ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 182 7e-43
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 182 7e-43
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 182 7e-43
4dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic D... 182 7e-43
5dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 182 7e-43
6gb|AY103740.1| Zea mays PCO120652 mRNA sequence 167 4e-38
7gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence 127 3e-26
8gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
9gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
11dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
12dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
13dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
14dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
16gb|AY109245.1| Zea mays PCO147899 mRNA sequence 101 2e-18
17ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490... 50 0.006
18emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BA... 50 0.006
19emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, ... 50 0.006
20ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480... 44 0.39
21gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomi... 44 0.39
22dbj|AK221668.1| Arabidopsis thaliana mRNA for putative protein, ... 44 0.39
23gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 1... 42 1.5
24gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cance... 42 1.5
25gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence 42 1.5
26gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, co... 42 1.5
27gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, comple... 42 1.5
28gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, co... 42 1.5
29gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, co... 42 1.5
30gb|AC108767.10| Mus musculus chromosome 3, clone RP24-377E5, com... 40 6.1
31gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, compl... 40 6.1
32gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome... 40 6.1
33ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM033... 40 6.1
34emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chr... 40 6.1
35emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 i... 40 6.1
36gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, com... 40 6.1
37gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, compl... 40 6.1
38gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, compl... 40 6.1
39ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA 40 6.1
40gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone... 40 6.1
41gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete... 40 6.1
42gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, comple... 40 6.1
43gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete ... 40 6.1
44dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 6.1
45dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:C... 40 6.1
46dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 6.1 
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  182 bits (92), Expect = 7e-43
 Identities = 113/120 (94%)
 Strand = Plus / Minus

                                                                        
Query: 335  ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 394
            ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 3111 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 3052

                                                                        
Query: 395  ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 454
            ||||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||
Sbjct: 3051 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 2992
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  182 bits (92), Expect = 7e-43
 Identities = 113/120 (94%)
 Strand = Plus / Plus

                                                                            
Query: 335      ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 394
                ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 10020837 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 10020896

                                                                            
Query: 395      ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 454
                ||||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||
Sbjct: 10020897 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 10020956
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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  182 bits (92), Expect = 7e-43
 Identities = 113/120 (94%)
 Strand = Plus / Plus

                                                                          
Query: 335    ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 394
              ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 101119 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 101178

                                                                          
Query: 395    ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 454
              ||||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||
Sbjct: 101179 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 101238
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>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0021A04
          Length = 50487

 Score =  182 bits (92), Expect = 7e-43
 Identities = 113/120 (94%)
 Strand = Plus / Plus

                                                                         
Query: 335   ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 394
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 48394 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 48453

                                                                         
Query: 395   ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 454
             ||||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||
Sbjct: 48454 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 48513
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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  182 bits (92), Expect = 7e-43
 Identities = 113/120 (94%)
 Strand = Plus / Plus

                                                                          
Query: 335    ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 394
              ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 115330 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 115389

                                                                          
Query: 395    ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 454
              ||||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||
Sbjct: 115390 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 115449
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>gb|AY103740.1| Zea mays PCO120652 mRNA sequence
          Length = 1013

 Score =  167 bits (84), Expect = 4e-38
 Identities = 111/120 (92%)
 Strand = Plus / Minus

                                                                       
Query: 335 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 394
           ||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct: 631 ttaactgccacccttctgcttgagagtaatcttgtcacctaagctgagtgcaattccctg 572

                                                                       
Query: 395 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 454
           ||||||||||||||||| ||||||||| |||||||||||||||  |||||||||||||||
Sbjct: 571 ggtcttgctccttattcggatgtaaccactgagcttgccatcatgttgcttctcaatgct 512
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>gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence
          Length = 1032

 Score =  127 bits (64), Expect = 3e-26
 Identities = 106/120 (88%)
 Strand = Plus / Minus

                                                                       
Query: 335 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 394
           ||||||||| || ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 638 ttaactgccacctttctgcttgagagtgatcttgtcccctaagctgagtgcaattccctg 579

                                                                       
Query: 395 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 454
           |||||||||||||||||  ||||| || ||||||||||| |||  |||||||||||||||
Sbjct: 578 ggtcttgctccttattcgaatgtagccactgagcttgccgtcatgttgcttctcaatgct 519
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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Plus

                                                                         
Query: 339   ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 398
             |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 16550 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 16609

                                                                 
Query: 399   ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaa 450
             || |||| ||||||||| || || || |||||||||||  ||||||| ||||
Sbjct: 16610 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaa 16661
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>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Plus

                                                                          
Query: 339    ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 398
              |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 166015 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 166074

                                                                  
Query: 399    ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaa 450
              || |||| ||||||||| || || || |||||||||||  ||||||| ||||
Sbjct: 166075 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaa 166126
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Plus

                                                                           
Query: 339     ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 398
               |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 3648878 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3648937

