ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl39h07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence Length = 836 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||| | ||| || || |||||||| ||||||||||||||||||||||| Sbjct: 779 cggaagtaaatagacacaagcgggatgtcgacgtcattgtcatcgtcatcctc 727
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||||| ||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 312156 cggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctc 312208
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||||| ||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 295054 cggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctc 295106
>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full insert sequence Length = 3724 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||||| ||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 3463 cggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctc 3411
>dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I12, full insert sequence Length = 1533 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||||| ||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 1356 cggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctc 1304
>dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C03, full insert sequence Length = 1510 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||||| ||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 1247 cggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctc 1195
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||||| ||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 295054 cggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctc 295106
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||||| ||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 312156 cggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctc 312208
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||||| ||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 9939 cggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctc 9887
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||||| ||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 45207 cggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctc 45259
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||||| ||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 2372 cggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctc 2424
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds Length = 3586 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 ||||||||||| || || ||||||||||| || |||||||| ||||||||||| Sbjct: 3334 cggaagtagaccgacacaagtgggatgtcgacatcattgtcgtcgtcatcctc 3282
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3695 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Minus Query: 251 cggaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 ||||||||||| || || ||||||||||| || || ||||| ||||||||||| Sbjct: 3429 cggaagtagaccgacacaagtgggatgtcgacatcgttgtcgtcgtcatcctc 3377
>emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiquitin activating enzyme E1 (ORF), clone CanUBC-1 Length = 807 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Minus Query: 272 gggatgtcaacgtcattgtcatcgtcatcctc 303 ||||| |||| ||||||||||||||||||||| Sbjct: 499 gggatatcaatgtcattgtcatcgtcatcctc 468
>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110 (ATUBA1) mRNA, complete cds Length = 3626 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Minus Query: 253 gaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||| ||| ||||| || || || |||||||||||||| |||||||| Sbjct: 3360 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctc 3310
>ref|XM_710731.1| Candida albicans SC5314 hypothetical protein (CaO19_10361), mRNA Length = 2148 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Plus Query: 278 tcaacgtcattgtcatcgtcatc 300 ||||||||||||||||||||||| Sbjct: 1177 tcaacgtcattgtcatcgtcatc 1199
>ref|XM_710680.1| Candida albicans SC5314 hypothetical protein (CaO19_2842), mRNA Length = 2133 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Plus Query: 278 tcaacgtcattgtcatcgtcatc 300 ||||||||||||||||||||||| Sbjct: 1150 tcaacgtcattgtcatcgtcatc 1172
>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete sequence Length = 83796 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Minus Query: 253 gaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||| ||| ||||| || || || |||||||||||||| |||||||| Sbjct: 53002 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctc 52952
>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds Length = 3561 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Minus Query: 253 gaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||| ||| ||||| || || || |||||||||||||| |||||||| Sbjct: 3321 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctc 3271
>dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin activating enzyme, complete cds, clone: RAFL22-01-B01 Length = 474 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Minus Query: 253 gaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||| ||| ||||| || || || |||||||||||||| |||||||| Sbjct: 208 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctc 158
>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds Length = 3243 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Minus Query: 253 gaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||| ||| ||||| || || || |||||||||||||| |||||||| Sbjct: 3237 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctc 3187
