ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, com... 42 0.61
2gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, com... 42 0.61
3gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, com... 42 0.61
4ref|XM_638349.1| Dictyostelium discoideum adhesion modulation pr... 40 2.4
5gb|AY368388.1| Thelymitra sp. Chase O-489 maturase K-like (matK)... 40 2.4
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.4
7gb|AC116960.2| Dictyostelium discoideum chromosome 2 map complem... 40 2.4
8dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic D... 40 2.4
9dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.4
10emb|AJ310077.1|TIX310077 Thelymitra ixioides chloroplast matK ps... 40 2.4
11emb|AJ310076.1|TCA310076 Thelymitra carnea chloroplast matK pseu... 40 2.4
12emb|AJ310002.1|CCA310002 Calochilus campestris chloroplast matK ... 40 2.4
13gb|AC153580.19| Mus musculus 6 BAC RP23-389F23 (Roswell Park Can... 38 9.6
14gb|AE017129.1| Yersinia pestis biovar Medievalis str. 91001 sect... 38 9.6
15gb|AC132108.4| Mus musculus BAC clone RP24-257B11 from chromosom... 38 9.6
16gb|AC166251.6| Mus musculus BAC RP23-298H20 (Roswell Park Cance... 38 9.6
17gb|AE009952.1| Yersinia pestis KIM, complete genome 38 9.6
18gb|AC166261.6| Mus musculus BAC RP23-343K20 (Roswell Park Cance... 38 9.6
19gb|AC131704.3| Mus musculus BAC clone RP24-149D9 from chromosome... 38 9.6
20gb|AC125144.3| Mus musculus BAC clone RP24-346C2 from chromosome... 38 9.6
21ref|XM_648420.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 38 9.6
22emb|AL159166.12| Human DNA sequence from clone RP3-527G5 on chro... 38 9.6
23emb|AL035068.3|HS116G19 Human DNA sequence from clone RP1-116G19... 38 9.6
24emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 38 9.6
25emb|AJ414157.1| Yersinia pestis strain CO92 complete genome; seg... 38 9.6
26emb|BX546447.8| Zebrafish DNA sequence from clone DKEY-3D18 in l... 38 9.6
27gb|AC145335.15| Pan troglodytes clone rp43-26k12, complete sequence 38 9.6
28gb|AC090348.4| Homo sapiens chromosome 18, clone RP11-834M2, com... 38 9.6
29dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 38 9.6
30gb|AY566839.1| Macaca fascicularis MOG alpha-3 mRNA, complete cd... 38 9.6
31gb|AY566842.1| Macaca fascicularis MOG alpha-6 mRNA, complete cd... 38 9.6
32gb|AY566845.1| Macaca fascicularis MOG beta-3 mRNA, complete cds... 38 9.6
33gb|AC159214.2| Pan troglodytes BAC clone CH251-522M3 from chromo... 38 9.6
34gb|AC148698.1| Macaca mulatta Major Histocompatibility Complex B... 38 9.6
35gb|AC084591.1|CBRG42B20 Caenorhabditis briggsae cosmid G42B20, c... 38 9.6
36gb|AC093740.2| Homo sapiens BAC clone RP11-24G22 from 2, complet... 38 9.6
37emb|AL928960.25| Mouse DNA sequence from clone RP23-413K16 on ch... 38 9.6
38gb|AE015927.1| Clostridium tetani E88, complete genome 38 9.6
39gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 9.6
40gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge... 38 9.6 
>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence
          Length = 193682

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 105   gcaggaaccaaaaaagaaagg 125
             |||||||||||||||||||||
Sbjct: 86534 gcaggaaccaaaaaagaaagg 86554
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>gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, complete sequence
          Length = 199782

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 105    gcaggaaccaaaaaagaaagg 125
              |||||||||||||||||||||
Sbjct: 147113 gcaggaaccaaaaaagaaagg 147133
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>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence
          Length = 204569

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  gcaggaaccaaaaaagaaagg 125
            |||||||||||||||||||||
Sbjct: 8175 gcaggaaccaaaaaagaaagg 8195
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>ref|XM_638349.1| Dictyostelium discoideum adhesion modulation protein A
           (DDB0185088), partial mRNA
          Length = 855

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 28  tacacattacatcagaacaa 47
           ||||||||||||||||||||
Sbjct: 676 tacacattacatcagaacaa 657
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>gb|AY368388.1| Thelymitra sp. Chase O-489 maturase K-like (matK) gene, partial
           sequence; chloroplast gene for chloroplast product
          Length = 1799

