynthetic gene c... 40 5.2
8emb|AL359951.4|CNS05TF3 Human chromosome 14 DNA sequence BAC R-1... 40 5.2
9emb|AL442163.5|CNS07ECT Human chromosome 14 DNA sequence BAC R-9... 40 5.2
10gb|M88485.1|PSETABA Pseudomonas syringae tabA and tabB genes, co... 40 5.2
11emb|AL450442.2|CNS07EEY Human chromosome 14 DNA sequence BAC R-2... 40 5.2
12gb|M63291.1|DROADHDS Drosophila silvestris alcohol dehydrogenase... 40 5.2 
>emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxygenase-like protein
            (lox gene)
          Length = 3123

 Score =  523 bits (264), Expect = e-145
 Identities = 278/285 (97%)
 Strand = Plus / Minus

                                                                        
Query: 107  ttagcatgtcccaacttttgaacagnnnnnnntgcaattaaatcttctcctatctgggcc 166
            |||||||||||||||||||||||||       ||||||||||||||||||||||||||||
Sbjct: 3109 ttagcatgtcccaacttttgaacagaaaaaaatgcaattaaatcttctcctatctgggcc 3050

                                                                        
Query: 167  caaatcaatggcgattcggccttcgtggcgagggcccaaatcaatggcgattctcttata 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3049 caaatcaatggcgattcggccttcgtggcgagggcccaaatcaatggcgattctcttata 2990

                                                                        
Query: 227  tgtacgtacttttccctgagacgttcccggcccaaagtatatcgaggctgaaaaattccc 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2989 tgtacgtacttttccctgagacgttcccggcccaaagtatatcgaggctgaaaaattccc 2930

                                                                        
Query: 287  acggtccgcttcaattcactctctgcgggctagatggtgacgctgttcgggacgcctcgg 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2929 acggtccgcttcaattcactctctgcgggctagatggtgacgctgttcgggacgcctcgg 2870

                                                         
Query: 347  caggtgatgcccggcccggacgacggcgccatgagctcgtacggc 391
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2869 caggtgatgcccggcccggacgacggcgccatgagctcgtacggc 2825
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>ref|XM_462649.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2700

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                        
Query: 326  acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 385
            |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 2690 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 2631

                  
Query: 386  tacggc 391
            ||||||
Sbjct: 2630 tacggc 2625
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                            
Query: 326      acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 385
                |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 22283720 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 22283661

                      
Query: 386      tacggc 391
                ||||||
Sbjct: 22283660 tacggc 22283655
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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
             complete sequence
          Length = 147214

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                         
Query: 326   acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 385
             |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 34622 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 34563

                   
Query: 386   tacggc 391
             ||||||
Sbjct: 34562 tacggc 34557
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>gb|AC147885.2| Xenopus tropicalis clone CH216-12C9, complete sequence
          Length = 222162

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ttaccattgatttacaaatg 40
             ||||||||||||||||||||
Sbjct: 70840 ttaccattgatttacaaatg 70859
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>emb|BX546446.15| Zebrafish DNA sequence from clone DKEY-7K24 in linkage group 6,
             complete sequence
          Length = 196818

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    taccattgatttacaaatgtttca 45
             |||||||| |||||||||||||||
Sbjct: 55164 taccattgctttacaaatgtttca 55187
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>gb|DQ187985.1| Pseudomonas syringae tabtoxin biosynthetic gene cluster, complete
            sequence
          Length = 22972

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  ccggcccggacgacggcgcc 376
            ||||||||||||||||||||
Sbjct: 3634 ccggcccggacgacggcgcc 3653
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>emb|AL359951.4|CNS05TF3 Human chromosome 14 DNA sequence BAC R-196A3 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176202

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     ccattgatttacaaatgttt 43
              ||||||||||||||||||||
Sbjct: 136492 ccattgatttacaaatgttt 136473
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>emb|AL442163.5|CNS07ECT Human chromosome 14 DNA sequence BAC R-90P16 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 167642

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   acaaatgtttcaagcatctg 53
            ||||||||||||||||||||
Sbjct: 6341 acaaatgtttcaagcatctg 6360
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>gb|M88485.1|PSETABA Pseudomonas syringae tabA and tabB genes, complete cds
          Length = 3378

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 357  ccggcccggacgacggcgcc 376
            ||||||||||||||||||||
Sbjct: 2761 ccggcccggacgacggcgcc 2742
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>emb|AL450442.2|CNS07EEY Human chromosome 14 DNA sequence BAC R-214N1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 145035

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     acaaatgtttcaagcatctg 53
              ||||||||||||||||||||
Sbjct: 128282 acaaatgtttcaagcatctg 128301
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>gb|M63291.1|DROADHDS Drosophila silvestris alcohol dehydrogenase gene, complete cds
          Length = 1635

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 220 tcttatatgtacgtacttttccctgaga 247
           |||||| ||||| |||||||||||||||
Sbjct: 189 tcttatttgtacatacttttccctgaga 162


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,498,854
Number of Sequences: 3902068
Number of extensions: 2498854
Number of successful extensions: 43186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43139
Number of HSP's gapped (non-prelim): 44
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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