>gb|AY029259.1| Hordeum vulgare alpha-L-arabinofuranosidase/beta-D-xylosidase
            isoenzyme ARA-I mRNA, complete cds
          Length = 2647

 Score =  567 bits (286), Expect = e-159
 Identities = 292/294 (99%)
 Strand = Plus / Minus

                                                                        
Query: 13   tttacagttgcaaatcgtccctccaattccaaacgaataaaatcaaatttaacaaccgca 72
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2634 tttacagttgcaaatcgtccctccaattccaaacgaataaaatcaaatttaacaaccgca 2575

                                                                        
Query: 73   acaaaacaactcccaaagcctcccgtggatccaattctttcttgtcccaacgaaaggccc 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2574 acaaaacaactcccaaagcctcccgtggatccaattctttcttgtcccaacgaaaggccc 2515

                                                                        
Query: 133  atttggttatttcacctcccttaaatcaattcctacggcccattaccccggtcggcccat 192
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2514 atttggttatttcacctcccttaaatcgattcctacggcccattaccccggtcggcccat 2455

                                                                        
Query: 193  ccaattccatcttctttttcccctatcaaatgaaatcgatcctccctacgtggaattttt 252
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2454 ccaattccatcttctttttcccctatcaaatgaaatcgattctccctacgtggaattttt 2395

                                                                  
Query: 253  ctgatcaccgtcgatcatcagactcgcagttccacggtgtgcttgaggtcgccg 306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2394 ctgatcaccgtcgatcatcagactcgcagttccacggtgtgcttgaggtcgccg 2341

>emb|AL691468.12| Mouse DNA sequence from clone RP23-20K13 on chromosome 4 Contains the 3'
              end of a novel gene (4933412J03Rik), a
              glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene,
              the Tnfsf15 gene for tumor necrosis factor (ligand)
              superfamily member 15 and the 3' end of the Tnfsf8 for
              tumor necrosis factor (ligand) superfamily member 8,
              complete sequence
          Length = 212420

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 203    cttctttttcccctatcaaatg 224
              ||||||||||||||||||||||
Sbjct: 201544 cttctttttcccctatcaaatg 201565

>ref|XM_474061.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2298

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 289  gtgtgcttgaggtcgccgacg 309
            |||||||||||||||||||||
Sbjct: 2279 gtgtgcttgaggtcgccgacg 2259

>gb|AC112494.2| Homo sapiens X BAC RP11-1L9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155681

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 189    ccatccaattccatcttcttt 209
              |||||||||||||||||||||
Sbjct: 119520 ccatccaattccatcttcttt 119500

>emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chromosome 9, complete
             sequence
          Length = 147810

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    aataaaatcaaatttaacaac 68
             |||||||||||||||||||||
Sbjct: 56521 aataaaatcaaatttaacaac 56541

>gb|AC108734.10| Homo sapiens 3 BAC RP11-259P15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 125990

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 54     atcaaatttaacaaccgcaacaaaa 78
              ||||||||||||||| |||||||||
Sbjct: 102960 atcaaatttaacaacagcaacaaaa 102984

>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01,
              complete sequence
          Length = 153643

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 289    gtgtgcttgaggtcgccgacg 309
              |||||||||||||||||||||
Sbjct: 142131 gtgtgcttgaggtcgccgacg 142151



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 14     ttacagttgcaaatcgtccctccaa 38
              |||||||||||||||| ||||||||
Sbjct: 141858 ttacagttgcaaatcgaccctccaa 141882

>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
             complete sequence
          Length = 126659

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 289   gtgtgcttgaggtcgccgacg 309
             |||||||||||||||||||||
Sbjct: 18418 gtgtgcttgaggtcgccgacg 18438



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 14    ttacagttgcaaatcgtccctccaa 38
             |||||||||||||||| ||||||||
Sbjct: 18145 ttacagttgcaaatcgaccctccaa 18169

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 289      gtgtgcttgaggtcgccgacg 309
                |||||||||||||||||||||
Sbjct: 32623397 gtgtgcttgaggtcgccgacg 32623417



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 14       ttacagttgcaaatcgtccctccaa 38
                |||||||||||||||| ||||||||
Sbjct: 32623124 ttacagttgcaaatcgaccctccaa 32623148

>emb|BX247870.5| Zebrafish DNA sequence from clone RP71-24B12 in linkage group 14,
             complete sequence
          Length = 148854