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 ggaaccaaaaaagaaaggca 127
           ||||||||||||||||||||
Sbjct: 45  ggaaccaaaaaagaaaggca 26
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 170      attcccctttctactatgtg 189
                ||||||||||||||||||||
Sbjct: 14581440 attcccctttctactatgtg 14581421
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>gb|AC116960.2| Dictyostelium discoideum chromosome 2 map complement(1004496-821614)
             strain AX4, complete sequence
          Length = 182870

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    tacacattacatcagaacaa 47
             ||||||||||||||||||||
Sbjct: 84377 tacacattacatcagaacaa 84396
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>dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1164G11
          Length = 142699

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   attcccctttctactatgtg 189
             ||||||||||||||||||||
Sbjct: 62817 attcccctttctactatgtg 62798
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>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0514H03
          Length = 167230

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    attcccctttctactatgtg 189
              ||||||||||||||||||||
Sbjct: 140753 attcccctttctactatgtg 140734
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>emb|AJ310077.1|TIX310077 Thelymitra ixioides chloroplast matK pseudogene
          Length = 1196

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 ggaaccaaaaaagaaaggca 127
           ||||||||||||||||||||
Sbjct: 45  ggaaccaaaaaagaaaggca 26
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>emb|AJ310076.1|TCA310076 Thelymitra carnea chloroplast matK pseudogene
          Length = 1797

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 ggaaccaaaaaagaaaggca 127
           ||||||||||||||||||||
Sbjct: 45  ggaaccaaaaaagaaaggca 26
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>emb|AJ310002.1|CCA310002 Calochilus campestris chloroplast matK pseudogene
          Length = 1795

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 ggaaccaaaaaagaaaggca 127
           ||||||||||||||||||||
Sbjct: 45  ggaaccaaaaaagaaaggca 26
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>gb|AC153580.19| Mus musculus 6 BAC RP23-389F23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 180936

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     gattatgtctgcttagatg 71
              |||||||||||||||||||
Sbjct: 113247 gattatgtctgcttagatg 113265
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>gb|AE017129.1| Yersinia pestis biovar Medievalis str. 91001 section 3 of 16 of the
             complete genome
          Length = 290002

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ttacatcagaacaacatca 52
             |||||||||||||||||||
Sbjct: 27022 ttacatcagaacaacatca 27004
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>gb|AC132108.4| Mus musculus BAC clone RP24-257B11 from chromosome 3, complete sequence
          Length = 162109

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 69     atgtaccatcaatatatac 87
              |||||||||||||||||||
Sbjct: 120512 atgtaccatcaatatatac 120494
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>gb|AC166251.6| Mus musculus  BAC RP23-298H20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187073

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 106   caggaaccaaaaaagaaag 124
             |||||||||||||||||||
Sbjct: 38473 caggaaccaaaaaagaaag 38491
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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     ttacatcagaacaacatca 52
              |||||||||||||||||||
Sbjct: 752779 ttacatcagaacaacatca 752761
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>gb|AC166261.6| Mus musculus  BAC RP23-343K20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 190585

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 106   caggaaccaaaaaagaaag 124
             |||||||||||||||||||
Sbjct: 33702 caggaaccaaaaaagaaag 33684
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>gb|AC131704.3| Mus musculus BAC clone RP24-149D9 from chromosome 12, complete sequence
          Length = 163959

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 105   gcaggaaccaaaaaagaaaggca 127
             ||||||||||||| |||||||||
Sbjct: 61850 gcaggaaccaaaacagaaaggca 61828
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>gb|AC125144.3| Mus musculus BAC clone RP24-346C2 from chromosome 6, complete sequence
          Length = 171156

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 114   aaaaaagaaaggcagttga 132
             |||||||||||||||||||
Sbjct: 83258 aaaaaagaaaggcagttga 83240
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>ref|XM_648420.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (80.t00019)
           partial mRNA
          Length = 990

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 109 gaaccaaaaaagaaaggca 127
           |||||||||||||||||||
Sbjct: 679 gaaccaaaaaagaaaggca 697
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>emb|AL159166.12| Human DNA sequence from clone RP3-527G5 on chromosome 6 Contains a
             putative novel gene, complete sequence
          Length = 72139

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 161   atctagcttattccccttt 179
             |||||||||||||||||||
Sbjct: 25295 atctagcttattccccttt 25313
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>emb|AL035068.3|HS116G19 Human DNA sequence from clone RP1-116G19 on chromosome 22q12.1-12.3
            Contains part of the FBXO7 gene for F-box protein 7,
            complete sequence
          Length = 3539

