ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, co... 315 3e-83
2gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 42 0.62
3gb|AF514331.1| Scyllarus arctus 28S ribosomal RNA gene, partial ... 42 0.62
4emb|AJ632310.1| Cotesia congregata virus complete genome, segmen... 42 0.62
5emb|AL445074.4|CNS07ECX Human chromosome 14 DNA sequence BAC R-3... 42 0.62
6gb|DQ205532.1| Adiantum reniforme var. sinense microsatellite Ar... 40 2.4
7gb|AC102475.7| Mus musculus chromosome 8, clone RP24-393D2, comp... 40 2.4
8gb|AC162610.2| Mus musculus chromosome 5, clone RP23-314N3, comp... 40 2.4
9gb|AC103930.10| Mus musculus chromosome 5, clone RP23-238D18, co... 40 2.4
10emb|AL160154.11| Human DNA sequence from clone RP11-447N10 on ch... 40 2.4
11emb|BX251412.1| Tropheryma whipplei TW08/27, complete genome; se... 40 2.4
12emb|AL773511.5| Mouse DNA sequence from clone RP24-66J23 on chro... 40 2.4
13gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome 40 2.4
14gb|AC122011.3| Mus musculus chromosome 10 clone RP24-352E6, comp... 38 9.7
15ref|XM_640461.1| Dictyostelium discoideum hypothetical protein (... 38 9.7
16gb|AC146526.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
17gb|AC111016.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
18gb|AC163655.3| Mus musculus BAC clone RP23-264P21 from chromosom... 38 9.7
19gb|AC091395.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 38 9.7
20gb|AC129336.4| Mus musculus BAC clone RP23-113I7 from chromosome... 38 9.7
21gb|AC121876.2| Mus musculus BAC clone RP24-127E16 from 6, comple... 38 9.7
22gb|AC145828.1| Pan troglodytes BAC clone RP43-7E4 from 7, comple... 38 9.7
23emb|AL157781.8| Human DNA sequence from clone RP11-115N6 on chro... 38 9.7
24emb|AL136373.21| Human DNA sequence from clone RP11-49P4 on chro... 38 9.7
25gb|AF406623.1| Gibberella acuminata strain BBA71373 28S ribosoma... 38 9.7
26emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome 38 9.7
27emb|BX537319.9| Zebrafish DNA sequence from clone CH211-248N8 in... 38 9.7
28gb|AC092808.2| Homo sapiens chromosome 1 clone RP11-360C2, compl... 38 9.7
29gb|AC073391.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
30gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete s... 38 9.7
31dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
32dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
33dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
35dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
36dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
37dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
38gb|AC149788.2| Pan troglodytes BAC clone CH251-63L13 from chromo... 38 9.7
39gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643... 38 9.7
40gb|AC079406.23| Homo sapiens 12 BAC RP11-144J4 (Roswell Park Can... 38 9.7
41gb|AC009358.6|AC009358 Human Chromosome 7 clone RP11-191E5, comp... 38 9.7
42gb|AC009178.4|AC009178 Homo sapiens clone RP11-169C22 from 7q31,... 38 9.7
43gb|AF157047.1|AF157047 Nicotiana rustica putative phosphatidylin... 38 9.7
44dbj|AP004613.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
45dbj|AK173938.1| Ciona intestinalis cDNA, clone:cicl005h06, full ... 38 9.7
46dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
47dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
48dbj|AP005698.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
49dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
50dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 38 9.7
51emb|CR388128.18| Zebrafish DNA sequence from clone CH211-127B17 ... 38 9.7
52gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 38 9.7
53dbj|AK113946.1| Ciona intestinalis cDNA, clone:cicl018a19, full ... 38 9.7
54gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
55gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
56gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
57emb|AL845346.4|CNS08CB8 Oryza sativa chromosome 12, . BAC OSJNBa... 38 9.7
58emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb... 38 9.7
59gb|AC124737.5| Mus musculus BAC clone RP23-330K22 from 13, compl... 38 9.7
60emb|AL953840.8| Mouse DNA sequence from clone RP23-152F6 on chro... 38 9.7
61gb|AY067031.1| Schmidtea mediterranea clone HB.24.1a unknown mRN... 38 9.7 
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds
          Length = 3003

