ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL14_GRIJA (Q7XYA7) 60S ribosomal protein L14 33 0.36
2RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC... 33 0.47
3SIRK_ARATH (O64483) Senescence-induced receptor-like serine/thre... 30 4.0
4GGA1_HUMAN (Q9UJY5) ADP-ribosylation factor-binding protein GGA1... 30 4.0
5L_NDVB (P11205) Large structural protein (Protein L) (Transcript... 29 5.2
6AVT5_YEAST (P38176) Vacuolar amino acid transporter 5 29 5.2
7BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated rec... 29 5.2
81433_TOBAC (Q41246) 14-3-3-like protein 28 8.9

>RL14_GRIJA (Q7XYA7) 60S ribosomal protein L14|
          Length = 133

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = -2

Query: 405 LLLKDILDQR---LDPPTEQLAEEVVFIVRIALACTRVNPESRPAMRSVAQEISAHTQAY 235
           +++ DILDQ    +D P+  L  +V+ + RIAL   +V+  +R A   VA+  S +T A 
Sbjct: 25  VVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSIKVDDIARGA--PVAEVKSKYTAAK 82

Query: 234 LSEAF 220
           + E F
Sbjct: 83  VDETF 87



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>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)|
          Length = 999

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = -2

Query: 399  LKDILDQRLDPPTEQLAEEVVFIVRIALACTRVNPESRPAMRSVA---QEIS 253
            L+ ++D +LD    +  EE+  ++ I L CT   P +RP+MR V    QE+S
Sbjct: 920  LEPVIDPKLDL---KFKEEISKVIHIGLLCTSPLPLNRPSMRKVVIMLQEVS 968



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>SIRK_ARATH (O64483) Senescence-induced receptor-like serine/threonine-protein|
           kinase precursor (FLG22-induced receptor-like kinase 1)
          Length = 876

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
 Frame = -2

Query: 453 DLLTSLPAISSSQEDDLLLKD-------------ILDQRLDPPTEQLAEEVVFIVRIALA 313
           +++T  PAI+SS+ + + + D             I+DQRL    +        +  IALA
Sbjct: 766 EVITGQPAIASSKTEKVHISDHVRSILANGDIRGIVDQRLRERYD--VGSAWKMSEIALA 823

Query: 312 CTRVNPESRPAMRSVAQEI 256
           CT      RP M  V  E+
Sbjct: 824 CTEHTSAQRPTMSQVVMEL 842



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>GGA1_HUMAN (Q9UJY5) ADP-ribosylation factor-binding protein GGA1|
           (Golgi-localized, gamma ear-containing, ARF-binding
           protein 1) (Gamma-adaptin-related protein 1)
          Length = 639

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 444 TSLPAISSSQEDDLLLKDILDQRLDPPTEQLAEE 343
           TSLPA S   + DLL K +L Q L P ++Q+  E
Sbjct: 412 TSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWE 445



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>L_NDVB (P11205) Large structural protein (Protein L) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2204

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -2

Query: 438  LPAISSSQEDDLLLKDILDQRLDPPTEQLAEEVVFIVRIALACTRVNPESRPAMRSVAQE 259
            +  + S  + DLL   +LD  L+    QL   +  +  +  A TR  P+ R    S  ++
Sbjct: 1557 ISGLYSGNKYDLLFPSVLDDNLNEKMLQLISRLCCLYTVLFATTREIPKIRGL--SAEEK 1614

Query: 258  ISAHTQAYLSEAFR 217
             S  T+  LS+A +
Sbjct: 1615 CSVLTEYLLSDAVK 1628



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>AVT5_YEAST (P38176) Vacuolar amino acid transporter 5|
          Length = 509

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 16  LFYQSYRNMLS*CWSLAGKPTHKVLEDLKLYFTELISLQFSPACVD-SESLLKGASLLVV 192
           +FY++  NM       +G   H +  D +LY T +I    SP C   S + L+ AS++ +
Sbjct: 164 IFYRNDDNM-------SGSQEHHMFLDRRLYITLIIVFVISPLCFKRSLNSLRYASMIAI 216

Query: 193 C*FAY 207
              AY
Sbjct: 217 VSVAY 221



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>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 348 EEVVFIVRIALACTRVNPESRPAMRSVAQ 262
           EEV  ++++AL CT+ +P  RP M  V +
Sbjct: 533 EEVEQLIQVALLCTQSSPMERPKMSEVVR 561



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>1433_TOBAC (Q41246) 14-3-3-like protein|
          Length = 251

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 27  ELSQYALLMLVFGRQTDTQST*GFETVFYRINKSAIFTCLCRFRISAQR 173
           EL++YAL + V        ST G  TVFY   K   +  L  F+    R
Sbjct: 93  ELTKYALTLSVIDEHVVPSSTSGESTVFYYKMKGDYYRYLAEFKSGDDR 141


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,692,986
Number of Sequences: 219361
Number of extensions: 1264971
Number of successful extensions: 3095
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3095
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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