>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)|
           (Beta-COP) (Fragment)
          Length = 400

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 22/30 (73%), Positives = 27/30 (90%)
 Frame = -1

Query: 451 IEKQVDGKLSGYIRIRSKTQGIALSLGDKI 362
           IEKQ DGK+SGYIRIR+K Q IA++LG+KI
Sbjct: 364 IEKQADGKISGYIRIRAKVQSIAVTLGEKI 393

>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 964

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 25/39 (64%), Positives = 32/39 (82%), Gaps = 3/39 (7%)
 Frame = -1

Query: 454  SIEKQVD---GKLSGYIRIRSKTQGIALSLGDKITLKQK 347
            SIEK VD    K++G+IRIR+K+QG+ALSLGDKI+  QK
Sbjct: 920  SIEKPVDDPDSKVTGHIRIRAKSQGMALSLGDKISSSQK 958

>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 25/40 (62%), Positives = 31/40 (77%), Gaps = 4/40 (10%)
 Frame = -1

Query: 454  SIEKQV----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 347
            SIEK V    D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct: 910  SIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 25/40 (62%), Positives = 31/40 (77%), Gaps = 4/40 (10%)
 Frame = -1

Query: 454  SIEKQV----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 347
            SIEK V    D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct: 910  SIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 940

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = -1

Query: 454 SIEKQVDGKLSGYIRIRSKTQGIALSLG 371
           S+EK V G +SG++RIRSKTQGIALSLG
Sbjct: 910 SVEKSVSGPISGHVRIRSKTQGIALSLG 937

>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = -1

Query: 436  DGKLSGYIRIRSKTQGIALSLGDKITLKQK 347
            D  ++ +IRIR+K+QG+ALSLGDKI L QK
Sbjct: 920  DAAVTVHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 973

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = -1

Query: 421  GYIRIRSKTQGIALSLGDKITLKQK 347
            GY+RIRSK QG+ALSLGD++ L  K
Sbjct: 939  GYVRIRSKGQGLALSLGDRVALIAK 963

>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +1

Query: 4   KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGVGRDHCISRGH 156
           +  R+   PE ++L      TPTQ    F +HR+ +K+A + KG      +  GH
Sbjct: 565 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGH 619

>ERG6_PNECA (Q96WX4) Sterol 24-C-methyltransferase (EC 2.1.1.41)|
           (Delta(24)-sterol C-methyltransferase)
          Length = 377

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -2

Query: 309 CHVGGPLCQ---FHTTGTVG**RCSYNVQKIKERDEKRKIARK 190
           C VGGP CQ   F     VG     Y +Q+ K   EK+ ++ K
Sbjct: 135 CGVGGPACQISVFTGANIVGLNNNDYQIQRAKYYSEKKGLSDK 177

>HNK2_XENLA (P42587) Homeobox protein XENK-2|
          Length = 196

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 4   KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGV 126
           +  R+   PE ++L      TPTQ    F +HR+  K+A S KG+
Sbjct: 89  RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARSEKGM 133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,037,410
Number of Sequences: 219361
Number of extensions: 1090663
Number of successful extensions: 2839
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2839
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)