ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106181.1| Zea mays PCO111565 mRNA sequence 101 2e-18
2ref|XM_470170.1| Oryza sativa (japonica cultivar-group), mRNA 88 3e-14
3ref|XM_470314.1| Oryza sativa (japonica cultivar-group), mRNA 88 3e-14
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 88 3e-14
5gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genom... 88 3e-14
6gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genom... 88 3e-14
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
8dbj|AK072164.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
9dbj|AK069847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
10gb|AY105715.1| Zea mays PCO111563 mRNA sequence 68 3e-08
11ref|XM_526338.1| PREDICTED: Pan troglodytes similar to zinc fing... 42 1.5
12gb|AC150386.2| Branchiostoma floridae clone CH302-103G16, comple... 42 1.5
13gb|AC135415.27| Medicago truncatula clone mth2-10b9, complete se... 42 1.5
14emb|AL645792.7| Zebrafish DNA sequence from clone RP71-1D10 in l... 42 1.5
15emb|AJ564103.1|HSA564103 Homo sapiens KRT2B gene for keratin 2p,... 42 1.5
16dbj|AK126595.1| Homo sapiens cDNA FLJ44632 fis, clone BRACE20193... 42 1.5
17ref|NM_015848.1| Homo sapiens cytokeratin 2 (KRT2B), mRNA 42 1.5
18gb|AC092959.6| Homo sapiens 3 BAC RP11-649A16 (Roswell Park Canc... 42 1.5
19gb|AC139763.4| Homo sapiens 12 BAC CTD-2325H11 (Cal Tech Human B... 42 1.5
20gb|DQ340766.1| Camellia sinensis alpha tubulin 1 (Tua1) mRNA, co... 42 1.5
21gb|M99063.1|HUMCYT2A Homo sapiens cytokeratin 2 mRNA, complete cds 42 1.5
22gb|BC077915.1| Xenopus laevis B-cell CLL/lymphoma 6 (zinc finger... 40 6.1
23gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.1
24ref|XM_424947.1| PREDICTED: Gallus gallus similar to TBC1 domain... 40 6.1
25ref|XM_572429.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 6.1
26gb|AC151345.2| Xenopus tropicalis clone ISB-383E8, complete sequ... 40 6.1
27gb|AC007458.14| Homo sapiens 12 BAC RP11-444B24 (Roswell Park Ca... 40 6.1
28emb|BX005313.4| Zebrafish DNA sequence from clone CH211-119C24, ... 40 6.1 
>gb|AY106181.1| Zea mays PCO111565 mRNA sequence
          Length = 1196

 Score =  101 bits (51), Expect = 2e-18
 Identities = 123/147 (83%)
 Strand = Plus / Minus

                                                                        
Query: 158  acatggctccgcgctctaacaactcccatctgaaatttggtgcggcataaaccttgggga 217
            |||||| ||| ||||| | |||||||||||||||  | || |||||||||||| |||| |
Sbjct: 1079 acatgggtccacgctccagcaactcccatctgaatgtgggcgcggcataaaccctgggaa 1020

                                                                        
Query: 218  gggtatggaggaggatcccgacgcaaacacagatcacggcgacgcccatcacggtgaaca 277
             |||||||||||| || || ||||| ||||||| ||| || || |||||||| || ||||
Sbjct: 1019 aggtatggaggagtatgcccacgcagacacagaccacagcaactcccatcacagtcaaca 960

                                       
Query: 278  ttgccggcctgtacaggaaggtcctcg 304
            | || |||||||| |||||||||||||
Sbjct: 959  tcgctggcctgtaaaggaaggtcctcg 933
to top
>ref|XM_470170.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1835

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 125/152 (82%)
 Strand = Plus / Minus

                                                                        
Query: 154  cctcacatggctccgcgctctaacaactcccatctgaaatttggtgcggcataaaccttg 213
            |||||||| | ||| || ||||||| ||||||||||||  | || || ||||||||||| 
Sbjct: 1391 cctcacattggtccacgttctaacagctcccatctgaatgtaggagctgcataaaccttt 1332

                                                                        
Query: 214  gggagggtatggaggaggatcccgacgcaaacacagatcacggcgacgcccatcacggtg 273
            ||   ||| ||||| || |  |||||||| || ||||| ||||||| |||||||||||| 
Sbjct: 1331 ggacaggtgtggagtagcaggccgacgcagacgcagatgacggcgatgcccatcacggtc 1272

