ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NU2M_NEUCR (Q35140) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 29 3.9
2K6PF2_SYNY3 (Q55988) 6-phosphofructokinase 2 (EC 2.7.1.11) (Phos... 29 5.1
3YGB5_YEAST (P33199) Hypothetical 15.0 kDa protein in PDR6-PDR1 i... 28 6.7
4ZNF73_HUMAN (O43830) Zinc finger protein 73 (Zinc finger protein... 28 8.8

>NU2M_NEUCR (Q35140) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 583

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 414 IFVLFCFIAAIVLYVTPLQVLAALGGFYAMRHPRFRHRLP 295
           +F +F F+ +I+  +  L     +  FY MRHPRF ++ P
Sbjct: 66  VFQIFIFLISIL--ILQLTSFDPIKKFYIMRHPRFINKWP 103



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>K6PF2_SYNY3 (Q55988) 6-phosphofructokinase 2 (EC 2.7.1.11) (Phosphofructokinase|
           2) (Phosphohexokinase 2)
          Length = 384

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -2

Query: 280 LLQAFASEGGQYAVKMLLSGGL-IVVIPRITPCLSL*L---AVLLFVTVRRSGLMSLSIV 113
           ++Q    + G   +   ++GG  I++IP ITPCL+  +        + +R+SG     IV
Sbjct: 184 IVQVMGRDAGHLTLHAGIAGGADIILIPEITPCLTSEIIRNCCYQLMNLRKSGRHFALIV 243

Query: 112 LDAG 101
           +  G
Sbjct: 244 ISEG 247



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>YGB5_YEAST (P33199) Hypothetical 15.0 kDa protein in PDR6-PDR1 intergenic|
           region
          Length = 130

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 33  DISSTCFQNLASHDKLSAHYFLDPASNTI 119
           D+ S CF N    D LS + FL P S+ +
Sbjct: 72  DVDSLCFSNCFQPDALSGNVFLPPRSSNM 100



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>ZNF73_HUMAN (O43830) Zinc finger protein 73 (Zinc finger protein 186) (hZNF2)|
          Length = 326

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 1   SQAGYLTLHNKIFHQHASKTWQVMISCQHIISWIQHLTR*T 123
           SQ  YLT+H      H + TWQ   +C H      H ++ T
Sbjct: 183 SQKSYLTIH------HRTHTWQKPYACDHCEKAFSHKSKLT 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,484,711
Number of Sequences: 219361
Number of extensions: 1231050
Number of successful extensions: 2946
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2946
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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