>RM04_YEAST (P36517) 60S ribosomal protein L4, mitochondrial precursor (YmL4)|
           (MRP-L4)
          Length = 319

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
 Frame = +1

Query: 31  PSNSKRIKSNLTTATKQL----PKPPVDPILSCPNERPIWLF--HLP*INSYGPLPRSAH 192
           P +  R  + LT  +  L    P PP    L CP++ P+W F  +   I S   LP S+H
Sbjct: 30  PKDKIRPPTQLTHHSNNLRITEPIPPTTSNLRCPDDHPLWQFFSNKKFIRSADDLPPSSH 89

Query: 193 PIPSSFSPIK 222
             P S   ++
Sbjct: 90  IRPWSIPELR 99

>Y485_PSEAE (Q9I633) Hypothetical protein PA0485|
          Length = 298

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 89  SLPWIQFFLVPTKGPFGYFTSLKSIPTAHYPGRPIQFHLLFPLS 220
           SLPW+   L  T G +G     K  P A  PG  ++  LL PL+
Sbjct: 149 SLPWVSLVLALTFGFYGLIR--KKAPVAALPGLVVETWLLLPLA 190

>SID2_USTMA (O43103) Ferrichrome siderophore peptide synthetase (EC 6.-.-.-)|
          Length = 3947

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 54  FYSFGIGGTICNCKLG 7
           FY++G+GGTIC+C  G
Sbjct: 478 FYTWGLGGTICSCPRG 493

>COAT_MUMIM (P07302) Coat protein VP1 [Contains: Coat protein VP2]|
          Length = 718

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 123 RKAHLVISPPLNQFLRPITPVGPSNSIFF 209
           + A LV+ PPLN  L    P+G  N I F
Sbjct: 546 QSAPLVVPPPLNGILTNANPIGTKNDIHF 574

>M3K14_MOUSE (Q9WUL6) Mitogen-activated protein kinase kinase kinase 14 (EC|
           2.7.11.25) (NF-kappa beta-inducing kinase)
           (Serine/threonine-protein kinase NIK)
          Length = 942

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 82  LPKPPVDPILS---CPNERPIWLFHLP*INSYGPLPRSAHPIPSSFSP 216
           LP+P +  ++S   C N   +W  H P   + GP P   HP P S  P
Sbjct: 221 LPRPELHKLISPLQCLNH--VWKLHHP--QATGPRPHPTHPFPYSGMP 264

>COAT_MUMIV (P03137) Coat protein VP1 [Contains: Coat protein VP2]|
          Length = 716

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 123 RKAHLVISPPLNQFLRPITPVGPSNSIFF 209
           + A LV+ PPLN  L    P+G  N I F
Sbjct: 544 QSAPLVVPPPLNGILTNANPIGTKNDIHF 572

>AMEL_MONDO (Q28462) Amelogenin|
          Length = 202

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = +1

Query: 31  PSNSKRIKSNLTTATKQLPKPPVDPILSCPNERPI--WLFHLP*INSYGPLPRSAHPI-- 198
           PS+S   + ++     Q P PP  P++  P + P+     H P +   G  P    P   
Sbjct: 60  PSHSLPPQHHIPIMAAQQPAPPQQPVMPVPGQHPMAPTQHHQPNLPQPGQQPYQPQPAQQ 119

Query: 199 PSSFSPIK 222
           P    PI+
Sbjct: 120 PQPHQPIQ 127

>SNX41_CRYNE (Q5KKB9) Sorting nexin-41|
          Length = 638

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 108 SFLSQRKAHLVISPPLNQFLRPITPVGPSNSIFFFPYQMKSILPTWNFSDHRRSSDSQF 284
           S LS+   H   +P  N   +P TP  PS +     Y    +LPT + S   R  D +F
Sbjct: 211 SLLSKNPLH---APSHNPTFQPTTPTSPSEAPATTSYIAHHLLPTPSPSHPLRQPDQRF 266

>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
            (Endostatin-XV)]
          Length = 1367

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 85   PKPPVDPILSCPNERPIWLFHLP*INS 165
            P+PP++PILS   ERP+   HL  +N+
Sbjct: 1180 PQPPLNPILSANYERPV--LHLVALNT 1204

>YE45_SCHPO (O13965) Hypothetical protein C24C9.05c in chromosome I|
          Length = 730

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 31  PSNSKRIKSNLTTATKQLPKPPV 99
           PSN+++ +S    + +QLPKPPV
Sbjct: 434 PSNTQQSESTYEYSARQLPKPPV 456

>UNC13_CAEEL (P27715) Phorbol ester/diacylglycerol-binding protein unc-13|
           (Uncoordinated protein 13)
          Length = 2155

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +1

Query: 4   ATKFTVANRPSNSKRIKSNLTTATKQLPKPPVDPILSCPNERPIWLFHL---P*INSYGP 174
           AT+F   +  +N+   K+ L + T+  P P   P  S  N  P     +   P +NS  P
Sbjct: 650 ATRFYANHNNNNNNVSKNELDSTTETPPDPSRTPSTSSMNPVPSLAVPMSPGPYLNSDPP 709

Query: 175 LPRSAHP 195
            P S +P
Sbjct: 710 SPVSPNP 716

>Y34F_DROME (Q9W5D0) Hypothetical protein CG12467 in chromosome 1|
          Length = 1561

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 52  KSNLTTATKQLPKPPVDPILSCPNERPIWLFHLP*INSYGP 174
           ++ LT A     + P   ILS   ER  WL+HL  ++  GP
Sbjct: 828 QARLTVAIYPAHQGPTYLILSGKPERDNWLYHLTVVSGGGP 868

>FOG2_MOUSE (Q8CCH7) Zinc finger protein ZFPM2 (Zinc finger protein multitype|
           2) (Friend of GATA protein 2) (Friend of GATA-2) (FOG-2)
           (mFOG-2)
          Length = 1151

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
 Frame = +3

Query: 63  NNRNKTTPKASRGSNSFL---SQRKAHLVISPPLNQFLRPITPVGPSNSIFFFPY----- 218
           N R +  P A++ + S+    S+  +  + S P+   + P  PVGP  S F FP      
Sbjct: 451 NQRPEIQPAANKQNFSYTKIKSEPSSPRLASSPVQPNIGPSFPVGPFLSQFAFPQDITMV 510

Query: 219 -QMKSILPTWNFSDHRR 266
            Q   IL   +   HRR
Sbjct: 511 PQASEILAKMSELVHRR 527

>FOG2_HUMAN (Q8WW38) Zinc finger protein ZFPM2 (Zinc finger protein multitype|
           2) (Friend of GATA protein 2) (FOG-2) (hFOG-2)
          Length = 1151

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
 Frame = +3

Query: 78  TTPKASRGSNSFLSQRKAHLVISPPLNQFLRPITPVGPSNSIFFFPY------QMKSILP 239
           TT K S       S+  +  + S P+   + P  PVGP  S F FP       Q   IL 
Sbjct: 459 TTNKQSFSYTKIKSEPSSPRLASSPVQPNIGPSFPVGPFLSQFSFPQDITMVPQASEILA 518

Query: 240 TWNFSDHRR 266
             +   HRR
Sbjct: 519 KMSELVHRR 527


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,964,644
Number of Sequences: 219361
Number of extensions: 1080111
Number of successful extensions: 2715
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2714
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)