                                            
Query: 274  aacattgccggcctgtacaggaaggtcctcgc 305
            | ||| || |||||||||||||||||||||||
Sbjct: 1271 agcatcgctggcctgtacaggaaggtcctcgc 1240



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 390  gatctccaggctgatatcacctgccttcaccccatcggttattgcaggg 438
            ||||||||||||||  ||||| | |||||| |||||||||||| |||||
Sbjct: 1164 gatctccaggctgacttcaccaggcttcacaccatcggttattacaggg 1116
to top
>ref|XM_470314.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3868

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 125/152 (82%)
 Strand = Plus / Minus

                                                                        
Query: 154  cctcacatggctccgcgctctaacaactcccatctgaaatttggtgcggcataaaccttg 213
            |||||||| | ||| || ||||||| ||||||||||||  | || || ||||||||||| 
Sbjct: 3433 cctcacattggtccacgttctaacagctcccatctgaatgtaggagctgcataaaccttt 3374

                                                                        
Query: 214  gggagggtatggaggaggatcccgacgcaaacacagatcacggcgacgcccatcacggtg 273
            ||   ||| ||||| || |  |||||||| || ||||| ||||||| |||||||||||| 
Sbjct: 3373 ggacaggtgtggagtagcaggccgacgcagacgcagatgacggcgatgcccatcacggtc 3314

                                            
Query: 274  aacattgccggcctgtacaggaaggtcctcgc 305
            | ||| || |||||||||||||||||||||||
Sbjct: 3313 agcatcgctggcctgtacaggaaggtcctcgc 3282



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 390  gatctccaggctgatatcacctgccttcaccccatcggttattgcaggg 438
            ||||||||||||||  ||||| | |||||| |||||||||||| |||||
Sbjct: 3206 gatctccaggctgacttcaccaggcttcacaccatcggttattacaggg 3158
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 125/152 (82%)
 Strand = Plus / Plus

                                                                            
Query: 154      cctcacatggctccgcgctctaacaactcccatctgaaatttggtgcggcataaaccttg 213
                |||||||| | ||| || ||||||| ||||||||||||  | || || ||||||||||| 
Sbjct: 34704604 cctcacattggtccacgttctaacagctcccatctgaatgtaggagctgcataaaccttt 34704663

                                                                            
Query: 214      gggagggtatggaggaggatcccgacgcaaacacagatcacggcgacgcccatcacggtg 273
                ||   ||| ||||| || |  |||||||| || ||||| ||||||| |||||||||||| 
Sbjct: 34704664 ggacaggtgtggagtagcaggccgacgcagacgcagatgacggcgatgcccatcacggtc 34704723

                                                
Query: 274      aacattgccggcctgtacaggaaggtcctcgc 305
                | ||| || |||||||||||||||||||||||
Sbjct: 34704724 agcatcgctggcctgtacaggaaggtcctcgc 34704755



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 390      gatctccaggctgatatcacctgccttcaccccatcggttattgcaggg 438
                ||||||||||||||  ||||| | |||||| |||||||||||| |||||
Sbjct: 34704831 gatctccaggctgacttcaccaggcttcacaccatcggttattacaggg 34704879
to top
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete
              sequence
          Length = 164352

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 125/152 (82%)
 Strand = Plus / Minus

                                                                          
Query: 154    cctcacatggctccgcgctctaacaactcccatctgaaatttggtgcggcataaaccttg 213
              |||||||| | ||| || ||||||| ||||||||||||  | || || ||||||||||| 
Sbjct: 158046 cctcacattggtccacgttctaacagctcccatctgaatgtaggagctgcataaaccttt 157987

                                                                          
Query: 214    gggagggtatggaggaggatcccgacgcaaacacagatcacggcgacgcccatcacggtg 273
              ||   ||| ||||| || |  |||||||| || ||||| ||||||| |||||||||||| 
Sbjct: 157986 ggacaggtgtggagtagcaggccgacgcagacgcagatgacggcgatgcccatcacggtc 157927

