ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl40a12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 3e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 72 acatgtcttatttctgtttacaagtctgggctatttacaaaatgtaccgta 122 |||||||||||||||||| | ||||||| ||||||||||||||||||||| Sbjct: 37410357 acatgtcttatttctgttcaagagtctggactatttacaaaatgtaccgta 37410407
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 69.9 bits (35), Expect = 3e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 72 acatgtcttatttctgtttacaagtctgggctatttacaaaatgtaccgta 122 |||||||||||||||||| | ||||||| ||||||||||||||||||||| Sbjct: 4894 acatgtcttatttctgttcaagagtctggactatttacaaaatgtaccgta 4944
>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423B08 Length = 151490 Score = 69.9 bits (35), Expect = 3e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 72 acatgtcttatttctgtttacaagtctgggctatttacaaaatgtaccgta 122 |||||||||||||||||| | ||||||| ||||||||||||||||||||| Sbjct: 122391 acatgtcttatttctgttcaagagtctggactatttacaaaatgtaccgta 122441
>gb|AY109928.1| Zea mays CL34324_1 mRNA sequence Length = 1097 Score = 46.1 bits (23), Expect = 0.040 Identities = 32/35 (91%) Strand = Plus / Minus Query: 82 tttctgtttacaagtctgggctatttacaaaatgt 116 |||||||| |||| |||||||||||||||| |||| Sbjct: 1085 tttctgttcacaaatctgggctatttacaacatgt 1051
>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14, complete sequence Length = 185623 Score = 44.1 bits (22), Expect = 0.16 Identities = 25/26 (96%) Strand = Plus / Minus Query: 86 tgtttacaagtctgggctatttacaa 111 ||||||||||||| |||||||||||| Sbjct: 2102 tgtttacaagtcttggctatttacaa 2077
>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01, complete sequence Length = 160142 Score = 44.1 bits (22), Expect = 0.16 Identities = 25/26 (96%) Strand = Plus / Minus Query: 86 tgtttacaagtctgggctatttacaa 111 ||||||||||||| |||||||||||| Sbjct: 41329 tgtttacaagtcttggctatttacaa 41304
>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome Length = 1545895 Score = 44.1 bits (22), Expect = 0.16 Identities = 25/26 (96%) Strand = Plus / Minus Query: 47 gtatgcagatttaacattatttttta 72 ||||||||||||| |||||||||||| Sbjct: 1117557 gtatgcagatttatcattatttttta 1117532
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.16 Identities = 25/26 (96%) Strand = Plus / Minus Query: 86 tgtttacaagtctgggctatttacaa 111 ||||||||||||| |||||||||||| Sbjct: 21448246 tgtttacaagtcttggctatttacaa 21448221
>dbj|AK073901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071K16, full insert sequence Length = 3187 Score = 44.1 bits (22), Expect = 0.16 Identities = 25/26 (96%) Strand = Plus / Minus Query: 86 tgtttacaagtctgggctatttacaa 111 ||||||||||||| |||||||||||| Sbjct: 3162 tgtttacaagtcttggctatttacaa 3137
>gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0069E11, complete sequence Length = 136959 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 tttaacattattttttacatg 76 ||||||||||||||||||||| Sbjct: 128250 tttaacattattttttacatg 128230
>gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062D09, complete sequence Length = 160244 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 tttaacattattttttacatg 76 ||||||||||||||||||||| Sbjct: 150247 tttaacattattttttacatg 150267
>emb|CT025610.7| Mouse DNA sequence from clone RP23-430J15 on chromosome 13, complete sequence Length = 210718 Score = 42.1 bits (21), Expect = 0.63 Identities = 24/25 (96%) Strand = Plus / Minus Query: 45 tggtatgcagatttaacattatttt 69 ||||||||| ||||||||||||||| Sbjct: 192037 tggtatgcaaatttaacattatttt 192013
>emb|AL133402.10| Human DNA sequence from clone RP5-1077H22 on chromosome 6 Contains part of a novel gene, complete sequence Length = 93368 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ataaacagatagataaatggt 23 ||||||||||||||||||||| Sbjct: 78962 ataaacagatagataaatggt 78982