 Score =  315 bits (159), Expect = 3e-83
 Identities = 186/195 (95%)
 Strand = Plus / Minus

                                                                        
Query: 1    attcatgcctaattgtcctcaccctatcaacatcatctacaacacaatcatcattttcca 60
            |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2968 attcatgcctcattgtcctcaccctatcaacatcatctacgacacaatcatcattttcca 2909

                                                                        
Query: 61   tcatccactaatccctggcaactaattaccgcacccacccaaaacccaatgaaaagtaac 120
            ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 2908 tcatccactaatccctggcaactaattaccgcaaccacccagaagccaatgaaaagtaac 2849

                                                                        
Query: 121  acaataccccttgcaagacacaaaccgatccatgaccagcggacggacaactaccgaaag 180
            ||||||| |||||| |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 2848 acaatacaccttgcgagacacgaaccgatccatgaccagcggacggacgactaccgaaag 2789

                           
Query: 181  aaggaaacaaagacc 195
            |||||||||||||||
Sbjct: 2788 aaggaaacaaagacc 2774
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    tccatgaccagcggacggaca 169
              |||||||||||||||||||||
Sbjct: 181139 tccatgaccagcggacggaca 181119
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>gb|AF514331.1| Scyllarus arctus 28S ribosomal RNA gene, partial sequence
          Length = 475

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 65  ccactaatccctggcaactaattac 89
           ||||||||||||||||||| |||||
Sbjct: 431 ccactaatccctggcaactgattac 455
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>emb|AJ632310.1| Cotesia congregata virus complete genome, segment Circle7
          Length = 24748

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    catctacaacacaatcatcat 54
             |||||||||||||||||||||
Sbjct: 16213 catctacaacacaatcatcat 16233
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>emb|AL445074.4|CNS07ECX Human chromosome 14 DNA sequence BAC R-313C4 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 144538

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 56   ttccatcatccactaatccctggcaacta 84
            |||||||  ||||||||||||||||||||
Sbjct: 2646 ttccatctcccactaatccctggcaacta 2674
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>gb|DQ205532.1| Adiantum reniforme var. sinense microsatellite Ars31 sequence
          Length = 400

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 130 cttgcaagacacaaaccgatccat 153
           ||||||| ||||||||||||||||
Sbjct: 242 cttgcaaaacacaaaccgatccat 265
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>gb|AC102475.7| Mus musculus chromosome 8, clone RP24-393D2, complete sequence
          Length = 136660

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   aacacaatcatcattttcca 60
            ||||||||||||||||||||
Sbjct: 7357 aacacaatcatcattttcca 7338
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>gb|AC162610.2| Mus musculus chromosome 5, clone RP23-314N3, complete sequence
          Length = 152040

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    acatcatctacaacacaatc 49
             ||||||||||||||||||||
Sbjct: 16644 acatcatctacaacacaatc 16625
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>gb|AC103930.10| Mus musculus chromosome 5, clone RP23-238D18, complete sequence
          Length = 203246

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     acatcatctacaacacaatc 49
              ||||||||||||||||||||
Sbjct: 200745 acatcatctacaacacaatc 200764
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>emb|AL160154.11| Human DNA sequence from clone RP11-447N10 on chromosome 13 Contains a
             CpG island, complete sequence
          Length = 157379

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    atccctggcaactaattacc 90
             ||||||||||||||||||||
Sbjct: 53547 atccctggcaactaattacc 53528
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>emb|BX251412.1| Tropheryma whipplei TW08/27, complete genome; segment 3/3
          Length = 302938

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tcaacatcatctacaacaca 46
             ||||||||||||||||||||
Sbjct: 18127 tcaacatcatctacaacaca 18108
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>emb|AL773511.5| Mouse DNA sequence from clone RP24-66J23 on chromosome 4, complete
             sequence
          Length = 130914

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   acaataccccttgcaagacacaaa 144
             |||||||||||||||| |||||||
Sbjct: 66488 acaataccccttgcaacacacaaa 66511
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>gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome
          Length = 927303