>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene, complete cds Length = 3346 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Minus Query: 253 gaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||| ||| ||||| || || || |||||||||||||| |||||||| Sbjct: 3334 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctc 3284
>emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL1ZD10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 646 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Minus Query: 253 gaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||| ||| ||||| || || || |||||||||||||| |||||||| Sbjct: 390 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctc 340
>emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH43ZE11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1375 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Minus Query: 253 gaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||| ||| ||||| || || || |||||||||||||| |||||||| Sbjct: 1167 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctc 1117
>emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH16ZF09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 930 Score = 46.1 bits (23), Expect = 0.064 Identities = 44/51 (86%) Strand = Plus / Minus Query: 253 gaagtagacagatacgagtgggatgtcaacgtcattgtcatcgtcatcctc 303 |||||||| ||| ||||| || || || |||||||||||||| |||||||| Sbjct: 673 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctc 623
>emb|AL583824.16| Human DNA sequence from clone RP11-79M19 on chromosome 10 Contains part of the GPRK5 gene for G protein-coupled receptor kinase 5 (GRK5) and a novel gene, complete sequence Length = 55700 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 282 cgtcattgtcatcgtcatcctc 303 |||||||||||||||||||||| Sbjct: 10385 cgtcattgtcatcgtcatcctc 10406
>emb|AL627182.22| Mouse DNA sequence from clone RP23-32K12 on chromosome 4, complete sequence Length = 241562 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 274 gatgtcaacgtcattgtcatcgtcatcctc 303 |||||||||||||||||| || |||||||| Sbjct: 156105 gatgtcaacgtcattgtcctcatcatcctc 156134
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 cagaggggagcctgtcaacgg 253 ||||||||||||||||||||| Sbjct: 2835519 cagaggggagcctgtcaacgg 2835499
>gb|AC022522.2|AC022522 Arabidopsis thaliana chromosome I BAC T28K15 genomic sequence, complete sequence Length = 88643 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 ataataataactactactgta 173 ||||||||||||||||||||| Sbjct: 67458 ataataataactactactgta 67478
>gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete sequence Length = 123386 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 ataataataactactactgta 173 ||||||||||||||||||||| Sbjct: 9558 ataataataactactactgta 9578
>gb|AF000580.1|AF000580 Dictyostelium discoideum plasmid Ddp5, complete genome Length = 14955 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 276 tgtcaacgtcattgtcatcgtcatc 300 ||||||||||||||||| ||||||| Sbjct: 1030 tgtcaacgtcattgtcaacgtcatc 1006 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 276 tgtcaacgtcattgtcatcgtcatc 300 |||||||||||| |||||||||||| Sbjct: 1018 tgtcaacgtcatcgtcatcgtcatc 994
>emb|BX004887.2| Zebrafish DNA sequence from clone CH211-150E4, complete sequence Length = 186834 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 ataataataactactactgtataaa 177 |||||||||| |||||||||||||| Sbjct: 93212 ataataataaatactactgtataaa 93188
>emb|BX897750.11| Zebrafish DNA sequence from clone DKEY-278N18, complete sequence Length = 182033 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 acagtataataataactacta 168 ||||||||||||||||||||| Sbjct: 38752 acagtataataataactacta 38772
>gb|AC135667.5| Mus musculus BAC clone RP24-536G18 from chromosome 13, complete sequence Length = 166185 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 gtcaacgtcattgtcatcgtcatc 300 |||| ||||||||||||||||||| Sbjct: 84338 gtcatcgtcattgtcatcgtcatc 84361
>ref|XM_640831.1| Dictyostelium discoideum putative protein tyrosine kinase (DDB0191503), partial mRNA Length = 9555 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tataataataactactactg 171 |||||||||||||||||||| Sbjct: 742 tataataataactactactg 723
>gb|AC154392.18| Mus musculus chromosome 1, clone RP23-413K6, complete sequence Length = 205076 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 gaggatctgaactcagctct 92 |||||||||||||||||||| Sbjct: 105143 gaggatctgaactcagctct 105124
>gb|AE017139.1| Yersinia pestis biovar Medievalis str. 91001 section 13 of 16 of the complete genome Length = 294253 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 aacgtcattgtcatcgtcat 299 |||||||||||||||||||| Sbjct: 212434 aacgtcattgtcatcgtcat 212453
>ref|XM_365395.1| Magnaporthe grisea 70-15 hypothetical protein (MG02097.4) partial mRNA Length = 2472 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 acgtcattgtcatcgtcatc 300 |||||||||||||||||||| Sbjct: 2084 acgtcattgtcatcgtcatc 2065
>ref|XM_461467.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F27489g) partial mRNA Length = 2595 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 gtcaacgtcattgtcatcgtcatc 300 |||| ||||||||||||||||||| Sbjct: 1041 gtcatcgtcattgtcatcgtcatc 1018
>gb|AC140247.3| Mus musculus BAC clone RP23-469I15 from chromosome 9, complete sequence Length = 189336 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 acgtcattgtcatcgtcatc 300 |||||||||||||||||||| Sbjct: 19542 acgtcattgtcatcgtcatc 19561
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 aacgtcattgtcatcgtcat 299 |||||||||||||||||||| Sbjct: 4327569 aacgtcattgtcatcgtcat 4327550