                                              
Query: 274    aacattgccggcctgtacaggaaggtcctcgc 305
              | ||| || |||||||||||||||||||||||
Sbjct: 157926 agcatcgctggcctgtacaggaaggtcctcgc 157895



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                               
Query: 390    gatctccaggctgatatcacctgccttcaccccatcggttattgcaggg 438
              ||||||||||||||  ||||| | |||||| |||||||||||| |||||
Sbjct: 157819 gatctccaggctgacttcaccaggcttcacaccatcggttattacaggg 157771
to top
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
              sequence
          Length = 164236

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 125/152 (82%)
 Strand = Plus / Plus

                                                                          
Query: 154    cctcacatggctccgcgctctaacaactcccatctgaaatttggtgcggcataaaccttg 213
              |||||||| | ||| || ||||||| ||||||||||||  | || || ||||||||||| 
Sbjct: 162321 cctcacattggtccacgttctaacagctcccatctgaatgtaggagctgcataaaccttt 162380

                                                                          
Query: 214    gggagggtatggaggaggatcccgacgcaaacacagatcacggcgacgcccatcacggtg 273
              ||   ||| ||||| || |  |||||||| || ||||| ||||||| |||||||||||| 
Sbjct: 162381 ggacaggtgtggagtagcaggccgacgcagacgcagatgacggcgatgcccatcacggtc 162440

                                              
Query: 274    aacattgccggcctgtacaggaaggtcctcgc 305
              | ||| || |||||||||||||||||||||||
Sbjct: 162441 agcatcgctggcctgtacaggaaggtcctcgc 162472



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                               
Query: 390    gatctccaggctgatatcacctgccttcaccccatcggttattgcaggg 438
              ||||||||||||||  ||||| | |||||| |||||||||||| |||||
Sbjct: 162548 gatctccaggctgacttcaccaggcttcacaccatcggttattacaggg 162596
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 125/152 (82%)
 Strand = Plus / Plus

                                                                            
Query: 154      cctcacatggctccgcgctctaacaactcccatctgaaatttggtgcggcataaaccttg 213
                |||||||| | ||| || ||||||| ||||||||||||  | || || ||||||||||| 
Sbjct: 34794676 cctcacattggtccacgttctaacagctcccatctgaatgtaggagctgcataaaccttt 34794735

                                                                            
Query: 214      gggagggtatggaggaggatcccgacgcaaacacagatcacggcgacgcccatcacggtg 273
                ||   ||| ||||| || |  |||||||| || ||||| ||||||| |||||||||||| 
Sbjct: 34794736 ggacaggtgtggagtagcaggccgacgcagacgcagatgacggcgatgcccatcacggtc 34794795

                                                
Query: 274      aacattgccggcctgtacaggaaggtcctcgc 305
                | ||| || |||||||||||||||||||||||
Sbjct: 34794796 agcatcgctggcctgtacaggaaggtcctcgc 34794827



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 390      gatctccaggctgatatcacctgccttcaccccatcggttattgcaggg 438
                ||||||||||||||  ||||| | |||||| |||||||||||| |||||
Sbjct: 34794903 gatctccaggctgacttcaccaggcttcacaccatcggttattacaggg 34794951
to top
>dbj|AK072164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130O11, full
            insert sequence
          Length = 2938

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 125/152 (82%)
 Strand = Plus / Minus

                                                                        
Query: 154  cctcacatggctccgcgctctaacaactcccatctgaaatttggtgcggcataaaccttg 213
            |||||||| | ||| || ||||||| ||||||||||||  | || || ||||||||||| 
Sbjct: 2755 cctcacattggtccacgttctaacagctcccatctgaatgtaggagctgcataaaccttt 2696

                                                                        
Query: 214  gggagggtatggaggaggatcccgacgcaaacacagatcacggcgacgcccatcacggtg 273
            ||   ||| ||||| || |  |||||||| || ||||| ||||||| |||||||||||| 
Sbjct: 2695 ggacaggtgtggagtagcaggccgacgcagacgcagatgacggcgatgcccatcacggtc 2636

                                            
Query: 274  aacattgccggcctgtacaggaaggtcctcgc 305
            | ||| || |||||||||||||||||||||||
Sbjct: 2635 agcatcgctggcctgtacaggaaggtcctcgc 2604