>gb|AC107905.5| Homo sapiens chromosome 15, clone CTD-2026J24, complete sequence Length = 175627 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 catgtcttatttctgtttaca 93 ||||||||||||||||||||| Sbjct: 47088 catgtcttatttctgtttaca 47108
>emb|BX296558.8| Zebrafish DNA sequence from clone CH211-261N20 in linkage group 3, complete sequence Length = 151242 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 tacatgtcttatttctgttta 91 ||||||||||||||||||||| Sbjct: 78822 tacatgtcttatttctgttta 78802
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 tttaacattattttttacatg 76 ||||||||||||||||||||| Sbjct: 8449324 tttaacattattttttacatg 8449304
>gb|AC154224.1| Mus musculus BAC clone RP24-141J15 from chromosome 13, complete sequence Length = 146998 Score = 42.1 bits (21), Expect = 0.63 Identities = 24/25 (96%) Strand = Plus / Plus Query: 45 tggtatgcagatttaacattatttt 69 ||||||||| ||||||||||||||| Sbjct: 100616 tggtatgcaaatttaacattatttt 100640
>gb|AC107766.14| Mus musculus chromosome 1, clone RP23-166L24, complete sequence Length = 182865 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 aaccattgacacacaaacatg 153 ||||||||||||||||||||| Sbjct: 169114 aaccattgacacacaaacatg 169094
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 tttaacattattttttacatg 76 ||||||||||||||||||||| Sbjct: 8520087 tttaacattattttttacatg 8520067
>dbj|AP002340.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2011F17, complete sequence Length = 165747 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 gataaacagatagataaatgg 22 ||||||||||||||||||||| Sbjct: 58899 gataaacagatagataaatgg 58879
>gb|AC155157.1| Medicago truncatula chromosome 2 BAC clone mth2-53f22, complete sequence Length = 129201 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 taacattattttttacatgt 77 |||||||||||||||||||| Sbjct: 11695 taacattattttttacatgt 11714
>gb|AF301237.4| Homo sapiens chromosome 8 clone CTD-2547A9 map q13.3, complete sequence Length = 169842 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tttttacatgtcttatttct 86 |||||||||||||||||||| Sbjct: 56667 tttttacatgtcttatttct 56686
>emb|CR450852.9| Zebrafish DNA sequence from clone DKEY-67C24 in linkage group 12, complete sequence Length = 165449 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 atttaacattattttttaca 74 |||||||||||||||||||| Sbjct: 150256 atttaacattattttttaca 150275
>gb|AC116096.3| Homo sapiens chromosome 3 clone RP11-669C19, complete sequence Length = 164379 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggataaacagatagataaat 20 |||||||||||||||||||| Sbjct: 76011 ggataaacagatagataaat 75992
>gb|AC148590.12| Amia calva clone uoaca-5d5-1, complete sequence Length = 41968 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 attttttacatgtcttattt 84 |||||||||||||||||||| Sbjct: 40155 attttttacatgtcttattt 40174
>gb|AC105082.6| Homo sapiens chromosome 8, clone CTD-2547A9, complete sequence Length = 169845 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tttttacatgtcttatttct 86 |||||||||||||||||||| Sbjct: 56668 tttttacatgtcttatttct 56687
>gb|AC153361.5| Mus musculus BAC clone RP23-291L20 from chromosome 10, complete sequence Length = 212761 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tttacaagtctgggctattt 107 |||||||||||||||||||| Sbjct: 161038 tttacaagtctgggctattt 161019
>gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone mth2-48e18, complete sequence Length = 146321 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 taacattattttttacatgt 77 |||||||||||||||||||| Sbjct: 4326 taacattattttttacatgt 4307
>gb|AC016717.8| Homo sapiens BAC clone RP11-314B1 from 2, complete sequence Length = 210558 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 atacatatagcacacgaaat 181 |||||||||||||||||||| Sbjct: 169613 atacatatagcacacgaaat 169594
>gb|AC016722.9| Homo sapiens BAC clone RP11-333I13 from 2, complete sequence Length = 149995 Score = 40.1 bits (20), Expect = 2.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 63 ttattttttacatgtcttatttctgttt 90 ||||||||||||||||| || ||||||| Sbjct: 56751 ttattttttacatgtctcatgtctgttt 56778
