Clone Name | rbastl40b01 |
---|---|
Clone Library Name | barley_pub |
>gb|AY111343.1| Zea mays CL40259_1 mRNA sequence Length = 804 Score = 65.9 bits (33), Expect = 8e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 287 gcgtcaatcaccgattgcggtggatccaggtccttgtcctg 327 ||||||||||| || |||||||||||||||||||||||||| Sbjct: 510 gcgtcaatcactgactgcggtggatccaggtccttgtcctg 470
>ref|XM_464489.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3009 Score = 48.1 bits (24), Expect = 0.018 Identities = 51/60 (85%) Strand = Plus / Minus Query: 268 tcaacaaaggatagaacgagcgtcaatcaccgattgcggtggatccaggtccttgtcctg 327 |||||| |||||||| || || || | |||||| ||||||||||| |||||| ||||||| Sbjct: 3009 tcaacagaggatagatcgggcatcgaccaccgactgcggtggatcgaggtccctgtcctg 2950
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.018 Identities = 51/60 (85%) Strand = Plus / Plus Query: 268 tcaacaaaggatagaacgagcgtcaatcaccgattgcggtggatccaggtccttgtcctg 327 |||||| |||||||| || || || | |||||| ||||||||||| |||||| ||||||| Sbjct: 5511434 tcaacagaggatagatcgggcatcgaccaccgactgcggtggatcgaggtccctgtcctg 5511493
>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0026H03 Length = 151827 Score = 48.1 bits (24), Expect = 0.018 Identities = 51/60 (85%) Strand = Plus / Plus Query: 268 tcaacaaaggatagaacgagcgtcaatcaccgattgcggtggatccaggtccttgtcctg 327 |||||| |||||||| || || || | |||||| ||||||||||| |||||| ||||||| Sbjct: 56169 tcaacagaggatagatcgggcatcgaccaccgactgcggtggatcgaggtccctgtcctg 56228
>gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, complete sequence Length = 245390 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 cggttcttctcctaccccgccgccctc 269 ||||||||||||| ||||||||||||| Sbjct: 101928 cggttcttctcctcccccgccgccctc 101954
>ref|NM_009551.2| Mus musculus zinc finger, A20 domain containing 2 (Za20d2), mRNA Length = 2835 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 cggttcttctcctaccccgccgccctc 269 ||||||||||||| ||||||||||||| Sbjct: 238 cggttcttctcctcccccgccgccctc 264
>dbj|AK131911.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310021N08 product:zinc finger protein 216, full insert sequence Length = 2559 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 cggttcttctcctaccccgccgccctc 269 ||||||||||||| ||||||||||||| Sbjct: 232 cggttcttctcctcccccgccgccctc 258
>dbj|AK076397.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732491G13 product:zinc finger protein 216, full insert sequence Length = 2835 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 cggttcttctcctaccccgccgccctc 269 ||||||||||||| ||||||||||||| Sbjct: 238 cggttcttctcctcccccgccgccctc 264
>dbj|AK018054.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830475F03 product:zinc finger protein 216, full insert sequence Length = 1589 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 cggttcttctcctaccccgccgccctc 269 ||||||||||||| ||||||||||||| Sbjct: 254 cggttcttctcctcccccgccgccctc 280
>gb|BC080270.1| Mus musculus cDNA clone IMAGE:6816490, containing frame-shift errors Length = 2572 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Plus Query: 243 cggttcttctcctaccccgccgccctc 269 ||||||||||||| ||||||||||||| Sbjct: 219 cggttcttctcctcccccgccgccctc 245
>emb|BX545857.1|CJ17683CPS Campylobacter jejuni Length = 36233 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 5 aatatacactccttttaaaatt 26 |||||||||||||||||||||| Sbjct: 16301 aatatacactccttttaaaatt 16322
>emb|AL139078.2|CJ11168X5 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 5/6 Length = 263335 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 5 aatatacactccttttaaaatt 26 |||||||||||||||||||||| Sbjct: 142353 aatatacactccttttaaaatt 142374
>gb|AC172371.3| Gallus gallus BAC clone CH261-20I24 from chromosome ul, complete sequence Length = 237701 Score = 44.1 bits (22), Expect = 0.28 Identities = 28/30 (93%) Strand = Plus / Minus Query: 226 tccatctgaatgttagacggttcttctcct 255 |||| ||||||||||||| ||||||||||| Sbjct: 184037 tccagctgaatgttagacagttcttctcct 184008