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 390  gatctccaggctgatatcacctgccttcaccccatcggttattgcaggg 438
            ||||||||||||||  ||||| | |||||| |||||||||||| |||||
Sbjct: 2528 gatctccaggctgacttcaccaggcttcacaccatcggttattacaggg 2480
to top
>dbj|AK069847.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034C10, full
            insert sequence
          Length = 3781

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 125/152 (82%)
 Strand = Plus / Minus

                                                                        
Query: 154  cctcacatggctccgcgctctaacaactcccatctgaaatttggtgcggcataaaccttg 213
            |||||||| | ||| || ||||||| ||||||||||||  | || || ||||||||||| 
Sbjct: 3346 cctcacattggtccacgttctaacagctcccatctgaatgtaggagctgcataaaccttt 3287

                                                                        
Query: 214  gggagggtatggaggaggatcccgacgcaaacacagatcacggcgacgcccatcacggtg 273
            ||   ||| ||||| || |  |||||||| || ||||| ||||||| |||||||||||| 
Sbjct: 3286 ggacaggtgtggagtagcaggccgacgcagacgcagatgacggcgatgcccatcacggtc 3227

                                            
Query: 274  aacattgccggcctgtacaggaaggtcctcgc 305
            | ||| || |||||||||||||||||||||||
Sbjct: 3226 agcatcgctggcctgtacaggaaggtcctcgc 3195



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 390  gatctccaggctgatatcacctgccttcaccccatcggttattgcaggg 438
            ||||||||||||||  ||||| | |||||| |||||||||||| |||||
Sbjct: 3119 gatctccaggctgacttcaccaggcttcacaccatcggttattacaggg 3071
to top
>gb|AY105715.1| Zea mays PCO111563 mRNA sequence
          Length = 917

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 119/146 (81%), Gaps = 1/146 (0%)
 Strand = Plus / Minus

                                                                       
Query: 158 acatggctccgcgctctaacaactcccatctgaaatttggtgcggcataaacct-tgggg 216
           |||||| ||| ||||| | || ||||||||||||  | || ||||||||||||  |||| 
Sbjct: 826 acatgggtccacgctccagcagctcccatctgaatgtgggcgcggcataaacccctggga 767

                                                                       
Query: 217 agggtatggaggaggatcccgacgcaaacacagatcacggcgacgcccatcacggtgaac 276
           | ||| |||||||| || || ||||| ||||| | ||| ||||| |||||||| || |||
Sbjct: 766 aaggtgtggaggagtatgcccacgcagacacaaaccacagcgactcccatcacagttaac 707

                                     
Query: 277 attgccggcctgtacaggaaggtcct 302
           ||||| ||||| || |||||||||||
Sbjct: 706 attgctggcctataaaggaaggtcct 681
to top
>ref|XM_526338.1| PREDICTED: Pan troglodytes similar to zinc finger protein of the
           cerebellum 4; zinc family member 4 protein HZIC4
           (LOC470955), mRNA
          Length = 1962

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 212 tggggagggtatggaggagga 232
           |||||||||||||||||||||
Sbjct: 37  tggggagggtatggaggagga 17
to top
>gb|AC150386.2| Branchiostoma floridae clone CH302-103G16, complete sequence
          Length = 195926

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    ttggggagggtatggaggagg 231
              |||||||||||||||||||||
Sbjct: 153942 ttggggagggtatggaggagg 153922



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    ttggggagggtatggaggagg 231
              |||||||||||||||||||||
Sbjct: 153227 ttggggagggtatggaggagg 153207
to top
>gb|AC135415.27| Medicago truncatula clone mth2-10b9, complete sequence
          Length = 130045

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    ttgtttgatctaacaaccaca 106
             |||||||||||||||||||||
Sbjct: 11564 ttgtttgatctaacaaccaca 11544
to top
>emb|AL645792.7| Zebrafish DNA sequence from clone RP71-1D10 in linkage group 14
             Contains two novel genes similar to MATR3 (matrin 3), a
             novel gene similar to PDE6A (cGMP-specific
             phosphodiesterase 6A alpha (rod)), a novel gene similar to
             PERC (PGC-1-related estrogen receptor alpha coactivator)
             and two CpG islands, complete sequence
          Length = 170221