>emb|AL929308.5| Zebrafish DNA sequence from clone CH211-93M8, complete sequence Length = 168467 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 atttaacattattttttaca 74 |||||||||||||||||||| Sbjct: 99187 atttaacattattttttaca 99206
>gb|DQ223162.1| Silurus meridionalis clone HLJCF34 microsatellite sequence Length = 265 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 3 ataaacagatagataaatggtgg 25 ||||| ||||||||||||||||| Sbjct: 233 ataaatagatagataaatggtgg 211
>gb|AC138300.8| Mus musculus chromosome 14, clone RP23-187B20, complete sequence Length = 213955 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 151 atgggactgatatacatat 169 ||||||||||||||||||| Sbjct: 135483 atgggactgatatacatat 135501
>gb|AY644746.1| Geoffroea spinosa clone Gsp.G226 microsatellite sequence Length = 406 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 tctgtttacaagtctgggc 102 ||||||||||||||||||| Sbjct: 317 tctgtttacaagtctgggc 335
>gb|AC155163.4| Mus musculus BAC clone RP24-341A18 from chromosome 8, complete sequence Length = 207406 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 acatgtcttatttctgttt 90 ||||||||||||||||||| Sbjct: 35888 acatgtcttatttctgttt 35870
>gb|AC116697.7| Mus musculus chromosome 3, clone RP24-444C12, complete sequence Length = 183146 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 aacattattttttacatgt 77 ||||||||||||||||||| Sbjct: 15641 aacattattttttacatgt 15623
>gb|AC114459.6| Rattus norvegicus 4 BAC CH230-388N23 (Children's Hospital Oakland Research Institute) complete sequence Length = 190345 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 64 tattttttacatgtcttatttct 86 ||||| ||||||||||||||||| Sbjct: 106844 tatttcttacatgtcttatttct 106866
>gb|AC131335.11| Mus musculus chromosome 8, clone RP23-32D9, complete sequence Length = 190133 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ttttttacatgtcttattt 84 ||||||||||||||||||| Sbjct: 178735 ttttttacatgtcttattt 178717
>gb|AC131107.3| Mus musculus BAC clone RP23-339P15 from chromosome 8, complete sequence Length = 214894 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ttttttacatgtcttattt 84 ||||||||||||||||||| Sbjct: 161401 ttttttacatgtcttattt 161419
>gb|AC147656.3| Pan troglodytes BAC clone CH251-505H4 from Y, complete sequence Length = 238079 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ttttttacatgtcttattt 84 ||||||||||||||||||| Sbjct: 210714 ttttttacatgtcttattt 210732
>gb|AC114411.24| Mus musculus chromosome 5, clone RP23-162F3, complete sequence Length = 208432 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 acagatagataaatggtgg 25 ||||||||||||||||||| Sbjct: 12752 acagatagataaatggtgg 12734
>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence Length = 264062 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 tttaacattattttttaca 74 ||||||||||||||||||| Sbjct: 124528 tttaacattattttttaca 124546
>gb|AC067941.7| Homo sapiens BAC clone RP11-815K3 from 7, complete sequence Length = 215994 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 atgtcttatttctgtttac 92 ||||||||||||||||||| Sbjct: 214977 atgtcttatttctgtttac 214995
>gb|AC002452.1| Homo sapiens BAC clone GS1-310A5 from 7, complete sequence Length = 177112 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 gataaacagatagataaat 20 ||||||||||||||||||| Sbjct: 70616 gataaacagatagataaat 70634
>gb|AC146190.3| Pan troglodytes BAC clone CH251-509K23 from Y, complete sequence Length = 213746 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ttttttacatgtcttattt 84 ||||||||||||||||||| Sbjct: 126369 ttttttacatgtcttattt 126387
>emb|CR392350.11| Zebrafish DNA sequence from clone DKEY-61N21 in linkage group 5, complete sequence Length = 230648 Score = 38.2 bits (19), Expect = 9.8 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Minus Query: 49 atgcagatttaacattattttttacat 75 |||||||||||||| |||||||||||| Sbjct: 96799 atgcagatttaaca-tattttttacat 96774
>gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome 1, complete sequence Length = 236342 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 tttaacattattttttaca 74 ||||||||||||||||||| Sbjct: 101267 tttaacattattttttaca 101285
>gb|AC009902.13| Homo sapiens chromosome 8, clone RP11-363E6, complete sequence Length = 217249 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 ttttacatgtcttatttct 86 ||||||||||||||||||| Sbjct: 102970 ttttacatgtcttatttct 102988
>gb|AC121888.3| Mus musculus BAC clone RP24-142M5 from chromosome 1, complete sequence Length = 158354 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 64 tattttttacatgtcttatttct 86 ||||| ||||||||||||||||| Sbjct: 79921 tatttattacatgtcttatttct 79899
>gb|AC146268.2| Pan troglodytes BAC clone CH251-57I2 from Y, complete sequence Length = 195737 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ttttttacatgtcttattt 84 ||||||||||||||||||| Sbjct: 69189 ttttttacatgtcttattt 69171
>ref|XM_723224.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07434) partial mRNA Length = 834 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 55 atttaacattattttttacatgt 77 ||||| ||||||||||||||||| Sbjct: 328 atttatcattattttttacatgt 306
>ref|XM_719129.1| Plasmodium yoelii yoelii str. 17XNL cGMP phosphodiesterase A4 (PY03988) partial mRNA Length = 1431 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 gatttaacattatttttta 72 ||||||||||||||||||| Sbjct: 1393 gatttaacattatttttta 1411
>gb|AC092785.3| Homo sapiens BAC clone RP11-53M13 from 7, complete sequence Length = 8513 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 atgtcttatttctgtttac 92 ||||||||||||||||||| Sbjct: 7531 atgtcttatttctgtttac 7513
>ref|XM_667751.1| Plasmodium berghei strain ANKA cAMP-specific 3',5'-cyclic phosphodiesterase 4D (PB000520.03.0) partial mRNA Length = 1005 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 gatttaacattatttttta 72 ||||||||||||||||||| Sbjct: 967 gatttaacattatttttta 985
>gb|AC107721.6| Mus musculus chromosome 5, clone RP23-317I8, complete sequence Length = 203227 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 acagatagataaatggtgg 25 ||||||||||||||||||| Sbjct: 130664 acagatagataaatggtgg 130646
>gb|AC111647.10| Rattus norvegicus 4 BAC CH230-103E9 (Children's Hospital Oakland Research Institute) complete sequence Length = 232538 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 64 tattttttacatgtcttatttct 86 ||||| ||||||||||||||||| Sbjct: 222668 tatttcttacatgtcttatttct 222646
>gb|DQ366733.1| Uncultured Prochlorococcus marinus clone HOT0M-10G7 genomic sequence Length = 23045 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 agatttaacattatttttt 71 ||||||||||||||||||| Sbjct: 22800 agatttaacattatttttt 22782
>emb|AL355580.13| Human DNA sequence from clone RP11-76K10 on chromosome 13 Contains the 3' end of a novel gene, complete sequence Length = 179497 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 ttaacattattttttacat 75 ||||||||||||||||||| Sbjct: 56099 ttaacattattttttacat 56117
>emb|AL354720.14| Human DNA sequence from clone RP11-505F3 on chromosome 13 Contains the 3' end of the gene for progesterone-induced blocking factor 1 (PIBF1), a proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 (PSMD10) pseudogene, the KLF5 gene for Kruppel-like factor 5 (intestinal)(CKLF, IKLF, BTEB2), a fatty acid binding protein 5 (psoriasis-associated) (FABP5)(EFABP, E-FABP, PAFABP, PA-FABP) pseudogene and a CpG island, complete sequence Length = 199882 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 gataaacagatagataaat 20 ||||||||||||||||||| Sbjct: 82555 gataaacagatagataaat 82537