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     tcaacatcatctacaacaca 46
              ||||||||||||||||||||
Sbjct: 254232 tcaacatcatctacaacaca 254251



 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     tcaacatcatctacaacaca 46
              ||||||||||||||||||||
Sbjct: 253289 tcaacatcatctacaacaca 253308
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>gb|AC122011.3| Mus musculus chromosome 10 clone RP24-352E6, complete sequence
          Length = 181468

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 177    aaagaaggaaacaaagacc 195
              |||||||||||||||||||
Sbjct: 155637 aaagaaggaaacaaagacc 155655
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>ref|XM_640461.1| Dictyostelium discoideum hypothetical protein (DDB0216865), partial
            mRNA
          Length = 8106

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 40   caacacaatcatcattttc 58
            |||||||||||||||||||
Sbjct: 3227 caacacaatcatcattttc 3245
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>gb|AC146526.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0027D12 map near 50283S, complete sequence
          Length = 128988

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tacaacacaatcatcattt 56
             |||||||||||||||||||
Sbjct: 31906 tacaacacaatcatcattt 31924
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>gb|AC111016.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_D06,
             complete sequence
          Length = 145323

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    tacaacacaatcatcattt 56
             |||||||||||||||||||
Sbjct: 65107 tacaacacaatcatcattt 65089
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>gb|AC163655.3| Mus musculus BAC clone RP23-264P21 from chromosome 6, complete sequence
          Length = 185583

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    tacaacacaatcatcattt 56
             |||||||||||||||||||
Sbjct: 32251 tacaacacaatcatcattt 32233
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>gb|AC091395.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-288L22, complete
             sequence
          Length = 163323

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    cccaaaacccaatgaaaag 116
             |||||||||||||||||||
Sbjct: 26428 cccaaaacccaatgaaaag 26410
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>gb|AC129336.4| Mus musculus BAC clone RP23-113I7 from chromosome 10, complete sequence
          Length = 215437

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 177   aaagaaggaaacaaagacc 195
             |||||||||||||||||||
Sbjct: 63892 aaagaaggaaacaaagacc 63910
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>gb|AC121876.2| Mus musculus BAC clone RP24-127E16 from 6, complete sequence
          Length = 145395

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 38     tacaacacaatcatcattt 56
              |||||||||||||||||||
Sbjct: 117511 tacaacacaatcatcattt 117493
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>gb|AC145828.1| Pan troglodytes BAC clone RP43-7E4 from 7, complete sequence
          Length = 139712

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 176   gaaagaaggaaacaaagac 194
             |||||||||||||||||||
Sbjct: 48623 gaaagaaggaaacaaagac 48605
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>emb|AL157781.8| Human DNA sequence from clone RP11-115N6 on chromosome 10, complete
             sequence
          Length = 119502

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    tcatctacaacacaatcat 51
             |||||||||||||||||||
Sbjct: 43551 tcatctacaacacaatcat 43533
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>emb|AL136373.21| Human DNA sequence from clone RP11-49P4 on chromosome 1p32.2-33
             Contains two novel genes (FLJ40412, FLJ32011), the MKNK1
             gene for MAP kinase-interacting serine/threonine kinase 1,
             the gene for MOB3C protein (MOB3C) and the 3' end of the
             ATPAF1 gene for ATP synthase mitochondrial F1 complex
             assembly factor 1, complete sequence
          Length = 121112

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 49    catcattttccatcatcca 67
             |||||||||||||||||||
Sbjct: 35836 catcattttccatcatcca 35854
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>gb|AF406623.1| Gibberella acuminata strain BBA71373 28S ribosomal RNA gene and
           intergenic spacer region, partial sequence
          Length = 768

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 91  gcacccacccaaaacccaa 109
           |||||||||||||||||||
Sbjct: 259 gcacccacccaaaacccaa 241
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>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 54     ttttccatcatccactaat 72
              |||||||||||||||||||
Sbjct: 945014 ttttccatcatccactaat 945032
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>emb|BX537319.9| Zebrafish DNA sequence from clone CH211-248N8 in linkage group 17,
             complete sequence
          Length = 48304

