Clone Name | rbastl40c07 |
---|---|
Clone Library Name | barley_pub |
>emb|BX294662.13| Zebrafish DNA sequence from clone DKEYP-117E6 in linkage group 20, complete sequence Length = 154558 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 300 ccagttttatttcttctaaatg 321 |||||||||||||||||||||| Sbjct: 128942 ccagttttatttcttctaaatg 128963
>gb|AC127172.13| Mus musculus strain C57BL/6J clone rp23-387d2 map 17, complete sequence Length = 203077 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 ggggacgggagagggagggga 190 ||||||||||||||||||||| Sbjct: 103538 ggggacgggagagggagggga 103558
>emb|CR376844.12| Zebrafish DNA sequence from clone DKEYP-51B7 in linkage group 8, complete sequence Length = 203472 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 301 cagttttatttcttctaaatg 321 ||||||||||||||||||||| Sbjct: 86656 cagttttatttcttctaaatg 86636
>gb|AC117459.6| Homo sapiens 3 BAC RP11-343L17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153618 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 cagttttatttcttctaaatgctct 325 ||||||||||||||| ||||||||| Sbjct: 130147 cagttttatttcttccaaatgctct 130123
>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0015J03, complete sequence Length = 165933 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 192 tacaacaatacacgatttaaaaatt 216 ||||| ||||||||||||||||||| Sbjct: 56719 tacaataatacacgatttaaaaatt 56743
>emb|BX294162.23| Zebrafish DNA sequence from clone CH211-270C5 in linkage group 10, complete sequence Length = 150791 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 62 cttacaatgaacaagtaaaacataa 86 |||||||||||||| |||||||||| Sbjct: 92299 cttacaatgaacaaataaaacataa 92323
>emb|BX927401.14| Zebrafish DNA sequence from clone CH211-210H11 in linkage group 19, complete sequence Length = 137958 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 301 cagttttatttcttctaaatg 321 ||||||||||||||||||||| Sbjct: 87517 cagttttatttcttctaaatg 87497
>gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0015J03, complete sequence Length = 135940 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 192 tacaacaatacacgatttaaaaatt 216 ||||| ||||||||||||||||||| Sbjct: 3282 tacaataatacacgatttaaaaatt 3258
>gb|AC160836.12| Medicago truncatula clone mth2-115l23, complete sequence Length = 116158 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tttatttcttctaaatgctct 325 ||||||||||||||||||||| Sbjct: 95921 tttatttcttctaaatgctct 95941
>emb|BX511229.6| Zebrafish DNA sequence from clone CH211-194H2 in linkage group 11, complete sequence Length = 211986 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 cagttttatttcttctaaatg 321 ||||||||||||||||||||| Sbjct: 94981 cagttttatttcttctaaatg 95001
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 192 tacaacaatacacgatttaaaaatt 216 ||||| ||||||||||||||||||| Sbjct: 4289178 tacaataatacacgatttaaaaatt 4289202
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 cacggggacggggacgggaga 181 ||||||||||||||||||||| Sbjct: 23026788 cacggggacggggacgggaga 23026808
>dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0415C01 Length = 138701 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 cacggggacggggacgggaga 181 ||||||||||||||||||||| Sbjct: 97194 cacggggacggggacgggaga 97214
>emb|BX548076.6| Zebrafish DNA sequence from clone CH211-154A22 in linkage group 15, complete sequence Length = 175161 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 62 cttacaatgaacaagtaaaacataa 86 |||||||||||||||||||| |||| Sbjct: 71620 cttacaatgaacaagtaaaaaataa 71596
>dbj|AK063740.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-F07, full insert sequence Length = 749 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 cacggggacggggacgggaga 181 ||||||||||||||||||||| Sbjct: 426 cacggggacggggacgggaga 446
>emb|BX294165.10| Zebrafish DNA sequence from clone DKEYP-20E4 in linkage group 22, complete sequence Length = 125073 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 62 cttacaatgaacaagtaaaacataa 86 |||||||||||||||||||| |||| Sbjct: 70680 cttacaatgaacaagtaaaaaataa 70656
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 192 tacaacaatacacgatttaaaaatt 216 ||||| ||||||||||||||||||| Sbjct: 4289999 tacaataatacacgatttaaaaatt 4290023
>emb|AL589878.12| Mouse DNA sequence from clone RP23-351C7 on chromosome 15, complete sequence Length = 203949 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 ggggacgggagagggagggga 190 ||||||||||||||||||||| Sbjct: 100060 ggggacgggagagggagggga 100040
>ref|XM_475386.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2493 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 tcaatccagttttatttctt 314 |||||||||||||||||||| Sbjct: 2493 tcaatccagttttatttctt 2474
>gb|AC121361.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009E21, complete sequence Length = 153214 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 tcaatccagttttatttctt 314 |||||||||||||||||||| Sbjct: 45411 tcaatccagttttatttctt 45430
>gb|AC104881.9| Mus musculus chromosome 18, clone RP23-244A24, complete sequence Length = 184796 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 taaaacataacttattatcttttg 100 |||||| ||||||||||||||||| Sbjct: 140955 taaaacttaacttattatcttttg 140978
>gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome Length = 490885 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 gttttatttcttctaaatgctctc 326 |||||||||||||||||| ||||| Sbjct: 291775 gttttatttcttctaaattctctc 291798
>gb|AC133100.5| Mus musculus BAC clone RP23-98O11 from chromosome 19, complete sequence Length = 204855 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 acgatttaaaaattggagcc 222 |||||||||||||||||||| Sbjct: 10002 acgatttaaaaattggagcc 9983
>gb|AC104683.3| Danio rerio clone 102M10, complete sequence Length = 51808 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 aacaatacacgatttaaaaa 214 |||||||||||||||||||| Sbjct: 30069 aacaatacacgatttaaaaa 30050
>gb|AC098728.3| Mus musculus BAC clone RP23-3H22 from 15, complete sequence Length = 245757 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 164 ggggacggggacgggagagggaggggac 191 ||||| ||||| |||||||||||||||| Sbjct: 74009 ggggagggggaggggagagggaggggac 74036
>gb|AC124231.17| Mus musculus chromosome 18, clone RP23-17N19, complete sequence Length = 219005 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 ggagagggaggggactacaa 196 |||||||||||||||||||| Sbjct: 179970 ggagagggaggggactacaa 179989
>gb|AC114486.2| Homo sapiens chromosome 1 clone RP11-371A23, complete sequence Length = 179070 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gggacgggagagggagggga 190 |||||||||||||||||||| Sbjct: 38668 gggacgggagagggagggga 38687
>gb|AC090095.7| Homo sapiens, clone RP11-296C13, complete sequence Length = 194074 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 aatgaacaagtaaaacataa 86 |||||||||||||||||||| Sbjct: 94450 aatgaacaagtaaaacataa 94431
>gb|AC018443.9|AC018443 Homo sapiens chromosome 8, clone RP11-674A24, complete sequence Length = 199810 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 aatgaacaagtaaaacataa 86 |||||||||||||||||||| Sbjct: 127445 aatgaacaagtaaaacataa 127426
>gb|AC053480.5|AC053480 Homo sapiens chromosome 8, clone RP11-526P7, complete sequence Length = 158267 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tctaaatgctctccctgccc 333 |||||||||||||||||||| Sbjct: 3537 tctaaatgctctccctgccc 3556
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 tcaatccagttttatttctt 314 |||||||||||||||||||| Sbjct: 22690212 tcaatccagttttatttctt 22690231
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 gggacggggacgggagagggaggg 188 ||||||||||||||| |||||||| Sbjct: 4946689 gggacggggacgggacagggaggg 4946666
>gb|AC011990.7| Homo sapiens chromosome 17, clone CTD-2378E21, complete sequence Length = 76700 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aagtgacacaagctggacac 163 |||||||||||||||||||| Sbjct: 73549 aagtgacacaagctggacac 73530
>emb|AL772151.17| Mouse DNA sequence from clone RP23-320C6 on chromosome 4, complete sequence Length = 128073 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ggggacgggagagggagggg 189 |||||||||||||||||||| Sbjct: 122278 ggggacgggagagggagggg 122297
>emb|AL935290.10| Zebrafish DNA sequence from clone CH211-270H11, complete sequence Length = 129665 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cataacttattatcttttgg 101 |||||||||||||||||||| Sbjct: 1812 cataacttattatcttttgg 1831
>gb|AC158772.5| Mus musculus chromosome 18, clone RP23-291M14, complete sequence Length = 198851 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 taaaacataacttattatcttttg 100 |||||| ||||||||||||||||| Sbjct: 24305 taaaacttaacttattatcttttg 24328
>dbj|AK065821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043G04, full insert sequence Length = 3034 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 tcaatccagttttatttctt 314 |||||||||||||||||||| Sbjct: 2667 tcaatccagttttatttctt 2648
>gb|AC005939.1|AC005939 Homo sapiens chromosome 17, clone hRPK.467_K_17, complete sequence Length = 179485 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aagtgacacaagctggacac 163 |||||||||||||||||||| Sbjct: 13382 aagtgacacaagctggacac 13363
>dbj|AP005853.3| Homo sapiens genomic DNA, chromosome 8q24, clone: KB265H3, complete sequence Length = 122073 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tctaaatgctctccctgccc 333 |||||||||||||||||||| Sbjct: 108678 tctaaatgctctccctgccc 108697
>emb|AL807377.10| Zebrafish DNA sequence from clone CH211-229G3, complete sequence Length = 170231 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 cagttttatttcttctaaatgctc 324 ||||||||| |||||||||||||| Sbjct: 2731 cagttttatatcttctaaatgctc 2708
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 acggggacggggacgggaga 181 |||||||||||||||||||| Sbjct: 1462780 acggggacggggacgggaga 1462761 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,177,730 Number of Sequences: 3902068 Number of extensions: 4177730 Number of successful extensions: 108416 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108154 Number of HSP's gapped (non-prelim): 262 length of query: 411 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 389 effective length of database: 17,147,199,772 effective search space: 6670260711308 effective search space used: 6670260711308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)