ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl40c04 |
|---|---|
| Clone Library Name | barley_pub |
>SPL12_ARATH (Q9S7P5) Squamosa promoter-binding-like protein 12| Length = 927 Score = 56.2 bits (134), Expect = 4e-08 Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Frame = -1 Query: 365 TSAARCNICSRQAKMYPSSFARTFLYRPAMFTVMGVAVICVCVGILLHTLPKV-YAAPNF 189 T +C +C + +++ ++ ++ YRPAM +++ +A +CVCV +L + P+V Y F Sbjct: 859 TQINQCKLCDHK-RVFVTTHHKSVAYRPAMLSMVAIAAVCVCVALLFKSCPEVLYVFQPF 917 Query: 188 RWELLERG 165 RWELLE G Sbjct: 918 RWELLEYG 925
>SPL1_ARATH (Q9SMX9) Squamosa promoter-binding-like protein 1| Length = 881 Score = 53.5 bits (127), Expect = 2e-07 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Frame = -1 Query: 350 CNICSRQAKMYPSSFARTFLYRPAMFTVMGVAVICVCVGILLHTLPKV-YAAPNFRWELL 174 C +C K+ + R+ YRPAM +++ +A +CVCV +L + P+V Y FRWELL Sbjct: 819 CKLCDH--KLVYGTTRRSVAYRPAMLSMVAIAAVCVCVALLFKSCPEVLYVFQPFRWELL 876 Query: 173 ERG 165 + G Sbjct: 877 DYG 879
>SPL16_ARATH (Q700C2) Squamosa promoter-binding-like protein 16 (SPL1-related| protein 3) Length = 988 Score = 43.9 bits (102), Expect = 2e-04 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Frame = -1 Query: 350 CNICSRQAKMYPS--SFARTFLYRPAMFTVMGVAVICVCVGILLHTLPKVYAAPNFRWEL 177 CN C+ A Y S +R P + +++ VA +CVCV + +H P V +F W Sbjct: 923 CNTCASVALKYQRKVSGSRRLFPTPIIHSMLAVATVCVCVCVFMHAFPMVRQGSHFSWGG 982 Query: 176 LERGAM 159 L+ G++ Sbjct: 983 LDYGSI 988
>SPL14_ARATH (Q8RY95) Squamosa promoter-binding-like protein 14 (SPL1-related| protein 2) Length = 1035 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = -1 Query: 362 SAARCNICSRQAKMYPS--SFARTFLYRPAMFTVMGVAVICVCVGILLHTLPKVYAAPNF 189 S++ C C+ A Y S ++ P + +++ VA +CVCV + +H P V +F Sbjct: 966 SSSSCASCATVALKYQRRVSGSQRLFPTPIIHSMLAVATVCVCVCVFMHAFPIVRQGSHF 1025 Query: 188 RWELLERGAM 159 W L+ G++ Sbjct: 1026 SWGGLDYGSI 1035
>NUP1_YEAST (P20676) Nucleoporin NUP1 (Nuclear pore protein NUP1)| Length = 1076 Score = 30.0 bits (66), Expect = 2.8 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = +1 Query: 43 AIFKYNGTSSHNYMFV*SNNHTKTLNSNTPNLISTRTPHMAPRSNNSHLKFG 198 ++F NG ++ N +F SNN + + N S+ TP P N S L G Sbjct: 942 SVFNMNGNTNANTVFAGSNNQPHQSQTPSFNTNSSFTPSTVPNINFSGLNGG 993
>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1904 Score = 30.0 bits (66), Expect = 2.8 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = +3 Query: 216 EGMEEDPDANTDHGDAHHGEHCRPVQEGPRKGTWVHLSLTTANVAPCGGCCCHWHGFADL 395 EG EED D+ H HH H ++G V TA+ + GG H H L Sbjct: 20 EGCEEDRDSRPHHHHRHHHHHHHHRRDGDLPAGAVAGEAATAS-SNAGGANAHQHSTFSL 78 Query: 396 QA 401 ++ Sbjct: 79 RS 80
>HISX_STRCO (P16245) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 441 Score = 29.6 bits (65), Expect = 3.7 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%) Frame = +3 Query: 309 GTWVHLSLT-----TANVAPCGGCCCHWHGFADLQADITCLHPIGYCR 437 G W +SL + +V P GGC CH G + +Q+ + +H + Y R Sbjct: 357 GPWAPVSLGDYAAGSNHVLPTGGCACHSSGLS-VQSFLRGIHIVDYTR 403
>RL18_STAS1 (Q49ZF2) 50S ribosomal protein L18| Length = 120 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -3 Query: 198 TKFQMGVVRARSHVRGACRNKVRGVAVKSFSVVVRSNKHV 79 +K VR + H R RNK+ G A K + RSNKH+ Sbjct: 3 SKIDKNKVRLKRHAR--VRNKLAGTAEKPRLNIYRSNKHI 40
>PROP_PONPY (Q5RBP8) Properdin precursor (Factor P)| Length = 469 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/41 (31%), Positives = 17/41 (41%) Frame = +3 Query: 237 DANTDHGDAHHGEHCRPVQEGPRKGTWVHLSLTTANVAPCG 359 D + G HC +Q P KG+W S + PCG Sbjct: 356 DGHRCAGQQQDIRHCYSIQHCPLKGSWSEWSTWGLCIPPCG 396
>YAOE_SCHPO (Q10093) Hypothetical protein C11D3.14c in chromosome I| Length = 1260 Score = 28.9 bits (63), Expect = 6.3 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +1 Query: 286 LYRKVLAKELGYILA*RLQMLHLAADVVVTGMALQISR----LISPAFTPSVIAGHMLL 450 +Y V E+G + Q+ L ++TG A+ + LI P+FT + A H+LL Sbjct: 656 MYTPVYFAEVGKVNCHVYQLSSLPVHSLITGPAVIVDTTQTLLIEPSFTAKIFARHVLL 714
>RL18_GEOKA (Q5L3S3) 50S ribosomal protein L18| Length = 120 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -3 Query: 198 TKFQMGVVRARSHVRGACRNKVRGVAVKSFSVVVRSNKHV 79 TK VR + H R R K+ G A + V RSNKH+ Sbjct: 3 TKVDRNAVRKKRHAR--IRKKIFGTAERPRLSVFRSNKHI 40
>HISX_STRAW (Q82AA6) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 441 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%) Frame = +3 Query: 309 GTWVHLSLT-----TANVAPCGGCCCHWHGFADLQADITCLHPIGYCR 437 G W +SL + +V P GGC CH G + +Q+ + +H + Y + Sbjct: 357 GPWAPVSLGDYAAGSNHVLPTGGCACHSSGLS-VQSFLRGIHIVDYTK 403 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,438,474 Number of Sequences: 219361 Number of extensions: 1164246 Number of successful extensions: 2970 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2890 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2966 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