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 76    aaacaactcccaaagcctccc 96
             |||||||||||||||||||||
Sbjct: 80405 aaacaactcccaaagcctccc 80385

>dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065A06, full
            insert sequence
          Length = 2821

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 14   ttacagttgcaaatcgtccctccaa 38
            |||||||||||||||| ||||||||
Sbjct: 2721 ttacagttgcaaatcgaccctccaa 2697



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 289  gtgtgcttgaggtcgccgacg 309
            |||||||||||||||||||||
Sbjct: 2448 gtgtgcttgaggtcgccgacg 2428

>dbj|AK071973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J07, full
            insert sequence
          Length = 1746

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 14   ttacagttgcaaatcgtccctccaa 38
            |||||||||||||||| ||||||||
Sbjct: 1682 ttacagttgcaaatcgaccctccaa 1658



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 289  gtgtgcttgaggtcgccgacg 309
            |||||||||||||||||||||
Sbjct: 1409 gtgtgcttgaggtcgccgacg 1389

>gb|U33007.1|SCD9461 Saccharomyces cerevisiae chromosome IV lambda 3641 and cosmids 9461,
             9831, and 9410
          Length = 78500

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 199   ccatcttctttttcccctatc 219
             |||||||||||||||||||||
Sbjct: 42258 ccatcttctttttcccctatc 42278

>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 197     ttccatcttctttttcccctatca 220
               ||||||||| ||||||||||||||
Sbjct: 1304518 ttccatcttttttttcccctatca 1304495

>gb|AC146004.3| Pan troglodytes BAC clone RP43-161E12 from 7, complete sequence
          Length = 129417

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    aaaacaactcccaaagcctc 94
             ||||||||||||||||||||
Sbjct: 50042 aaaacaactcccaaagcctc 50061

>gb|AC005030.1| Homo sapiens BAC clone GS1-589P19 from 7, complete sequence
          Length = 148915

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    aaaacaactcccaaagcctc 94
             ||||||||||||||||||||
Sbjct: 67838 aaaacaactcccaaagcctc 67857

>ref|XM_570495.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CND04750) partial mRNA
          Length = 816

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 197 ttccatcttctttttcccctatca 220
           ||||||||| ||||||||||||||
Sbjct: 102 ttccatcttttttttcccctatca 125

>gb|AE012383.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 291
            of 460 of the complete genome
          Length = 10211

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 282  ttccacggtgtgcttgaggtcgcc 305
            ||||||||||||| ||||||||||
Sbjct: 1186 ttccacggtgtgcgtgaggtcgcc 1163

>emb|BX255915.13| Zebrafish DNA sequence from clone CH211-245L1 in linkage group 5,
            complete sequence
          Length = 157382

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   caaacgaataaaatcaaatt 61
            ||||||||||||||||||||
Sbjct: 3795 caaacgaataaaatcaaatt 3814

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 282     ttccacggtgtgcttgaggtcgcc 305
               ||||||||||||| ||||||||||
Sbjct: 1704419 ttccacggtgtgcgtgaggtcgcc 1704442

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 48      aataaaatcaaatttaacaa 67
               ||||||||||||||||||||
Sbjct: 2271224 aataaaatcaaatttaacaa 2271243

>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0535G04
          Length = 154180

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     aataaaatcaaatttaacaa 67
              ||||||||||||||||||||
Sbjct: 130681 aataaaatcaaatttaacaa 130700

>emb|AL954168.6| Zebrafish DNA sequence from clone DKEY-3I24 in linkage group 17,
             complete sequence
          Length = 205011

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 34    tccaattccaaacgaataaaatcaaatt 61
             ||||||||||||| ||||||||||||||
Sbjct: 40013 tccaattccaaac-aataaaatcaaatt 39987

>gb|AY112378.1| Zea mays CL47610_1 mRNA sequence
          Length = 676

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  cccgtggatccaattctttc 113
           ||||||||||||||||||||
Sbjct: 216 cccgtggatccaattctttc 235


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,116,828
Number of Sequences: 3902068
Number of extensions: 3116828
Number of successful extensions: 60025
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 59933
Number of HSP's gapped (non-prelim): 94
length of query: 309
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 287
effective length of database: 17,147,199,772
effective search space: 4921246334564
effective search space used: 4921246334564
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)