ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHI1_APHAL (P32470) Chitinase 1 precursor (EC 3.2.1.14) 29 3.5
2RFCS_PYRAB (Q9V2G4) Replication factor C small subunit (RFC smal... 28 7.7

>CHI1_APHAL (P32470) Chitinase 1 precursor (EC 3.2.1.14)|
          Length = 423

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 1   KQENRRASINYQAGGVSSSTINFPEDLNSALTRRCIGKSGI 123
           K++NR   +    GG + ST NFP   +SA TR+   +S +
Sbjct: 116 KKQNRNMKVMLSIGGWTWST-NFPAAASSAATRKTFAQSAV 155



to top

>RFCS_PYRAB (Q9V2G4) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit) (PabRFC small subunit)
           [Contains: Pab RFC-1 intein; Pab RFC-2 intein]
          Length = 1437

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 128 FKPQLSLQYNNNYYCIKELKHYLRSGKMGH 217
           ++PQ   +     + +K LKHY+++G M H
Sbjct: 21  YRPQKLEEIVGQEHIVKRLKHYVKTGSMPH 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,832,295
Number of Sequences: 219361
Number of extensions: 659968
Number of successful extensions: 1581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top