ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC150385.2| Branchiostoma floridae clone CH302-101G3, complet... 42 0.83
2emb|AL121912.18|HSJ1004I9 Human DNA sequence from clone RP5-1004... 42 0.83
3gb|AC091607.11| Homo sapiens 3 BAC RP11-118D22 (Roswell Park Can... 42 0.83
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.83
5dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.83
6emb|AL162171.4|CNS01RHP Human chromosome 14 DNA sequence BAC R-5... 42 0.83
7emb|AL121768.4|CNS01DSB Human chromosome 14 DNA sequence BAC R-9... 42 0.83
8emb|CR853286.10| Zebrafish DNA sequence from clone DKEY-218F9 in... 40 3.3
9gb|AC138270.12| Mus musculus chromosome 7, clone RP23-323F17, co... 40 3.3
10emb|AL135903.12| Human DNA sequence from clone RP11-30P6 on chro... 40 3.3
11emb|CR932417.12| Human DNA sequence from clone XX-D_24I13, compl... 40 3.3
12emb|CR759967.5| Zebrafish DNA sequence from clone DKEY-94P13 in ... 40 3.3
13gb|AC116157.4| Homo sapiens chromosome 15, clone RP11-1006B19, c... 40 3.3
14gb|AC104068.3| Homo sapiens BAC clone RP11-252F15 from 4, comple... 40 3.3
15gb|AC022684.5|AC022684 Homo sapiens, clone RP11-59H18, complete ... 40 3.3
16gb|AC003662.3| Homo sapiens chromosome 17, clone CTB-104N19, com... 40 3.3
17emb|BX544879.6| Human DNA sequence from clone RP11-769P22 on chr... 40 3.3
18gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 3.3
19dbj|AP001524.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 3.3
20dbj|AP000916.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.3

>gb|AC150385.2| Branchiostoma floridae clone CH302-101G3, complete sequence
          Length = 121661

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   agccaagactgaagaaggcca 121
             |||||||||||||||||||||
Sbjct: 40030 agccaagactgaagaaggcca 40050



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>emb|AL121912.18|HSJ1004I9 Human DNA sequence from clone RP5-1004I9 on chromosome 20 Contains
            the 3' end of a novel gene (LOC284788), complete sequence
          Length = 117757

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 180  ttttccaaaacaattagcgaaaatg 204
            ||||||||||||||| |||||||||
Sbjct: 3974 ttttccaaaacaattggcgaaaatg 3950



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>gb|AC091607.11| Homo sapiens 3 BAC RP11-118D22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 175447

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 156   ccccaaattcagtggcctctg 176
             |||||||||||||||||||||
Sbjct: 93878 ccccaaattcagtggcctctg 93898



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 22       tttctgttttacaaacttcag 42
                |||||||||||||||||||||
Sbjct: 28129567 tttctgttttacaaacttcag 28129547



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>dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1717_A09
          Length = 203132

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 22     tttctgttttacaaacttcag 42
              |||||||||||||||||||||
Sbjct: 119214 tttctgttttacaaacttcag 119194



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>emb|AL162171.4|CNS01RHP Human chromosome 14 DNA sequence BAC R-507K2 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197550

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 114   gaaggccaaaagagaagcatattta 138
             ||||||||||| |||||||||||||
Sbjct: 24058 gaaggccaaaacagaagcatattta 24034



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>emb|AL121768.4|CNS01DSB Human chromosome 14 DNA sequence BAC R-976B16 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 213239

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 114  gaaggccaaaagagaagcatattta 138
            ||||||||||| |||||||||||||
Sbjct: 3211 gaaggccaaaacagaagcatattta 3235



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>emb|CR853286.10| Zebrafish DNA sequence from clone DKEY-218F9 in linkage group 19,
              complete sequence
          Length = 163733

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    ctattttccaaaacaattag 196
              ||||||||||||||||||||
Sbjct: 142303 ctattttccaaaacaattag 142322



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>gb|AC138270.12| Mus musculus chromosome 7, clone RP23-323F17, complete sequence
          Length = 213855

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 42    gattatgatcccagctcaaaagca 65
             ||||||| ||||||||||||||||
Sbjct: 46828 gattatgttcccagctcaaaagca 46805



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>emb|AL135903.12| Human DNA sequence from clone RP11-30P6 on chromosome 6 Contains a
             karyopherin alpha 5 (importin alpha 6) (KPNA5) pseudogene,
             a keratin 18 (KRT18) pseudogene, a tumor protein,
             translationally-controlled 1 (TPT1) pseudogene, a
             pseudogene similar to dUTP pyrophosphatase (DUT), the NT5E
             gene for 5'-nucleotidase ecto (CD73) and a CpG island,
             complete sequence
          Length = 170232

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   tgaagaaggccaaaagagaa 129
             ||||||||||||||||||||
Sbjct: 59784 tgaagaaggccaaaagagaa 59803



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>emb|CR932417.12| Human DNA sequence from clone XX-D_24I13, complete sequence
          Length = 198202

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    gccaaaagagaagcatattt 137
              ||||||||||||||||||||
Sbjct: 191884 gccaaaagagaagcatattt 191865



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>emb|CR759967.5| Zebrafish DNA sequence from clone DKEY-94P13 in linkage group 5,
             complete sequence
          Length = 61816

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    aaaacagccaagactgaaga 115
             ||||||||||||||||||||
Sbjct: 51079 aaaacagccaagactgaaga 51098



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>gb|AC116157.4| Homo sapiens chromosome 15, clone RP11-1006B19, complete sequence
          Length = 217659

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 42    gattatgatcccagctcaaaagca 65
             ||||||| ||||||||||||||||
Sbjct: 24662 gattatgttcccagctcaaaagca 24685



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>gb|AC104068.3| Homo sapiens BAC clone RP11-252F15 from 4, complete sequence
          Length = 137716

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    gagagagaaaacagccaaga 108
             ||||||||||||||||||||
Sbjct: 13632 gagagagaaaacagccaaga 13651



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>gb|AC022684.5|AC022684 Homo sapiens, clone RP11-59H18, complete sequence
          Length = 164879

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 42     gattatgatcccagctcaaaagca 65
              ||||||| ||||||||||||||||
Sbjct: 123401 gattatgttcccagctcaaaagca 123424



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>gb|AC003662.3| Homo sapiens chromosome 17, clone CTB-104N19, complete sequence
          Length = 94576

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   gccaaaagagaagcatattt 137
             ||||||||||||||||||||
Sbjct: 34813 gccaaaagagaagcatattt 34794



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>emb|BX544879.6| Human DNA sequence from clone RP11-769P22 on chromosome 17, complete
              sequence
          Length = 177152

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    gccaaaagagaagcatattt 137
              ||||||||||||||||||||
Sbjct: 174097 gccaaaagagaagcatattt 174078



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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 138     acagtgaaccgggcatttcc 157
               ||||||||||||||||||||
Sbjct: 1467273 acagtgaaccgggcatttcc 1467254



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>dbj|AP001524.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-702P11, complete
             sequence
          Length = 150847

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   gccaaaagagaagcatattt 137
             ||||||||||||||||||||
Sbjct: 32504 gccaaaagagaagcatattt 32523



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>dbj|AP000916.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-728D14, complete
              sequence
          Length = 192926

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    gccaaaagagaagcatattt 137
              ||||||||||||||||||||
Sbjct: 142989 gccaaaagagaagcatattt 143008


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,890,173
Number of Sequences: 3902068
Number of extensions: 2890173
Number of successful extensions: 57052
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57008
Number of HSP's gapped (non-prelim): 44
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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