ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4,... 46 0.021
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.021
3emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 46 0.021
4emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 46 0.021
5emb|CR936946.2| Medicago truncatula chromosome 5 clone mth2-77l2... 40 1.3
6gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequ... 40 1.3
7emb|BX927392.9| Zebrafish DNA sequence from clone DKEY-17E11 in ... 38 5.0
8gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome... 38 5.0
9gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 38 5.0
10emb|AL354896.16| Human DNA sequence from clone RP11-512M17 on ch... 38 5.0
11gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 38 5.0
12gb|AC015723.8|AC015723 Homo sapiens chromosome , clone RP11-168G... 38 5.0
13gb|DQ217943.1| Homo sapiens ADAM metallopeptidase with thrombosp... 38 5.0
14gb|AC113491.17| Mus musculus chromosome 19, clone RP23-358H2, co... 38 5.0
15dbj|AB031964.1| Calotes versicolor gene for 12S rRNA, partial se... 38 5.0
16gb|AC108836.23| Mus musculus chromosome 19, clone RP23-276L15, c... 38 5.0

>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10,
              complete sequence
          Length = 150206

 Score = 46.1 bits (23), Expect = 0.021
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 30     tcaatcttgccactgaatcgaccagacatca 60
              ||||||||| || ||||||||||||||||||
Sbjct: 103143 tcaatcttgtcattgaatcgaccagacatca 103173



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.021
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 30       tcaatcttgccactgaatcgaccagacatca 60
                ||||||||| || ||||||||||||||||||
Sbjct: 34649022 tcaatcttgtcattgaatcgaccagacatca 34649052



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>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete
             sequence
          Length = 100836

 Score = 46.1 bits (23), Expect = 0.021
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 30    tcaatcttgccactgaatcgaccagacatca 60
             ||||||||| || ||||||||||||||||||
Sbjct: 55123 tcaatcttgtcattgaatcgaccagacatca 55153



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>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08,
           complete sequence
          Length = 103264

 Score = 46.1 bits (23), Expect = 0.021
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 30  tcaatcttgccactgaatcgaccagacatca 60
           ||||||||| || ||||||||||||||||||
Sbjct: 219 tcaatcttgtcattgaatcgaccagacatca 249



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>emb|CR936946.2| Medicago truncatula chromosome 5 clone mth2-77l22, COMPLETE SEQUENCE
          Length = 115705

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      aaatcaacactcactcactc 28
              ||||||||||||||||||||
Sbjct: 103734 aaatcaacactcactcactc 103753



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>gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequence
          Length = 121626

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 7      tcaaatcaacactcactcactcgt 30
              |||||||||||| |||||||||||
Sbjct: 117379 tcaaatcaacacacactcactcgt 117356



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>emb|BX927392.9| Zebrafish DNA sequence from clone DKEY-17E11 in linkage group 11,
              complete sequence
          Length = 158543

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 64     aagcccaacagcacactaccaca 86
              ||||||||||||||| |||||||
Sbjct: 101489 aagcccaacagcacattaccaca 101511



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>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence
          Length = 214405

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 64     aagcccaacagcacactaccaca 86
              |||||||||||||| ||||||||
Sbjct: 145431 aagcccaacagcaccctaccaca 145453



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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 38      gccactgaatcgaccagac 56
               |||||||||||||||||||
Sbjct: 1784365 gccactgaatcgaccagac 1784347



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>emb|AL354896.16| Human DNA sequence from clone RP11-512M17 on chromosome 13, complete
              sequence
          Length = 209743

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 71     acagcacactaccacaccaaaaa 93
              |||||| ||||||||||||||||
Sbjct: 130011 acagcaaactaccacaccaaaaa 130033



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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 38      gccactgaatcgaccagac 56
               |||||||||||||||||||
Sbjct: 2766153 gccactgaatcgaccagac 2766135



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>gb|AC015723.8|AC015723 Homo sapiens chromosome , clone RP11-168G16, complete sequence
          Length = 163386

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 85     caccaaaaagcaagctgat 103
              |||||||||||||||||||
Sbjct: 127989 caccaaaaagcaagctgat 127971



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>gb|DQ217943.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif 17
             (ADAMTS17) gene, complete cds; and 5S ribosomal RNA gene,
             complete sequence
          Length = 371157

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    caccaaaaagcaagctgat 103
             |||||||||||||||||||
Sbjct: 15868 caccaaaaagcaagctgat 15850



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>gb|AC113491.17| Mus musculus chromosome 19, clone RP23-358H2, complete sequence
          Length = 211604

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    accacaccaaaaagcaagc 99
             |||||||||||||||||||
Sbjct: 14562 accacaccaaaaagcaagc 14544



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>dbj|AB031964.1| Calotes versicolor gene for 12S rRNA, partial sequence
          Length = 351

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 75  cacactaccacaccaaaaa 93
           |||||||||||||||||||
Sbjct: 250 cacactaccacaccaaaaa 268



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>gb|AC108836.23| Mus musculus chromosome 19, clone RP23-276L15, complete sequence
          Length = 196065

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 81    accacaccaaaaagcaagc 99
             |||||||||||||||||||
Sbjct: 29622 accacaccaaaaagcaagc 29640


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 885,556
Number of Sequences: 3902068
Number of extensions: 885556
Number of successful extensions: 83691
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83620
Number of HSP's gapped (non-prelim): 71
length of query: 111
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 90
effective length of database: 17,151,101,840
effective search space: 1543599165600
effective search space used: 1543599165600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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