>COQ9_RAT (Q68FT1) Ubiquinone biosynthesis protein COQ9, mitochondrial|
           precursor
          Length = 312

 Score = 36.2 bits (82), Expect = 0.019
 Identities = 23/80 (28%), Positives = 37/80 (46%)
 Frame = -3

Query: 386 DIQHAITDPGSDLDWCLCVK*TVVGSI*AISEIYMITYSLPGFRVTWTSADEHIKDDLDL 207
           D+ H   D  +D +W    +  V+  I   +E+ M+  S P F  TW   D  I D +++
Sbjct: 220 DMWHYAGDQSTDFNWY--TRRAVLAGIYNTTELVMMQDSSPDFEDTWRFLDNRINDAMNM 277

Query: 206 QSTAQEEEVQAIILVAENMG 147
             TA++ +     LV   MG
Sbjct: 278 GHTAKQVKSTGEALVQGLMG 297

>COQ9_BOVIN (Q2NL34) Ubiquinone biosynthesis protein COQ9, mitochondrial|
           precursor
          Length = 319

 Score = 34.7 bits (78), Expect = 0.057
 Identities = 22/80 (27%), Positives = 37/80 (46%)
 Frame = -3

Query: 386 DIQHAITDPGSDLDWCLCVK*TVVGSI*AISEIYMITYSLPGFRVTWTSADEHIKDDLDL 207
           D+ H   D  +D +W    +  V+  I   +E+ M+  S P F  TW   +  I D +++
Sbjct: 227 DMWHYAGDQSTDFNWY--TRRAVLAGIYNTTELVMMQDSSPDFEDTWRFLENRISDAMNM 284

Query: 206 QSTAQEEEVQAIILVAENMG 147
             TA++ +     LV   MG
Sbjct: 285 GHTAKQVKSTGEALVQGLMG 304

>COQ9_MOUSE (Q8K1Z0) Ubiquinone biosynthesis protein COQ9, mitochondrial|
           precursor
          Length = 313

 Score = 34.7 bits (78), Expect = 0.057
 Identities = 22/80 (27%), Positives = 37/80 (46%)
 Frame = -3

Query: 386 DIQHAITDPGSDLDWCLCVK*TVVGSI*AISEIYMITYSLPGFRVTWTSADEHIKDDLDL 207
           D+ H   D  +D +W    +  V+  I   +E+ M+  S P F  TW   +  I D +++
Sbjct: 221 DMWHYAGDQSTDFNWY--TRRAVLAGIYNTTELVMMQDSSPDFEDTWRFLENRINDAMNM 278

Query: 206 QSTAQEEEVQAIILVAENMG 147
             TA++ +     LV   MG
Sbjct: 279 GHTAKQVKSTGEALVQGLMG 298

>COQ9_HUMAN (O75208) Ubiquinone biosynthesis protein COQ9, mitochondrial|
           precursor
          Length = 318

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = -3

Query: 386 DIQHAITDPGSDLDWCLCVK*TVVGSI*AISEIYMITYSLPGFRVTWTSADEHIKDDLDL 207
           D+ H   D  +D +W    +  ++ +I   +E+ M+  S P F  TW   +  + D +++
Sbjct: 226 DMWHYAGDQSTDFNWY--TRRAMLAAIYNTTELVMMQDSSPDFEDTWRFLENRVNDAMNM 283

Query: 206 QSTAQEEEVQAIILVAENMG 147
             TA++ +     LV   MG
Sbjct: 284 GHTAKQVKSTGEALVQGLMG 303

>COQ9_XENTR (Q5RJV0) Ubiquinone biosynthesis protein COQ9, mitochondrial|
           precursor
          Length = 317

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 386 DIQHAITDPGSDLDWCLCVK*TVVGSI*AISEIYMITYSLPGFRVTWTSADEHIKDDLDL 207
           DI H   D  +D+ W    +  V+  I   +E+ M+  S P F  TW   +  I + + +
Sbjct: 225 DIWHYAGDQSTDVSWY--TRRAVLTGIYNTTELVMLQDSSPDFEDTWKFLENRISEAMTM 282

Query: 206 QSTAQE 189
            ++ ++
Sbjct: 283 GTSVKQ 288

>COQ9A_XENLA (Q3B8B2) Ubiquinone biosynthesis protein COQ9-A, mitochondrial|
           precursor
          Length = 317

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = -3

Query: 386 DIQHAITDPGSDLDWCLCVK*TVVGSI*AISEIYMITYSLPGFRVTWTSADEHIKDDLDL 207
           DI H   D  +D+ W    +  V+  I   +E+ M+  S P F  TW   +  I + + +
Sbjct: 225 DIWHYAGDQSTDVSWY--TRRAVLTGIYNTTELVMLQDSSPDFEDTWKFLENRISEAMTM 282

Query: 206 QSTAQE 189
             + ++
Sbjct: 283 GDSVKQ 288

>AROK_HELHP (Q7VIH7) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 167

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -3

Query: 215 LDLQSTAQEEEVQAIILVAENMGEGTWRALDRIVQLWL----RNLYVASYSSFPLASHFL 48
           LD     ++   ++I  + E++GE  +R ++  + LWL    +N  +A+    P+ +   
Sbjct: 30  LDTDQIIEQNMGKSINEIFESVGESGFRRIESQLILWLSANVKNAVIATGGGMPIYNDVA 89

Query: 47  YTMYI 33
           Y  Y+
Sbjct: 90  YLGYV 94

>SSRP_ANAMM (Q5P9M7) SsrA-binding protein|
          Length = 149

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = -3

Query: 236 DEHIKDDLDLQSTAQEEEVQAIILVAENMGEGTWRALDRIVQLWLRNLYVASYSSFPLAS 57
           D  +  + D        EV+++     NMG+     L++ ++LW+ NL+++ Y+     +
Sbjct: 13  DYFVLQEYDAGMVLVGSEVKSLRQRKVNMGDAY--VLEKDMELWIHNLHISEYNRADRKN 70

Query: 56  H 54
           H
Sbjct: 71  H 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,554,996
Number of Sequences: 219361
Number of extensions: 962719
Number of successful extensions: 2250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2250
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)