>emb|AL096802.11|HSBG13C1 Human DNA sequence from clone GS1-13C1 on chromosome 1q25-31.1 Contains part of a novel gene, complete sequence Length = 75414 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 cattattttttacatgtct 79 ||||||||||||||||||| Sbjct: 52385 cattattttttacatgtct 52367
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gatttaacattatttttta 72 ||||||||||||||||||| Sbjct: 1220139 gatttaacattatttttta 1220121
>emb|CR392013.8| Zebrafish DNA sequence from clone DKEY-170H15 in linkage group 5, complete sequence Length = 187191 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 agatttaacattatttttt 71 ||||||||||||||||||| Sbjct: 62089 agatttaacattatttttt 62071
>emb|CR759948.9| Zebrafish DNA sequence from clone DKEYP-122B2 in linkage group 24, complete sequence Length = 58432 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 taacattattttttacatg 76 ||||||||||||||||||| Sbjct: 51404 taacattattttttacatg 51422
>gb|AC104046.2| Homo sapiens chromosome 15, clone CTD-2262B20, complete sequence Length = 104794 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 attattttttacatgtctt 80 ||||||||||||||||||| Sbjct: 42878 attattttttacatgtctt 42860
>gb|AC073365.14| Homo sapiens 3 BAC RP11-479M14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179598 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 cattattttttacatgtct 79 ||||||||||||||||||| Sbjct: 150524 cattattttttacatgtct 150506
>dbj|BS000662.3| Pan troglodytes chromosome Y clone: PTB-143L19, complete sequence Length = 193499 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ttttttacatgtcttattt 84 ||||||||||||||||||| Sbjct: 82128 ttttttacatgtcttattt 82146
>gb|AC104456.2| Homo sapiens chromosome 1 clone RP5-1014C4, complete sequence Length = 153125 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 tttaacattattttttaca 74 ||||||||||||||||||| Sbjct: 35165 tttaacattattttttaca 35183
>gb|AC182639.3| Pan troglodytes BAC clone CH251-322N11 from chromosome 7, complete sequence Length = 162580 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 atgtcttatttctgtttac 92 ||||||||||||||||||| Sbjct: 113232 atgtcttatttctgtttac 113250
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ttttttacatgtcttattt 84 ||||||||||||||||||| Sbjct: 14070851 ttttttacatgtcttattt 14070869 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ttttttacatgtcttattt 84 ||||||||||||||||||| Sbjct: 13637065 ttttttacatgtcttattt 13637047
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gatttaacattatttttta 72 ||||||||||||||||||| Sbjct: 1267993 gatttaacattatttttta 1267975
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gatttaacattatttttta 72 ||||||||||||||||||| Sbjct: 1231249 gatttaacattatttttta 1231231
>ref|XM_688171.1| PREDICTED: Danio rerio similar to mKIAA1138 protein (LOC564848), mRNA Length = 3594 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 ccattgacacacaaacatg 153 ||||||||||||||||||| Sbjct: 2654 ccattgacacacaaacatg 2672
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gatttaacattatttttta 72 ||||||||||||||||||| Sbjct: 1127483 gatttaacattatttttta 1127465
>dbj|AK040715.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530019I06 product:hypothetical protein, full insert sequence Length = 982 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 acatgtcttatttctgttt 90 ||||||||||||||||||| Sbjct: 982 acatgtcttatttctgttt 964
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gatttaacattatttttta 72 ||||||||||||||||||| Sbjct: 1207429 gatttaacattatttttta 1207411
>dbj|AK047739.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length enriched library, clone:C030020B06 product:unclassifiable, full insert sequence Length = 1820 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 attattttttacatgtctt 80 ||||||||||||||||||| Sbjct: 371 attattttttacatgtctt 389
>emb|BX897689.5| Zebrafish DNA sequence from clone DKEY-40N8, complete sequence Length = 216629 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 agatttaacattatttttt 71 ||||||||||||||||||| Sbjct: 7057 agatttaacattatttttt 7075
