Clone Name | rbastl40a09 |
---|---|
Clone Library Name | barley_pub |
>gb|AY107337.1| Zea mays PCO064147 mRNA sequence Length = 1264 Score = 121 bits (61), Expect = 2e-24 Identities = 145/173 (83%) Strand = Plus / Minus Query: 197 tctagggattacaacgataaggccaccagatagtagcatcttcacagcatactgtccgcc 256 ||||||||||||||||||||| ||||||| |||| || | || | |||||| ||| | | Sbjct: 1078 tctagggattacaacgataagaccaccaggtagtggcttatttatagcatagagtcagtc 1019 Query: 257 ctcgctggcaaacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaacctt 316 || |||||||| || |||||||||||||| || ||| |||||||| || ||||||||| Sbjct: 1018 cttgctggcaaccgtctgaagaagtttactggtactgagggcaacctatgtctgaacctt 959 Query: 317 gggtgcctcatggcatagaaccctcctaatgctgcgagaacctggagcggtgt 369 ||||||||||| ||||||||||||||||||| || | ||| || |||||||| Sbjct: 958 gggtgcctcatcacatagaaccctcctaatgcagcaataacttgaagcggtgt 906
>dbj|AK073897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075A06, full insert sequence Length = 3730 Score = 119 bits (60), Expect = 8e-24 Identities = 171/208 (82%) Strand = Plus / Minus Query: 207 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgccctcgctggca 266 |||| |||||||||||||||| | ||| || | ||||| ||||| ||||| ||||||| Sbjct: 3519 acaatgataaggccaccagatggcagctattttatagcatgctgtcggcccttgctggca 3460 Query: 267 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 326 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 3459 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 3400 Query: 327 tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtaaagcactatcg 386 || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| | Sbjct: 3399 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 3340 Query: 387 cggctatgaaacagaatagcacaaatat 414 | ||||||| ||| || || |||||||| Sbjct: 3339 ctgctatgagacaaaagaggacaaatat 3312
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence Length = 84361 Score = 119 bits (60), Expect = 8e-24 Identities = 171/208 (82%) Strand = Plus / Minus Query: 207 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgccctcgctggca 266 |||| |||||||||||||||| | ||| || | ||||| ||||| | ||| ||||||| Sbjct: 60289 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 60230 Query: 267 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 326 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 60229 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 60170 Query: 327 tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtaaagcactatcg 386 || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| | Sbjct: 60169 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 60110 Query: 387 cggctatgaaacagaatagcacaaatat 414 | ||||||| |||||| || |||||||| Sbjct: 60109 ctgctatgagacagaagaggacaaatat 60082
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 111 bits (56), Expect = 2e-21 Identities = 170/208 (81%) Strand = Plus / Minus Query: 207 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgccctcgctggca 266 |||| |||||||||||||||| | ||| || | ||||| ||||| | ||| ||||||| Sbjct: 34954907 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 34954848 Query: 267 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 326 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 34954847 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 34954788 Query: 327 tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtaaagcactatcg 386 || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| | Sbjct: 34954787 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 34954728 Query: 387 cggctatgaaacagaatagcacaaatat 414 | ||||||| ||| || || |||||||| Sbjct: 34954727 ctgctatgagacaaaagaggacaaatat 34954700
>dbj|AK102910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113J04, full insert sequence Length = 3717 Score = 111 bits (56), Expect = 2e-21 Identities = 170/208 (81%) Strand = Plus / Minus Query: 207 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgccctcgctggca 266 |||| |||||||||||||||| | ||| || | ||||| ||||| | ||| ||||||| Sbjct: 3497 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 3438 Query: 267 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 326 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 3437 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 3378 Query: 327 tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtaaagcactatcg 386 || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| | Sbjct: 3377 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 3318 Query: 387 cggctatgaaacagaatagcacaaatat 414 | ||||||| ||| || || |||||||| Sbjct: 3317 ctgctatgagacaaaagaggacaaatat 3290
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 111 bits (56), Expect = 2e-21 Identities = 170/208 (81%) Strand = Plus / Minus Query: 207 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgccctcgctggca 266 |||| |||||||||||||||| | ||| || | ||||| ||||| | ||| ||||||| Sbjct: 13959 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 13900 Query: 267 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 326 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 13899 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 13840 Query: 327 tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtaaagcactatcg 386 || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| | Sbjct: 13839 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 13780 Query: 387 cggctatgaaacagaatagcacaaatat 414 | ||||||| ||| || || |||||||| Sbjct: 13779 ctgctatgagacaaaagaggacaaatat 13752