>gb|AY501912.1| Campylobacter jejuni strain TGH 9011 contig013 Tgh012 gene, partial cds Length = 1586 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 atatacactccttttaaaatt 26 ||||||||||||||||||||| Sbjct: 1430 atatacactccttttaaaatt 1410
>gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, complete sequence Length = 219244 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ctaaacaaagcaaaaccgaa 189 |||||||||||||||||||| Sbjct: 193020 ctaaacaaagcaaaaccgaa 193039
>ref|XM_417045.1| PREDICTED: Gallus gallus similar to KIAA0853 protein (LOC418850), mRNA Length = 5480 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 attttcctcttcactttctg 99 |||||||||||||||||||| Sbjct: 656 attttcctcttcactttctg 637
>gb|AC126424.12| Mus musculus chromosome 17, clone RP23-19K10, complete sequence Length = 182696 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 aaagcaaaaccgaagtttaa 195 |||||||||||||||||||| Sbjct: 75743 aaagcaaaaccgaagtttaa 75724
>gb|AC103630.10| Mus musculus chromosome 6, clone RP24-358D8, complete sequence Length = 184937 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aattacacaattttcctctt 90 |||||||||||||||||||| Sbjct: 27874 aattacacaattttcctctt 27855
>gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome 5, complete sequence Length = 144545 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ctaaacaaagcaaaaccgaa 189 |||||||||||||||||||| Sbjct: 43105 ctaaacaaagcaaaaccgaa 43124
>gb|AC165163.2| Mus musculus BAC clone RP23-146B12 from chromosome 14, complete sequence Length = 178254 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 caattacacaattttcctct 89 |||||||||||||||||||| Sbjct: 8334 caattacacaattttcctct 8353
>emb|AL593854.6| Human DNA sequence from clone RP11-423B13 on chromosome 6 Contains the 5' part of a novel gene, complete sequence Length = 166869 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 cttttaaaattccaaataca 35 |||||||||||||||||||| Sbjct: 74586 cttttaaaattccaaataca 74567
>emb|AL590491.13| Human DNA sequence from clone RP11-144A16 on chromosome 9 Contains a pseudogene similar to part of contactin associated protein family, a novel pseudogene, the gene for a novel protein similar to chromosome 9 open reading frame 36 (C9orf36), two novel genes, a 6-pyruvoyltetrahydropterin synthase (PTS) pseudogene and a CpG island, complete sequence Length = 174366 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tccttttaaaattccaaata 33 |||||||||||||||||||| Sbjct: 32420 tccttttaaaattccaaata 32401
>emb|AL355478.16| Human DNA sequence from clone RP11-459J23 on chromosome 13 Contains a novel gene and apseudogene similar to part of splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor) (SFRS1), complete sequence Length = 174736 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 acatatttcagatcttagca 221 |||||||||||||||||||| Sbjct: 166054 acatatttcagatcttagca 166073
>emb|AL162576.27| Human DNA sequence from clone RP11-568F20 on chromosome 13 Contains a ubiquitin pseudogene, complete sequence Length = 105783 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 acatctctacatgtatacataaat 161 |||| ||||||||||||||||||| Sbjct: 57260 acatatctacatgtatacataaat 57283
>emb|X63727.1|MCMDH1A M.crystallinum mRNA for NADP-malate dehydrogenase Length = 1747 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 gccctcaacaaaggatagaacgag 287 ||||||||||||||||| |||||| Sbjct: 554 gccctcaacaaaggatataacgag 531
>emb|BX957222.1| Methanococcus maripaludis S2 complete genome; segment 4/5 Length = 349607 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 taaaattccaaatacactcttttg 43 |||||||||||||||||| ||||| Sbjct: 23183 taaaattccaaatacactgttttg 23206
