ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RNB_BUCAI (P57354) Exoribonuclease 2 (EC 3.1.13.1) (Exoribonucle... 28 4.4
2HXKL_ARATH (Q9T071) Probable hexokinase (EC 2.7.1.1) 28 5.7
3COAT_CVB (P37991) Coat protein (Capsid protein) (CP) 28 7.5
4GR28A_DROME (Q9VM09) Putative gustatory receptor 28a 27 9.8

>RNB_BUCAI (P57354) Exoribonuclease 2 (EC 3.1.13.1) (Exoribonuclease II)|
           (Ribonuclease II) (RNase II)
          Length = 649

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 128 KNGDISTCIHKFCTLNKAKPKFNLEHISD 214
           KNG+IS  I  F    K+K K + +H+SD
Sbjct: 291 KNGNISNKIEFFLAWIKSKSKLSYDHVSD 319



to top

>HXKL_ARATH (Q9T071) Probable hexokinase (EC 2.7.1.1)|
          Length = 493

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 6   IYTPFKIPNTLFWKAHLACH*PITQFSSSLSETITNP 116
           I  P +I  +  W    +CH PIT+F +SL     NP
Sbjct: 273 IREPQEIVVSTEWGDFRSCHLPITEFDASLDAESLNP 309



to top

>COAT_CVB (P37991) Coat protein (Capsid protein) (CP)|
          Length = 315

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 244 GSSPTPPPSTKDRTSVNHRLR 306
           GS+PTPPP    RT+   RLR
Sbjct: 16  GSTPTPPPPPPARTAEEARLR 36



to top

>GR28A_DROME (Q9VM09) Putative gustatory receptor 28a|
          Length = 450

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +3

Query: 78  QFSSSLSETITNPL*TERMETSLHVYINSAH*TKQNRSLISNIFQILAEIHLNVRRFFSY 257
           ++S  L   I+ P+  +R   +  + +N  +  KQ    +SNI  +L +I   +  +F+Y
Sbjct: 239 RYSHRLRNLISTPM--KRYSVTSVIRLNPEYAIKQ----VSNIHNLLCDICQTIEEYFTY 292

Query: 258 P 260
           P
Sbjct: 293 P 293


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,014,413
Number of Sequences: 219361
Number of extensions: 952312
Number of successful extensions: 2204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2204
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top