>ref|XM_857646.1| PREDICTED: Canis familiaris similar to PGC-1 related co-activator, transcript variant 2 (LOC477805), mRNA Length = 4914 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 101 ggtgcattggaaagtcagggatattgct 128 ||||||| |||||||| ||||||||||| Sbjct: 472 ggtgcataggaaagtctgggatattgct 445
>ref|XM_534998.2| PREDICTED: Canis familiaris similar to PGC-1 related co-activator, transcript variant 1 (LOC477805), mRNA Length = 5283 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 101 ggtgcattggaaagtcagggatattgct 128 ||||||| |||||||| ||||||||||| Sbjct: 835 ggtgcataggaaagtctgggatattgct 808
>gb|AC116592.5| Mus musculus BAC clone RP24-90K3 from 2, complete sequence Length = 238657 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 gtcaacgtcattgtcatcgtcatc 300 |||| ||||||||||||||||||| Sbjct: 129557 gtcatcgtcattgtcatcgtcatc 129580
>emb|AL355384.6| Human DNA sequence from clone RP11-626C11 on chromosome 10 Contains a CpG island, complete sequence Length = 159305 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ggtgcattggaaagtcaggg 120 |||||||||||||||||||| Sbjct: 20449 ggtgcattggaaagtcaggg 20468
>gb|U58632.2|TNU58632 Thermotoga neapolitana xylan catabolic cluster and associated ABC transport system, complete sequence Length = 12298 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cactatcttcgttctggaaa 207 |||||||||||||||||||| Sbjct: 6190 cactatcttcgttctggaaa 6171
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 gtcaacgtcattgtcatcgtcatc 300 |||| ||||||||||||||||||| Sbjct: 2188770 gtcatcgtcattgtcatcgtcatc 2188793
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 aacgtcattgtcatcgtcat 299 |||||||||||||||||||| Sbjct: 4518728 aacgtcattgtcatcgtcat 4518747
>emb|AL929352.1|PFA929352 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4 Length = 313050 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 tgtcaacgtcattgtcatcgtcat 299 ||||| |||||||||||||||||| Sbjct: 66439 tgtcatcgtcattgtcatcgtcat 66416
>emb|AJ414159.1| Yersinia pestis strain CO92 complete genome; segment 19/20 Length = 199050 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 aacgtcattgtcatcgtcat 299 |||||||||||||||||||| Sbjct: 190514 aacgtcattgtcatcgtcat 190533
>gb|AC163436.3| Mus musculus chromosome 1, clone RP23-102H12, complete sequence Length = 198253 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tcattgtcatcgtcatcctc 303 |||||||||||||||||||| Sbjct: 123957 tcattgtcatcgtcatcctc 123938
>gb|AC090541.4| Homo sapiens chromosome 8, clone RP11-1105O14, complete sequence Length = 167319 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 caagttcaacaataaatttt 69 |||||||||||||||||||| Sbjct: 85537 caagttcaacaataaatttt 85556
>emb|BX276181.15| Zebrafish DNA sequence from clone CH211-247O20 in linkage group 5, complete sequence Length = 154012 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gtttacagtataataataactact 167 ||||||||||| |||||||||||| Sbjct: 97427 gtttacagtattataataactact 97404
>dbj|AB077116.1| Prunus persica mRNA, microsatellite marker M13b Length = 615 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 gtcaacgtcattgtcatcgtcatc 300 ||||||||||| |||||||||||| Sbjct: 69 gtcaacgtcatcgtcatcgtcatc 92
>gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, complete sequence Length = 166114 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 tgtataaaggaactcaaaca 189 |||||||||||||||||||| Sbjct: 9690 tgtataaaggaactcaaaca 9709
>gb|AC024993.6| Homo sapiens chromosome 8, clone RP11-262B3, complete sequence Length = 141756 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 caagttcaacaataaatttt 69 |||||||||||||||||||| Sbjct: 100382 caagttcaacaataaatttt 100363
>gb|AC016031.6| Homo sapiens, clone RP11-12J8, complete sequence Length = 139690 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tgtataaaggaactcaaaca 189 |||||||||||||||||||| Sbjct: 61125 tgtataaaggaactcaaaca 61106
>gb|AC157477.2| Mus musculus BAC clone RP24-141A7 from chromosome 9, complete sequence Length = 163557 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 acgtcattgtcatcgtcatc 300 |||||||||||||||||||| Sbjct: 159041 acgtcattgtcatcgtcatc 159060
>gb|AY170918.1| Dictyostelium discoideum pats1 gene, partial cds Length = 8892 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tataataataactactactg 171 |||||||||||||||||||| Sbjct: 265 tataataataactactactg 246
>gb|AC097231.3| Sus scrofa clone RP44-504L18, complete sequence Length = 161823 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tcaagttcaacaataaattt 68 |||||||||||||||||||| Sbjct: 27526 tcaagttcaacaataaattt 27507
>gb|AC102900.12| Mus musculus chromosome 1, clone RP24-315J13, complete sequence Length = 192545 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tcattgtcatcgtcatcctc 303 |||||||||||||||||||| Sbjct: 89486 tcattgtcatcgtcatcctc 89467
>emb|AL845529.10| Mouse DNA sequence from clone RP23-276D17 on chromosome 2, complete sequence Length = 166971 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 gtcaacgtcattgtcatcgtcatc 300 |||| ||||||||||||||||||| Sbjct: 90493 gtcatcgtcattgtcatcgtcatc 90470 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,867,391 Number of Sequences: 3902068 Number of extensions: 2867391 Number of successful extensions: 56938 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56740 Number of HSP's gapped (non-prelim): 198 length of query: 303 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 281 effective length of database: 17,147,199,772 effective search space: 4818363135932 effective search space used: 4818363135932 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
