Clone Name | rbastl40b07 |
---|---|
Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 72.8 bits (177), Expect = 3e-13 Identities = 39/53 (73%), Positives = 39/53 (73%) Frame = -1 Query: 429 RHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 271 RHKERLDRKVVDVAREVAKMEVPSYRRHL DIPLVSVYFR Sbjct: 999 RHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 72.8 bits (177), Expect = 3e-13 Identities = 39/53 (73%), Positives = 39/53 (73%) Frame = -1 Query: 429 RHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 271 RHKERLDRKVVDVAREVAKMEVPSYRRHL DIPLVSVYFR Sbjct: 999 RHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 63.2 bits (152), Expect = 3e-10 Identities = 32/53 (60%), Positives = 37/53 (69%) Frame = -1 Query: 429 RHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 271 RHK+RL +KVVD+AREVAK++VP YRRHL DIPLVSVYFR Sbjct: 1001 RHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053
>FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 398 Score = 30.8 bits (68), Expect = 1.4 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 360 RAPPSWPPPWQHQLP 404 + PP WPPPW Q+P Sbjct: 112 KGPPDWPPPWGVQMP 126
>SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific protease 2) Length = 984 Score = 30.4 bits (67), Expect = 1.9 Identities = 21/83 (25%), Positives = 36/83 (43%) Frame = +1 Query: 178 QLTVTNATHDLSVDQA*PTTRSCEHR*SASSAEVDRHKRDVDIVVIVILTGHHDVEMTPV 357 +LT++NAT S + S+ E + +DIV I L + E+ + Sbjct: 309 ELTLSNATKSAS---------------AGSTTETVEYSNSIDIVGISSLVEKDENELNTI 353 Query: 358 RGHLHLGHLPGNINYLSVKPFLV 426 + GH GN + +S +P +V Sbjct: 354 EKPILRGHNEGNQSLISAEPIVV 376
>XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD| Length = 311 Score = 29.6 bits (65), Expect = 3.2 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 301 DIVVIVILTGHHDVEMTPVRGHLHLGHL 384 D+ VI L GH D+ T + HLH HL Sbjct: 267 DLRVIQELLGHADISTTQIYTHLHTNHL 294
>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 654 Score = 29.6 bits (65), Expect = 3.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 295 DVDIVVIVILTGHHDVEMTPVRGHLHLG 378 D+DI+ + I GH V + VRG HLG Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHLG 295
>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)| Length = 205 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = -1 Query: 423 KERLDRKVVDVAREVAKMEVPSYRRHL 343 K+RL K+ + +EV+K EVPS+ ++L Sbjct: 156 KDRLGLKLTSLIKEVSKKEVPSHVKNL 182 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,799,501 Number of Sequences: 219361 Number of extensions: 1028296 Number of successful extensions: 2706 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2625 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2706 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)