ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl40c03 |
|---|---|
| Clone Library Name | barley_pub |
>R1AB_PEDV7 (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown protein 1; 3C-like Length = 6781 Score = 30.0 bits (66), Expect = 1.7 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -1 Query: 177 SVVVRPLVMDRFVSCKGYCVTFHWVLG 97 S++ RP+ + FV CK C ++HW +G Sbjct: 232 SIIRRPVFLHAFVKCK--CGSYHWTVG 256
>GATA6_HUMAN (Q92908) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 449 Score = 30.0 bits (66), Expect = 1.7 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +1 Query: 13 LSSPYQHHLQHNHHFPSSTNPW 78 L+ Y HH H+HH PS +P+ Sbjct: 173 LNGTYHHHHHHHHHHPSPYSPY 194
>CCDC9_HUMAN (Q9Y3X0) Coiled-coil domain-containing protein 9| Length = 531 Score = 29.3 bits (64), Expect = 3.0 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +1 Query: 58 PSSTNPWQLITAPTQNPMKSNTIPLARHKPIHDQRTDN 171 P + P T+P + PM+ IP H+P D+ +N Sbjct: 379 PETPQPTSPETSPKETPMQPPEIPAPAHRPPEDEGEEN 416
>HXA1_MOUSE (P09022) Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein| ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399) Length = 331 Score = 29.3 bits (64), Expect = 3.0 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +1 Query: 13 LSSPYQHHLQHNHHFPSS 66 +SSP+ HH H+HH P + Sbjct: 56 ISSPHHHHHHHHHHHPQT 73
>AHC1_YEAST (Q12433) Protein AHC1 (ADA HAT complex component 1)| Length = 566 Score = 29.3 bits (64), Expect = 3.0 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 8/44 (18%) Frame = +1 Query: 13 LSSPYQHHLQHNHHFPSS--------TNPWQLITAPTQNPMKSN 120 + SP Q LQH HH P+S TN +Q+ T + +++N Sbjct: 1 MMSPAQDKLQHQHHNPNSSSSSSSKMTNVYQVTTPKSPQDLENN 44
>HUNB_DROTA (O46260) Protein hunchback (Fragments)| Length = 192 Score = 28.9 bits (63), Expect = 3.9 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = +1 Query: 25 YQHHLQHNHHFPSSTN---PWQLITAPTQNPMKSNTIPLARHKPIHDQRTDNYRKKE 186 + HH H+HH S++N P Q P+ NP + + L ++ Q+ +++++ Sbjct: 20 HHHHAHHSHHADSNSNASSPHQ-SPLPSPNPPSNTNLQLEQYLKQQQQQQQQHQQQQ 75
>ESYN_GIBPU (Q00868) Enniatin synthetase [Includes: N-methylcyclopeptide| synthetase (EC 6.3.2.-); S-adenosyl-L-methionine-dependent N-methyltransferase (EC 2.1.1.-)] (Fragment) Length = 983 Score = 28.9 bits (63), Expect = 3.9 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 49 HHFPSSTNPWQLITAPTQNPMKSN 120 HHFPSS LI PT N ++S+ Sbjct: 783 HHFPSSNTDRTLIQFPTDNQLRSS 806
>SNF1_CANTR (O94168) Carbon catabolite derepressing protein kinase (EC| 2.7.11.1) Length = 619 Score = 28.1 bits (61), Expect = 6.6 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Frame = +1 Query: 16 SSPYQHHLQHNHHFPSSTNPWQLITA-PTQNP 108 S +QHH H+HH S P Q I P NP Sbjct: 14 SGDHQHHHHHHHHHHHSQQPAQPIPIDPNVNP 45
>C18AA_PAEPP (Q45358) Parasporal crystal protein cry18Aa (Parasporal| delta-endotoxin CryXVIIIA(a)) (Crystaline parasporal protoxin) (79 kDa crystal protein) Length = 706 Score = 28.1 bits (61), Expect = 6.6 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 106 PMKSNTIPLARHKPIHDQRTDNYRKKETK 192 P+ +NTI PI+ RTD +RKK T+ Sbjct: 74 PIDNNTICSTDFTPINVMRTDPFRKKSTQ 102
>TCF8_RAT (Q62947) Transcription factor 8 (Zinc finger homeodomain| enhancer-binding protein) (Zfhep) Length = 1109 Score = 27.7 bits (60), Expect = 8.7 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +3 Query: 99 PKPNEK*HNTPCKTQTDP*PADGQLPKE 182 P P N P KT+ P P DG P+E Sbjct: 623 PSPGPGSGNIPAKTEEQPQPVDGNEPQE 650
>TCF8_MOUSE (Q64318) Transcription factor 8 (Zinc finger homeobox protein 1a)| (MEB1) (Delta EF1) Length = 1117 Score = 27.7 bits (60), Expect = 8.7 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +3 Query: 99 PKPNEK*HNTPCKTQTDP*PADGQLPKE 182 P P N P KT P PADG P+E Sbjct: 623 PSPGTGSVNIPTKTDEQPQPADGNEPQE 650
>HUNB_DROLI (O46244) Protein hunchback (Fragments)| Length = 198 Score = 27.7 bits (60), Expect = 8.7 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +1 Query: 25 YQHHLQHNHH-FPSSTNPWQLITAPTQNPMKSNTIP 129 + HH H+HH P +N ++P Q+P+ S P Sbjct: 20 HHHHAHHSHHQHPHDSNSNSNASSPHQSPLPSPNPP 55
>HUNB_DRODS (O46240) Protein hunchback (Fragments)| Length = 198 Score = 27.7 bits (60), Expect = 8.7 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +1 Query: 25 YQHHLQHNHH-FPSSTNPWQLITAPTQNPMKSNTIP 129 + HH H+HH P +N ++P Q+P+ S P Sbjct: 20 HHHHAHHSHHQHPHDSNSNSNASSPHQSPLPSPNPP 55
>HUNB_DROCY (O46238) Protein hunchback (Fragments)| Length = 198 Score = 27.7 bits (60), Expect = 8.7 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +1 Query: 25 YQHHLQHNHH-FPSSTNPWQLITAPTQNPMKSNTIP 129 + HH H+HH P +N ++P Q+P+ S P Sbjct: 20 HHHHAHHSHHQHPHDSNSNSNASSPHQSPLPSPNPP 55 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,236,387 Number of Sequences: 219361 Number of extensions: 498882 Number of successful extensions: 1877 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1837 length of database: 80,573,946 effective HSP length: 40 effective length of database: 71,799,506 effective search space used: 1723188144 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