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 103   aacccaatgaaaagtaacacaat 125
             ||||||||| |||||||||||||
Sbjct: 29594 aacccaatgcaaagtaacacaat 29572
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>gb|AC092808.2| Homo sapiens chromosome 1 clone RP11-360C2, complete sequence
          Length = 151426

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 42     acacaatcatcattttcca 60
              |||||||||||||||||||
Sbjct: 123489 acacaatcatcattttcca 123507
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>gb|AC073391.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             nbeb0015F09b, complete sequence
          Length = 108964

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tacaacacaatcatcattt 56
             |||||||||||||||||||
Sbjct: 45931 tacaacacaatcatcattt 45949
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>gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete sequence
          Length = 216143

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    acatcatctacaacacaat 48
             |||||||||||||||||||
Sbjct: 76133 acatcatctacaacacaat 76151
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 38       tacaacacaatcatcattt 56
                |||||||||||||||||||
Sbjct: 23539768 tacaacacaatcatcattt 23539786



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 38      tacaacacaatcatcattt 56
               |||||||||||||||||||
Sbjct: 4139449 tacaacacaatcatcattt 4139467
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 38       tacaacacaatcatcattt 56
                |||||||||||||||||||
Sbjct: 14532493 tacaacacaatcatcattt 14532511
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 38       tacaacacaatcatcattt 56
                |||||||||||||||||||
Sbjct: 15462585 tacaacacaatcatcattt 15462603
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 38       tacaacacaatcatcattt 56
                |||||||||||||||||||
Sbjct: 20350395 tacaacacaatcatcattt 20350413
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 38       tacaacacaatcatcattt 56
                |||||||||||||||||||
Sbjct: 22221842 tacaacacaatcatcattt 22221824
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 38       tacaacacaatcatcattt 56
                |||||||||||||||||||
Sbjct: 19024105 tacaacacaatcatcattt 19024087



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 38      tacaacacaatcatcattt 56
               |||||||||||||||||||
Sbjct: 7815320 tacaacacaatcatcattt 7815302
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 38       tacaacacaatcatcattt 56
                |||||||||||||||||||
Sbjct: 16430974 tacaacacaatcatcattt 16430992
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>gb|AC149788.2| Pan troglodytes BAC clone CH251-63L13 from chromosome 7, complete
             sequence
          Length = 171501

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 176   gaaagaaggaaacaaagac 194
             |||||||||||||||||||
Sbjct: 95537 gaaagaaggaaacaaagac 95555
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>gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4,
             complete sequence
          Length = 256879

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    caacacaatcatcattttc 58
             |||||||||||||||||||
Sbjct: 40291 caacacaatcatcattttc 40309
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>gb|AC079406.23| Homo sapiens 12 BAC RP11-144J4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 64191

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    cccaaaacccaatgaaaag 116
             |||||||||||||||||||
Sbjct: 10814 cccaaaacccaatgaaaag 10796
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>gb|AC009358.6|AC009358 Human Chromosome 7 clone RP11-191E5, complete sequence
          Length = 185124

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 176    gaaagaaggaaacaaagac 194
              |||||||||||||||||||
Sbjct: 182970 gaaagaaggaaacaaagac 182952
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>gb|AC009178.4|AC009178 Homo sapiens clone RP11-169C22 from 7q31, complete sequence
          Length = 178097

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 176  gaaagaaggaaacaaagac 194
            |||||||||||||||||||
Sbjct: 9199 gaaagaaggaaacaaagac 9181
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>gb|AF157047.1|AF157047 Nicotiana rustica putative phosphatidylinositol 4-phosphate 5-kinase
            (PIPK1) mRNA, complete cds
          Length = 3222

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 43   cacaatcatcattttccat 61
            |||||||||||||||||||
Sbjct: 1117 cacaatcatcattttccat 1099
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>dbj|AP004613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1123_G09
          Length = 107491

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tacaacacaatcatcattt 56
             |||||||||||||||||||
Sbjct: 38571 tacaacacaatcatcattt 38589
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>dbj|AK173938.1| Ciona intestinalis cDNA, clone:cicl005h06, full insert sequence
          Length = 1670