>gb|AF260011.2|AF260011 Homo sapiens chromosome 21 clone PAC H08866 map 21q22.1, complete sequence Length = 113729 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 ggataaacagatagataaa 19 ||||||||||||||||||| Sbjct: 59100 ggataaacagatagataaa 59118
>gb|AC084048.5| Homo sapiens BAC clone RP11-61G19 from 4, complete sequence Length = 131584 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 92 caagtctgggctatttacaaaat 114 ||||||||||| ||||||||||| Sbjct: 129543 caagtctgggcaatttacaaaat 129565
>gb|AC133183.3| Mus musculus BAC clone RP24-185O19 from chromosome 12, complete sequence Length = 182948 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 68 ttttacatgtcttatttctgttt 90 ||||| ||||||||||||||||| Sbjct: 155070 ttttatatgtcttatttctgttt 155092
>gb|AC068544.7| Homo sapiens BAC clone RP11-369J9 from 2, complete sequence Length = 159397 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 atttaacattattttttac 73 ||||||||||||||||||| Sbjct: 76999 atttaacattattttttac 77017
>gb|AC027138.10| Staphylococcus aureus clone sabac-9, complete sequence Length = 46239 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gatttaacattatttttta 72 ||||||||||||||||||| Sbjct: 32843 gatttaacattatttttta 32825
>gb|AC079248.5| Homo sapiens BAC clone RP11-24J11 from 2, complete sequence Length = 128535 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 ttaacattattttttacat 75 ||||||||||||||||||| Sbjct: 116664 ttaacattattttttacat 116682
>gb|AC015445.3|F2J10 Sequence of BAC F2J10 from Arabidopsis thaliana chromosome 1, complete sequence Length = 91720 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 gataaacagatagataaat 20 ||||||||||||||||||| Sbjct: 34766 gataaacagatagataaat 34748
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gatttaacattatttttta 72 ||||||||||||||||||| Sbjct: 1191466 gatttaacattatttttta 1191448
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gatttaacattatttttta 72 ||||||||||||||||||| Sbjct: 1191664 gatttaacattatttttta 1191646
>emb|AL163248.2|HS21C048 Homo sapiens chromosome 21 segment HS21C048 Length = 340000 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 ggataaacagatagataaa 19 ||||||||||||||||||| Sbjct: 294940 ggataaacagatagataaa 294958
>emb|CR786562.6| Zebrafish DNA sequence from clone CH211-244H7 in linkage group 18, complete sequence Length = 144824 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 gataaacagatagataaat 20 ||||||||||||||||||| Sbjct: 31294 gataaacagatagataaat 31312
>emb|BX649256.12| Zebrafish DNA sequence from clone DKEYP-92A5 in linkage group 22, complete sequence Length = 128446 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 134 accattgacacacaaacat 152 ||||||||||||||||||| Sbjct: 28209 accattgacacacaaacat 28191
>emb|BX927076.9| Zebrafish DNA sequence from clone CH211-241L24 in linkage group 18, complete sequence Length = 152951 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 gataaacagatagataaat 20 ||||||||||||||||||| Sbjct: 111259 gataaacagatagataaat 111241
>emb|AL772158.6| Zebrafish DNA sequence from clone CH211-128N21 in linkage group 22, complete sequence Length = 178046 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 134 accattgacacacaaacat 152 ||||||||||||||||||| Sbjct: 170615 accattgacacacaaacat 170633
>emb|AL096869.8|CNS00YVH Human chromosome 14 DNA sequence BAC R-1078H9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 228097 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 ttttacatgtcttatttct 86 ||||||||||||||||||| Sbjct: 942 ttttacatgtcttatttct 924
>emb|CR855804.2| Xenopus tropicalis finished cDNA, clone TTpA006m17 Length = 2657 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 gggctatttacaaaatgta 117 ||||||||||||||||||| Sbjct: 1941 gggctatttacaaaatgta 1959