>emb|AJ720656.1| Gallus gallus mRNA for hypothetical protein, clone 22o22 Length = 4780 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 aaatacactcttttggaaag 48 |||||||||||||||||||| Sbjct: 1382 aaatacactcttttggaaag 1363
>gb|AC113137.2| Homo sapiens chromosome 18, clone RP11-622J9, complete sequence Length = 167694 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tctacatgtatacataaatt 162 |||||||||||||||||||| Sbjct: 119216 tctacatgtatacataaatt 119235
>gb|AC106868.5| Homo sapiens BAC clone RP11-174E22 from 4, complete sequence Length = 136000 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 acaattttcctcttcacttt 96 |||||||||||||||||||| Sbjct: 82848 acaattttcctcttcacttt 82829
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aaaattccaaatacactctt 40 |||||||||||||||||||| Sbjct: 2474215 aaaattccaaatacactctt 2474196
>emb|BX005183.9| Zebrafish DNA sequence from clone CH211-136A14 in linkage group 3, complete sequence Length = 168366 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 taaacaaagcaaaaccgaag 190 |||||||||||||||||||| Sbjct: 120238 taaacaaagcaaaaccgaag 120219
>gb|AC097477.2| Homo sapiens BAC clone RP11-112L18 from 4, complete sequence Length = 59853 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 atggagacatctctacatgtatac 155 |||||||| ||||||||||||||| Sbjct: 16658 atggagacctctctacatgtatac 16681
>gb|AC013277.9| Homo sapiens BAC clone RP11-480N9 from 2, complete sequence Length = 98734 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 cttttaaaattccaaataca 35 |||||||||||||||||||| Sbjct: 65044 cttttaaaattccaaataca 65063
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aaaattccaaatacactctt 40 |||||||||||||||||||| Sbjct: 28636 aaaattccaaatacactctt 28617
>gb|AC167566.1| Mus musculus BAC clone RP24-84B10 from chromosome 14, complete sequence Length = 187792 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 caattacacaattttcctct 89 |||||||||||||||||||| Sbjct: 17099 caattacacaattttcctct 17080
>emb|BX537328.7| Mouse DNA sequence from clone RP23-269E13 on chromosome 4, complete sequence Length = 16634 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ttagcagagatccatctgaa 235 |||||||||||||||||||| Sbjct: 3807 ttagcagagatccatctgaa 3788
>ref|NM_001012891.1| Gallus gallus jumonji domain containing 1A (JMJD1A), mRNA Length = 4780 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 aaatacactcttttggaaag 48 |||||||||||||||||||| Sbjct: 1382 aaatacactcttttggaaag 1363
>emb|BX681417.10| Zebrafish DNA sequence from clone DKEY-161L11 in linkage group 2, complete sequence Length = 233760 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 aaatatacactccttttaaaattc 27 |||||||||| ||||||||||||| Sbjct: 28786 aaatatacacaccttttaaaattc 28809
>gb|AC114594.15| Mus musculus chromosome 1, clone RP23-81J19, complete sequence Length = 144466 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 tttcagatcttagcagagat 226 |||||||||||||||||||| Sbjct: 96112 tttcagatcttagcagagat 96131
>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete sequence Length = 268616 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 aaagcaaaaccgaagtttaa 195 |||||||||||||||||||| Sbjct: 161275 aaagcaaaaccgaagtttaa 161256
>emb|BX005192.7| Human DNA sequence from clone RP11-211N15 on chromosome 9, complete sequence Length = 163795 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tccttttaaaattccaaata 33 |||||||||||||||||||| Sbjct: 21933 tccttttaaaattccaaata 21914 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,690,941 Number of Sequences: 3902068 Number of extensions: 3690941 Number of successful extensions: 95577 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95454 Number of HSP's gapped (non-prelim): 123 length of query: 330 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 308 effective length of database: 17,147,199,772 effective search space: 5281337529776 effective search space used: 5281337529776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)