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    tcttcacacaattacatgttt 87
             |||||||||||||||||||||
Sbjct: 12636 tcttcacacaattacatgttt 12656
to top
>emb|AJ564103.1|HSA564103 Homo sapiens KRT2B gene for keratin 2p, exons 1-9
          Length = 15792

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 369   tgtcactggcatggctttgca 389
             |||||||||||||||||||||
Sbjct: 11595 tgtcactggcatggctttgca 11575
to top
>dbj|AK126595.1| Homo sapiens cDNA FLJ44632 fis, clone BRACE2019348, moderately
            similar to Zinc finger protein ZIC4
          Length = 3317

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 212  tggggagggtatggaggagga 232
            |||||||||||||||||||||
Sbjct: 1459 tggggagggtatggaggagga 1439
to top
>ref|NM_015848.1| Homo sapiens cytokeratin 2 (KRT2B), mRNA
          Length = 2513

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 369  tgtcactggcatggctttgca 389
            |||||||||||||||||||||
Sbjct: 1037 tgtcactggcatggctttgca 1017
to top
>gb|AC092959.6| Homo sapiens 3 BAC RP11-649A16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 179714

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 212    tggggagggtatggaggagga 232
              |||||||||||||||||||||
Sbjct: 127274 tggggagggtatggaggagga 127254
to top
>gb|AC139763.4| Homo sapiens 12 BAC CTD-2325H11 (Cal Tech Human BAC Library D)
            complete sequence
          Length = 14039

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 369  tgtcactggcatggctttgca 389
            |||||||||||||||||||||
Sbjct: 4620 tgtcactggcatggctttgca 4640
to top
>gb|DQ340766.1| Camellia sinensis alpha tubulin 1 (Tua1) mRNA, complete cds
          Length = 915

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 211 ttggggagggtatggaggagg 231
           |||||||||||||||||||||
Sbjct: 609 ttggggagggtatggaggagg 629
to top
>gb|M99063.1|HUMCYT2A Homo sapiens cytokeratin 2 mRNA, complete cds
          Length = 2513

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 369  tgtcactggcatggctttgca 389
            |||||||||||||||||||||
Sbjct: 1037 tgtcactggcatggctttgca 1017
to top
>gb|BC077915.1| Xenopus laevis B-cell CLL/lymphoma 6 (zinc finger protein 51), mRNA
            (cDNA clone MGC:80825 IMAGE:5513995), complete cds
          Length = 4376

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  taaaactcttaacagcaaca 127
            ||||||||||||||||||||
Sbjct: 4330 taaaactcttaacagcaaca 4349
to top
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
              sequence
          Length = 1194300

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    ggggagggtatggaggagga 232
              ||||||||||||||||||||
Sbjct: 412208 ggggagggtatggaggagga 412227
to top
>ref|XM_424947.1| PREDICTED: Gallus gallus similar to TBC1 domain family member 2
            (Prostate antigen recognized and indentified by SEREX)
            (PARIS-1) (LOC427374), mRNA
          Length = 2635

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   tgcaatttttaaatacaacg 61
            ||||||||||||||||||||
Sbjct: 1962 tgcaatttttaaatacaacg 1981
to top
>ref|XM_572429.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNH02530) partial mRNA
          Length = 1572

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 ggggagggtatggaggagga 232
           ||||||||||||||||||||
Sbjct: 704 ggggagggtatggaggagga 723
to top
>gb|AC151345.2| Xenopus tropicalis clone ISB-383E8, complete sequence
          Length = 85312

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 88    gtttgatctaacaaccacactaaa 111
             ||||||||||||||| ||||||||
Sbjct: 22322 gtttgatctaacaacgacactaaa 22345
to top
>gb|AC007458.14| Homo sapiens 12 BAC RP11-444B24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 190961

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     acacaattacatgtttgttt 91
              ||||||||||||||||||||
Sbjct: 118172 acacaattacatgtttgttt 118153
to top
>emb|BX005313.4| Zebrafish DNA sequence from clone CH211-119C24, complete sequence
          Length = 173719

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     acaattacatgtttgtttga 93
              ||||||||||||||||||||
Sbjct: 132257 acaattacatgtttgtttga 132276


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,234,237
Number of Sequences: 3902068
Number of extensions: 4234237
Number of successful extensions: 76790
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76686
Number of HSP's gapped (non-prelim): 95
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top