                                                                   
Query: 399     ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaa 450
               || |||| ||||||||| || || || |||||||||||  ||||||| ||||
Sbjct: 3648938 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaa 3648989
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>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
            insert sequence
          Length = 3332

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                        
Query: 339  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 398
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909

                                                                
Query: 399  ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaa 450
            || |||| ||||||||| || || || |||||||||||  ||||||| ||||
Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaa 2857
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>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
            insert sequence
          Length = 3332

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                        
Query: 339  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 398
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909

                                                                
Query: 399  ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaa 450
            || |||| ||||||||| || || || |||||||||||  ||||||| ||||
Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaa 2857
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>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
            insert sequence
          Length = 3363

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                        
Query: 339  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 398
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 2999 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2940

                                                                
Query: 399  ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaa 450
            || |||| ||||||||| || || || |||||||||||  ||||||| ||||
Sbjct: 2939 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaa 2888
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>dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F11, full
            insert sequence
          Length = 1741

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                        
Query: 339  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 398
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 1377 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 1318

                                                                
Query: 399  ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaa 450
            || |||| ||||||||| || || || |||||||||||  ||||||| ||||
Sbjct: 1317 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaa 1266
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Plus

                                                                           
Query: 339     ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 398
               |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 3657572 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3657631

                                                                   
Query: 399     ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaa 450
               || |||| ||||||||| || || || |||||||||||  ||||||| ||||
Sbjct: 3657632 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaa 3657683
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>gb|AY109245.1| Zea mays PCO147899 mRNA sequence
          Length = 751

 Score =  101 bits (51), Expect = 2e-18
 Identities = 72/79 (91%)
 Strand = Plus / Minus

                                                                       
Query: 340 tgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtct 399
           ||||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 711 tgcctcccttctgttttagggtgatcttgtctcctaagctgagcgcaattccttgggtct 652

                              
Query: 400 tgctccttattctgatgta 418
           |||| ||||| ||||||||
Sbjct: 651 tgcttcttatcctgatgta 633
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>ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490 mRNA, complete cds
          Length = 3306

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 345  cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 404
            ||||| || |||||||| || |||||||| |  || || ||||| ||||| |||||||||
Sbjct: 2955 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 2896

                             
Query: 405  cttattctgatgtaacc 421
            ||||| || ||||||||
Sbjct: 2895 cttatccttatgtaacc 2879
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>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project)
          Length = 94319

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                         
Query: 345   cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 404
             ||||| || |||||||| || |||||||| |  || || ||||| ||||| |||||||||
Sbjct: 50562 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 50503

                              
Query: 405   cttattctgatgtaacc 421
             ||||| || ||||||||
Sbjct: 50502 cttatccttatgtaacc 50486



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 384   gcaattccttgggtcttgctccttattctgatgtaacc 421
             ||||| ||||| |||||||||||||| || ||||||||
Sbjct: 45214 gcaatcccttgcgtcttgctccttatccttatgtaacc 45177
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>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75
          Length = 196242

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                         
Query: 345   cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 404
             ||||| || |||||||| || |||||||| |  || || ||||| ||||| |||||||||
Sbjct: 38627 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 38568

                              
Query: 405   cttattctgatgtaacc 421
             ||||| || ||||||||
Sbjct: 38567 cttatccttatgtaacc 38551



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 384   gcaattccttgggtcttgctccttattctgatgtaacc 421
             ||||| ||||| |||||||||||||| || ||||||||
Sbjct: 33279 gcaatcccttgcgtcttgctccttatccttatgtaacc 33242
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>ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480 mRNA, complete cds
          Length = 3296

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 384  gcaattccttgggtcttgctccttattctgatgtaacc 421
            ||||| ||||| |||||||||||||| || ||||||||
Sbjct: 2867 gcaatcccttgcgtcttgctccttatccttatgtaacc 2830
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>gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomic sequence, complete
             sequence
          Length = 91755

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 300   ctacatgacacaattgcaacagattg 325
             |||||||| |||||||||||||||||
Sbjct: 20673 ctacatgagacaattgcaacagattg 20648
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>dbj|AK221668.1| Arabidopsis thaliana mRNA for putative protein, complete cds,
           clone: RAFL09-97-P16
          Length = 1212

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 384 gcaattccttgggtcttgctccttattctgatgtaacc 421
           ||||| ||||| |||||||||||||| || ||||||||
Sbjct: 822 gcaatcccttgcgtcttgctccttatccttatgtaacc 785
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>gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 129 of 218 of the
            complete genome
          Length = 11901

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 89   gttttttgtcaaaaaaggcct 109
            |||||||||||||||||||||
Sbjct: 4932 gttttttgtcaaaaaaggcct 4912
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>gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 51315