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 41   aacacaatcatcattttccatca 63
            ||||||||||||||||| |||||
Sbjct: 1566 aacacaatcatcattttacatca 1588
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>dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0052O11
          Length = 106467

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tacaacacaatcatcattt 56
             |||||||||||||||||||
Sbjct: 93006 tacaacacaatcatcattt 93024
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>dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0678G09
          Length = 139220

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tacaacacaatcatcattt 56
             |||||||||||||||||||
Sbjct: 59295 tacaacacaatcatcattt 59313
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>dbj|AP005698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0006L10
          Length = 171115

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    tacaacacaatcatcattt 56
             |||||||||||||||||||
Sbjct: 55683 tacaacacaatcatcattt 55665
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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0047A17
          Length = 149142

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    tacaacacaatcatcattt 56
             |||||||||||||||||||
Sbjct: 29626 tacaacacaatcatcattt 29608
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>dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7
          Length = 74350

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 56    ttccatcatccactaatcc 74
             |||||||||||||||||||
Sbjct: 33447 ttccatcatccactaatcc 33465
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>emb|CR388128.18| Zebrafish DNA sequence from clone CH211-127B17 in linkage group 18,
              complete sequence
          Length = 180022

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 173    accgaaagaaggaaacaaa 191
              |||||||||||||||||||
Sbjct: 149553 accgaaagaaggaaacaaa 149571
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 86      ttaccgcacccacccaaaa 104
               |||||||||||||||||||
Sbjct: 1150807 ttaccgcacccacccaaaa 1150825
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>dbj|AK113946.1| Ciona intestinalis cDNA, clone:cicl018a19, full insert sequence
          Length = 1561

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 41   aacacaatcatcattttccatca 63
            ||||||||||||||||| |||||
Sbjct: 1484 aacacaatcatcattttacatca 1506
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 38       tacaacacaatcatcattt 56
                |||||||||||||||||||
Sbjct: 15470826 tacaacacaatcatcattt 15470844
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 38       tacaacacaatcatcattt 56
                |||||||||||||||||||
Sbjct: 14614494 tacaacacaatcatcattt 14614512
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 38       tacaacacaatcatcattt 56
                |||||||||||||||||||
Sbjct: 23467959 tacaacacaatcatcattt 23467977



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 38      tacaacacaatcatcattt 56
               |||||||||||||||||||
Sbjct: 4139436 tacaacacaatcatcattt 4139454
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>emb|AL845346.4|CNS08CB8 Oryza sativa chromosome 12, . BAC OSJNBa0018E22 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 69273

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tacaacacaatcatcattt 56
             |||||||||||||||||||
Sbjct: 60316 tacaacacaatcatcattt 60334
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>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 123469

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tacaacacaatcatcattt 56
             |||||||||||||||||||
Sbjct: 81845 tacaacacaatcatcattt 81863
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>gb|AC124737.5| Mus musculus BAC clone RP23-330K22 from 13, complete sequence
          Length = 188023

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 176   gaaagaaggaaacaaagac 194
             |||||||||||||||||||
Sbjct: 95253 gaaagaaggaaacaaagac 95235
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>emb|AL953840.8| Mouse DNA sequence from clone RP23-152F6 on chromosome X, complete
              sequence
          Length = 138599

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 34     catctacaacacaatcatc 52
              |||||||||||||||||||
Sbjct: 106117 catctacaacacaatcatc 106135
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>gb|AY067031.1| Schmidtea mediterranea clone HB.24.1a unknown mRNA sequence
          Length = 624

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 38 tacaacacaatcatcattttcca 60
          ||||||||||||| |||||||||
Sbjct: 49 tacaacacaatcaacattttcca 71


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,854,120
Number of Sequences: 3902068
Number of extensions: 1854120
Number of successful extensions: 140053
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139148
Number of HSP's gapped (non-prelim): 905
length of query: 195
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 173
effective length of database: 17,147,199,772
effective search space: 2966465560556
effective search space used: 2966465560556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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