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 114  aaaaaagaaaggcagttga 132
            |||||||||||||||||||
Sbjct: 2969 aaaaaagaaaggcagttga 2987
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     ttacatcagaacaacatca 52
              |||||||||||||||||||
Sbjct: 546148 ttacatcagaacaacatca 546130
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>emb|AJ414157.1| Yersinia pestis strain CO92 complete genome; segment 17/20
          Length = 216050

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 34     ttacatcagaacaacatca 52
              |||||||||||||||||||
Sbjct: 125963 ttacatcagaacaacatca 125981
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>emb|BX546447.8| Zebrafish DNA sequence from clone DKEY-3D18 in linkage group 17,
             complete sequence
          Length = 111358

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    attacacattacatcagaa 44
             |||||||||||||||||||
Sbjct: 11657 attacacattacatcagaa 11675
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>gb|AC145335.15| Pan troglodytes clone rp43-26k12, complete sequence
          Length = 208895

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 114    aaaaaagaaaggcagttga 132
              |||||||||||||||||||
Sbjct: 113994 aaaaaagaaaggcagttga 113976
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>gb|AC090348.4| Homo sapiens chromosome 18, clone RP11-834M2, complete sequence
          Length = 184119

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 111   accaaaaaagaaaggcagt 129
             |||||||||||||||||||
Sbjct: 74800 accaaaaaagaaaggcagt 74818
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 107     aggaaccaaaaaagaaagg 125
               |||||||||||||||||||
Sbjct: 1135008 aggaaccaaaaaagaaagg 1135026
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>gb|AY566839.1| Macaca fascicularis MOG alpha-3 mRNA, complete cds, alternatively
           spliced
          Length = 675

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 107 aggaaccaaaaaagaaagg 125
           |||||||||||||||||||
Sbjct: 623 aggaaccaaaaaagaaagg 641
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>gb|AY566842.1| Macaca fascicularis MOG alpha-6 mRNA, complete cds, alternatively
           spliced
          Length = 327

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 107 aggaaccaaaaaagaaagg 125
           |||||||||||||||||||
Sbjct: 275 aggaaccaaaaaagaaagg 293
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>gb|AY566845.1| Macaca fascicularis MOG beta-3 mRNA, complete cds, alternatively
           spliced
          Length = 690

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 107 aggaaccaaaaaagaaagg 125
           |||||||||||||||||||
Sbjct: 623 aggaaccaaaaaagaaagg 641
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>gb|AC159214.2| Pan troglodytes BAC clone CH251-522M3 from chromosome unknown, complete
              sequence
          Length = 190101

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 114    aaaaaagaaaggcagttga 132
              |||||||||||||||||||
Sbjct: 149876 aaaaaagaaaggcagttga 149858
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>gb|AC148698.1| Macaca mulatta Major Histocompatibility Complex BAC MMU268P23, complete
             sequence
          Length = 185838

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 107   aggaaccaaaaaagaaagg 125
             |||||||||||||||||||
Sbjct: 96046 aggaaccaaaaaagaaagg 96064
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>gb|AC084591.1|CBRG42B20 Caenorhabditis briggsae cosmid G42B20, complete sequence
          Length = 43204

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   ggaaccaaaaaagaaaggc 126
             |||||||||||||||||||
Sbjct: 34745 ggaaccaaaaaagaaaggc 34727
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>gb|AC093740.2| Homo sapiens BAC clone RP11-24G22 from 2, complete sequence
          Length = 168006

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 160   tatctagcttattcccctt 178
             |||||||||||||||||||
Sbjct: 73419 tatctagcttattcccctt 73437
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>emb|AL928960.25| Mouse DNA sequence from clone RP23-413K16 on chromosome 2, complete
            sequence
          Length = 195733

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 166  gcttattcccctttctactatgt 188
            |||||||||||||||| ||||||
Sbjct: 9891 gcttattcccctttcttctatgt 9869
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>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 12      gaatcagatttaacattac 30
               |||||||||||||||||||
Sbjct: 2769197 gaatcagatttaacattac 2769215
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 86      acattcagcgacgactacc 104
               |||||||||||||||||||
Sbjct: 3249506 acattcagcgacgactacc 3249488
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>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     atcagattatgtctgctta 67
              |||||||||||||||||||
Sbjct: 581677 atcagattatgtctgctta 581659


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,144,852
Number of Sequences: 3902068
Number of extensions: 2144852
Number of successful extensions: 156002
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 155724
Number of HSP's gapped (non-prelim): 278
length of query: 193
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 171
effective length of database: 17,147,199,772
effective search space: 2932171161012
effective search space used: 2932171161012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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