Clone Name | rbastl40b11 |
---|---|
Clone Library Name | barley_pub |
>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence Length = 150206 Score = 46.1 bits (23), Expect = 0.021 Identities = 29/31 (93%) Strand = Plus / Plus Query: 30 tcaatcttgccactgaatcgaccagacatca 60 ||||||||| || |||||||||||||||||| Sbjct: 103143 tcaatcttgtcattgaatcgaccagacatca 103173
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.021 Identities = 29/31 (93%) Strand = Plus / Plus Query: 30 tcaatcttgccactgaatcgaccagacatca 60 ||||||||| || |||||||||||||||||| Sbjct: 34649022 tcaatcttgtcattgaatcgaccagacatca 34649052
>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence Length = 100836 Score = 46.1 bits (23), Expect = 0.021 Identities = 29/31 (93%) Strand = Plus / Plus Query: 30 tcaatcttgccactgaatcgaccagacatca 60 ||||||||| || |||||||||||||||||| Sbjct: 55123 tcaatcttgtcattgaatcgaccagacatca 55153
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 46.1 bits (23), Expect = 0.021 Identities = 29/31 (93%) Strand = Plus / Plus Query: 30 tcaatcttgccactgaatcgaccagacatca 60 ||||||||| || |||||||||||||||||| Sbjct: 219 tcaatcttgtcattgaatcgaccagacatca 249
>emb|CR936946.2| Medicago truncatula chromosome 5 clone mth2-77l22, COMPLETE SEQUENCE Length = 115705 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 aaatcaacactcactcactc 28 |||||||||||||||||||| Sbjct: 103734 aaatcaacactcactcactc 103753
>gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequence Length = 121626 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 tcaaatcaacactcactcactcgt 30 |||||||||||| ||||||||||| Sbjct: 117379 tcaaatcaacacacactcactcgt 117356
>emb|BX927392.9| Zebrafish DNA sequence from clone DKEY-17E11 in linkage group 11, complete sequence Length = 158543 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 64 aagcccaacagcacactaccaca 86 ||||||||||||||| ||||||| Sbjct: 101489 aagcccaacagcacattaccaca 101511
>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence Length = 214405 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 64 aagcccaacagcacactaccaca 86 |||||||||||||| |||||||| Sbjct: 145431 aagcccaacagcaccctaccaca 145453
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 gccactgaatcgaccagac 56 ||||||||||||||||||| Sbjct: 1784365 gccactgaatcgaccagac 1784347
>emb|AL354896.16| Human DNA sequence from clone RP11-512M17 on chromosome 13, complete sequence Length = 209743 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 71 acagcacactaccacaccaaaaa 93 |||||| |||||||||||||||| Sbjct: 130011 acagcaaactaccacaccaaaaa 130033
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 gccactgaatcgaccagac 56 ||||||||||||||||||| Sbjct: 2766153 gccactgaatcgaccagac 2766135
>gb|AC015723.8|AC015723 Homo sapiens chromosome , clone RP11-168G16, complete sequence Length = 163386 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 caccaaaaagcaagctgat 103 ||||||||||||||||||| Sbjct: 127989 caccaaaaagcaagctgat 127971
>gb|DQ217943.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif 17 (ADAMTS17) gene, complete cds; and 5S ribosomal RNA gene, complete sequence Length = 371157 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 caccaaaaagcaagctgat 103 ||||||||||||||||||| Sbjct: 15868 caccaaaaagcaagctgat 15850
>gb|AC113491.17| Mus musculus chromosome 19, clone RP23-358H2, complete sequence Length = 211604 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 accacaccaaaaagcaagc 99 ||||||||||||||||||| Sbjct: 14562 accacaccaaaaagcaagc 14544
>dbj|AB031964.1| Calotes versicolor gene for 12S rRNA, partial sequence Length = 351 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 75 cacactaccacaccaaaaa 93 ||||||||||||||||||| Sbjct: 250 cacactaccacaccaaaaa 268
>gb|AC108836.23| Mus musculus chromosome 19, clone RP23-276L15, complete sequence Length = 196065 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 accacaccaaaaagcaagc 99 ||||||||||||||||||| Sbjct: 29622 accacaccaaaaagcaagc 29640 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 885,556 Number of Sequences: 3902068 Number of extensions: 885556 Number of successful extensions: 83691 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83620 Number of HSP's gapped (non-prelim): 71 length of query: 111 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 90 effective length of database: 17,151,101,840 effective search space: 1543599165600 effective search space used: 1543599165600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)