>emb|AL163872.2|CNS05TBN Human chromosome 14 DNA sequence BAC R-76E12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168486 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 62 attattttttacatgtcttattt 84 ||||||||||| ||||||||||| Sbjct: 67428 attattttttaaatgtcttattt 67406
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gatttaacattatttttta 72 ||||||||||||||||||| Sbjct: 1233635 gatttaacattatttttta 1233617
>gb|AC108404.8| Mus musculus chromosome 18, clone RP24-491I16, complete sequence Length = 196638 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 138 ttgacacacaaacatgggactga 160 |||||||||||||||||| |||| Sbjct: 44453 ttgacacacaaacatggggctga 44431
>gb|AC101682.8| Mus musculus chromosome 18, clone RP23-183C23, complete sequence Length = 227840 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 138 ttgacacacaaacatgggactga 160 |||||||||||||||||| |||| Sbjct: 101889 ttgacacacaaacatggggctga 101911
>gb|AC116406.13| Mus musculus chromosome 3, clone RP23-427K12, complete sequence Length = 175075 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 gataaacagatagataaatggtg 24 |||| |||||||||||||||||| Sbjct: 65504 gatacacagatagataaatggtg 65482
>emb|AL954311.13| Zebrafish DNA sequence from clone CH211-138M12 in linkage group 5, complete sequence Length = 168421 Score = 38.2 bits (19), Expect = 9.8 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 49 atgcagatttaacattattttttacat 75 |||||||||||||| |||||||||||| Sbjct: 140626 atgcagatttaaca-tattttttacat 140651
>gb|AC114627.8| Mus musculus chromosome 3, clone RP24-108F9, complete sequence Length = 152152 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 aacattattttttacatgt 77 ||||||||||||||||||| Sbjct: 21603 aacattattttttacatgt 21621
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gatttaacattatttttta 72 ||||||||||||||||||| Sbjct: 1159267 gatttaacattatttttta 1159249
>emb|AL355098.3|CNS05TCH Human chromosome 14 DNA sequence BAC R-241E13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 153094 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 62 attattttttacatgtcttattt 84 ||||||||||| ||||||||||| Sbjct: 132314 attattttttaaatgtcttattt 132292
>emb|AL139193.4|CNS01DXA Human chromosome 14 DNA sequence BAC R-661G16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162691 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 ttttacatgtcttatttct 86 ||||||||||||||||||| Sbjct: 89666 ttttacatgtcttatttct 89684
>gb|AC145556.4| Mus musculus BAC clone RP23-308E7 from chromosome 8, complete sequence Length = 178400 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 acatgtcttatttctgttt 90 ||||||||||||||||||| Sbjct: 161594 acatgtcttatttctgttt 161576
>dbj|AP001939.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2231G18, complete sequence Length = 147114 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 tatttctgtttacaagtct 98 ||||||||||||||||||| Sbjct: 67153 tatttctgtttacaagtct 67135
>dbj|AP003113.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1747F8 Length = 161402 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 55 atttaacattattttttacatgt 77 |||||||||||||||||| |||| Sbjct: 76524 atttaacattattttttaaatgt 76502
>emb|AL646049.14| Mouse DNA sequence from clone RP23-63A9 on chromosome X, complete sequence Length = 146105 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 attattttttacatgtctt 80 ||||||||||||||||||| Sbjct: 68554 attattttttacatgtctt 68572 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,950,045 Number of Sequences: 3902068 Number of extensions: 2950045 Number of successful extensions: 191448 Number of sequences better than 10.0: 107 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 190434 Number of HSP's gapped (non-prelim): 1016 length of query: 198 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 176 effective length of database: 17,147,199,772 effective search space: 3017907159872 effective search space used: 3017907159872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
