ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4,... 62 1e-06
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
3emb|AL670230.12| Mouse DNA sequence from clone RP23-15D12 on chr... 44 0.32
4gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Ca... 42 1.3
5emb|AL390732.10| Human DNA sequence from clone RP11-439N12 on ch... 40 5.1
6emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19,... 40 5.1
7gb|AC156016.2| Mus musculus BAC clone RP24-320A12 from chromosom... 40 5.1

>emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08,
             complete sequence
          Length = 130521

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                            
Query: 160   tcgtattggtaatccaccaataaccgcccaatcatatacactctaca 206
             |||||||| ||||||||||| ||  ||||||||||||||||||||||
Sbjct: 80082 tcgtattgataatccaccaacaattgcccaatcatatacactctaca 80036



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                               
Query: 160      tcgtattggtaatccaccaataaccgcccaatcatatacactctaca 206
                |||||||| ||||||||||| ||  ||||||||||||||||||||||
Sbjct: 15893517 tcgtattgataatccaccaacaattgcccaatcatatacactctaca 15893471



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>emb|AL670230.12| Mouse DNA sequence from clone RP23-15D12 on chromosome X, complete
              sequence
          Length = 207966

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 219    agctataagagaacttggggac 240
              ||||||||||||||||||||||
Sbjct: 110822 agctataagagaacttggggac 110843



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>gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 198488

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   caaagggctcatttaacaaat 271
             |||||||||||||||||||||
Sbjct: 98002 caaagggctcatttaacaaat 97982



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>emb|AL390732.10| Human DNA sequence from clone RP11-439N12 on chromosome 9 Contains a
              novel gene similar to mouse 9130404H11Rik protein, the CER1
              gene for cerberus 1 homolog, cysteine knot superfamily
              (Xenopus laevis) and the 3' end of a novel gene (FLJ25416),
              complete sequence
          Length = 143246

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    catcataacaagtgtgtagt 332
              ||||||||||||||||||||
Sbjct: 101867 catcataacaagtgtgtagt 101848



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>emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19, complete sequence
          Length = 148298

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 112   atggattcactgaatcctgcaacg 135
             |||| |||||||||||||||||||
Sbjct: 51228 atggcttcactgaatcctgcaacg 51205



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>gb|AC156016.2| Mus musculus BAC clone RP24-320A12 from chromosome 14, complete
             sequence
          Length = 154465

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   gcaccacccataaacaaata 368
             ||||||||||||||||||||
Sbjct: 96052 gcaccacccataaacaaata 96033


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,933,318
Number of Sequences: 3902068
Number of extensions: 2933318
Number of successful extensions: 86128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86106
Number of HSP's gapped (non-prelim): 22
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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