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 207   tcttctcatccctctctttaa 227
             |||||||||||||||||||||
Sbjct: 29023 tcttctcatccctctctttaa 29043
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>gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence
          Length = 39112

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 30   cgaaatacagtatctcaatcc 50
            |||||||||||||||||||||
Sbjct: 5828 cgaaatacagtatctcaatcc 5808
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>gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, complete sequence
          Length = 101116

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 201   tcttcctcttctcatccctct 221
             |||||||||||||||||||||
Sbjct: 82774 tcttcctcttctcatccctct 82794
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>gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, complete sequence
          Length = 169579

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 205   cctcttctcatccctctcttt 225
             |||||||||||||||||||||
Sbjct: 41686 cctcttctcatccctctcttt 41706
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>gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, complete sequence
          Length = 170801

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 201  tcttcctcttctcatccctct 221
            |||||||||||||||||||||
Sbjct: 7996 tcttcctcttctcatccctct 8016
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>gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, complete sequence
          Length = 204424

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 304   atgacacaattgcaacagatt 324
             |||||||||||||||||||||
Sbjct: 73824 atgacacaattgcaacagatt 73844
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>gb|AC108767.10| Mus musculus chromosome 3, clone RP24-377E5, complete sequence
          Length = 167878

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   agaacatctttactagccca 263
             ||||||||||||||||||||
Sbjct: 74214 agaacatctttactagccca 74233
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>gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, complete cds
          Length = 987

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 atggaagggagttgggagag 133
           ||||||||||||||||||||
Sbjct: 98  atggaagggagttgggagag 117
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>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence
          Length = 209579

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tcttcctcttctcatccctc 220
             ||||||||||||||||||||
Sbjct: 64584 tcttcctcttctcatccctc 64565
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>ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM03361.1) partial mRNA
          Length = 2949

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 360  gtaatcttgtctcccaagctgagtgcaattccttgggtcttgct 403
            |||||||||||||||||||| |  || || || |||||||||||
Sbjct: 2918 gtaatcttgtctcccaagctcaaggcgatcccctgggtcttgct 2875
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>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains
            the RPL21P2 gene for ribosomal protein L21 pseudogene 2
            and a novel gene, complete sequence
          Length = 72540

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 367  tgtctcccaagctgagtgca 386
            ||||||||||||||||||||
Sbjct: 6689 tgtctcccaagctgagtgca 6670
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>emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 in linkage group 10,
            complete sequence
          Length = 167771

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 114  atggaagggagttgggagag 133
            ||||||||||||||||||||
Sbjct: 2324 atggaagggagttgggagag 2343
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>gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, complete sequence
          Length = 170255

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   cttgccatcaacttgcttct 447
             ||||||||||||||||||||
Sbjct: 75604 cttgccatcaacttgcttct 75623
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>gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, complete sequence
          Length = 194729

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     tcacatctattcttacacca 86
              ||||||||||||||||||||
Sbjct: 114772 tcacatctattcttacacca 114791
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>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence
          Length = 168843

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   cccttctgcttgagggtaat 364
             ||||||||||||||||||||
Sbjct: 29210 cccttctgcttgagggtaat 29229
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>ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA
          Length = 987

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 atggaagggagttgggagag 133
           ||||||||||||||||||||
Sbjct: 98  atggaagggagttgggagag 117
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>gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone MGC:110381
           IMAGE:7410517), complete cds
          Length = 968

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 atggaagggagttgggagag 133
           ||||||||||||||||||||
Sbjct: 81  atggaagggagttgggagag 100
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>gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete sequence
          Length = 164051

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    tcttcctcttctcatccctc 220
              ||||||||||||||||||||
Sbjct: 129969 tcttcctcttctcatccctc 129950
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>gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, complete sequence
          Length = 110512

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    acaaacttcacatctattct 79
             ||||||||||||||||||||
Sbjct: 22462 acaaacttcacatctattct 22481
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>gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete sequence
          Length = 89352

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   ctcccttctgcttgagggta 362
             ||||||||||||||||||||
Sbjct: 72452 ctcccttctgcttgagggta 72433
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>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete sequence
          Length = 185588

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    cccttctgcttgagggtaat 364
              ||||||||||||||||||||
Sbjct: 134566 cccttctgcttgagggtaat 134585
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>dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:CTB-271B20, complete
             sequence
          Length = 129610

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   tgtctcccaagctgagtgca 386
             ||||||||||||||||||||
Sbjct: 44905 tgtctcccaagctgagtgca 44886
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>dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene
           region, section 8/19, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 345 cccttctgcttgagggtaat 364
           ||||||||||||||||||||
Sbjct: 911 cccttctgcttgagggtaat 892


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,176,660
Number of Sequences: 3902068
Number of extensions: 4176660
Number of successful extensions: 78560
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78409
Number of HSP's gapped (non-prelim): 151
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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