>ref|XM_474407.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3036 Score = 105 bits (53), Expect = 1e-19 Identities = 143/173 (82%) Strand = Plus / Minus Query: 242 agcatactgtccgccctcgctggcaaacgcctgaagaagtttaccggcgttgaaggcaac 301 ||||| ||||| | ||| ||||||| || |||||||| || || ||||||||||||||| Sbjct: 3032 agcatgctgtcggtccttgctggcagtcgtctgaagaaattcactggcgttgaaggcaac 2973 Query: 302 ctgtgcctgaaccttgggtgcctcatggcatagaaccctcctaatgctgcgagaacctgg 361 || | |||||||| |||||||||||| ||||||||||| | |||||||| ||||| ||| Sbjct: 2972 ctatatctgaacctcgggtgcctcatgacatagaaccctgccaatgctgcaagaacttgg 2913 Query: 362 agcggtgtgacgtaaagcactatcgcggctatgaaacagaatagcacaaatat 414 || ||||| || || || ||||| || ||||||| ||| || || |||||||| Sbjct: 2912 agtggtgtaacatacaggactattgctgctatgagacaaaagaggacaaatat 2860
>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence Length = 612 Score = 46.1 bits (23), Expect = 0.092 Identities = 38/43 (88%) Strand = Plus / Plus Query: 240 acagcatactgtccgccctcgctggcaaacgcctgaagaagtt 282 ||||||| ||||| | |||||| |||| ||||||||||||||| Sbjct: 353 acagcatgctgtcagtcctcgccggcagacgcctgaagaagtt 395
>gb|AY104073.1| Zea mays PCO099302 mRNA sequence Length = 1254 Score = 46.1 bits (23), Expect = 0.092 Identities = 38/43 (88%) Strand = Plus / Minus Query: 240 acagcatactgtccgccctcgctggcaaacgcctgaagaagtt 282 ||||||| ||||| | |||||| |||| ||||||||||||||| Sbjct: 989 acagcatgctgtcggtcctcgccggcagacgcctgaagaagtt 947
>gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2, complete sequence Length = 180221 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 atggcatagaaccctcctaat 346 ||||||||||||||||||||| Sbjct: 15003 atggcatagaaccctcctaat 14983
>ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 mRNA, complete cds Length = 2557 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 303 tgtgcctgaaccttgggtgcctca 326 |||||||||||||||| ||||||| Sbjct: 2466 tgtgcctgaaccttggatgcctca 2443
>gb|AY842481.1| Homo sapiens growth associated protein 43 (GAP43) gene, complete cds Length = 100848 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 ggctatgaaacagaatagca 407 |||||||||||||||||||| Sbjct: 85341 ggctatgaaacagaatagca 85360
>gb|AC091455.12| Mus musculus chromosome 1, clone RP23-23O9, complete sequence Length = 257924 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 aatgctgcgagaacctggag 363 |||||||||||||||||||| Sbjct: 52476 aatgctgcgagaacctggag 52495
>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence Length = 198636 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 acagacatggagtaattcta 200 |||||||||||||||||||| Sbjct: 133750 acagacatggagtaattcta 133769
>gb|AC132914.7| Mus musculus chromosome 1, clone RP24-318M2, complete sequence Length = 157264 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 aacagtcacaaataataacacagc 169 |||||||||||||||||| ||||| Sbjct: 129658 aacagtcacaaataataaaacagc 129635
>gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, complete sequence Length = 189666 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 acagacatggagtaattcta 200 |||||||||||||||||||| Sbjct: 164883 acagacatggagtaattcta 164864
>gb|BC070747.1| Xenopus laevis hypothetical protein MGC83751, mRNA (cDNA clone MGC:83751 IMAGE:6640465), complete cds Length = 2200 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gacagacatggagtaattct 199 |||||||||||||||||||| Sbjct: 923 gacagacatggagtaattct 904
>emb|CT030278.1| Xenopus tropicalis finished cDNA, clone TEgg068n01 Length = 2184 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gacagacatggagtaattct 199 |||||||||||||||||||| Sbjct: 896 gacagacatggagtaattct 877
>gb|AC162866.5| Mus musculus chromosome 1, clone RP23-90B23, complete sequence Length = 230597 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 aatgctgcgagaacctggag 363 |||||||||||||||||||| Sbjct: 21289 aatgctgcgagaacctggag 21270
>emb|X77646.2|TMPLA2ANI Trimeresurus mucrosquamatus phospholipase A2 antiplatelet protein mRNA Length = 445 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ggcgttgaaggcaacctgtg 306 |||||||||||||||||||| Sbjct: 53 ggcgttgaaggcaacctgtg 72
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project) Length = 90020 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 303 tgtgcctgaaccttgggtgcctca 326 |||||||||||||||| ||||||| Sbjct: 57053 tgtgcctgaaccttggatgcctca 57030
>emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in linkage group 4, complete sequence Length = 150030 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gatatttcatcaacatgctt 52 |||||||||||||||||||| Sbjct: 139743 gatatttcatcaacatgctt 139762
>gb|AC012598.16| Homo sapiens 3 BAC RP11-237K10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163538 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 ggctatgaaacagaatagca 407 |||||||||||||||||||| Sbjct: 140912 ggctatgaaacagaatagca 140893
>gb|AC087465.5| Homo sapiens chromosome 15, clone RP11-94P14, complete sequence Length = 163320 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ttccaaaacctggcaagtca 70 |||||||||||||||||||| Sbjct: 22717 ttccaaaacctggcaagtca 22698
>ref|NM_207096.1| Danio rerio wingless-type MMTV integration site family, member 16 (wnt16), mRNA Length = 2005 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gatatttcatcaacatgctt 52 |||||||||||||||||||| Sbjct: 1314 gatatttcatcaacatgctt 1295
>emb|BX830559.1|CNS09YQ0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZB04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2560 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 303 tgtgcctgaaccttgggtgcctca 326 |||||||||||||||| ||||||| Sbjct: 2470 tgtgcctgaaccttggatgcctca 2447
>gb|BC066432.1| Danio rerio wingless-type MMTV integration site family, member 16, mRNA (cDNA clone MGC:77293 IMAGE:6965366), complete cds Length = 2005 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gatatttcatcaacatgctt 52 |||||||||||||||||||| Sbjct: 1314 gatatttcatcaacatgctt 1295 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,209,154 Number of Sequences: 3902068 Number of extensions: 3209154 Number of successful extensions: 86014 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85942 Number of HSP's gapped (non-prelim): 67 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)