ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF411229.2| Hordeum vulgare gigantea-like protein mRNA, parti... 874 0.0
2gb|AY740524.1| Hordeum vulgare subsp. vulgare gigantea-like prot... 751 0.0
3gb|AF543844.1| Triticum aestivum gigantea (TaGI1) mRNA, complete... 450 e-123
4gb|AY679114.1| Triticum aestivum gigantea 2 (TaGI2) mRNA, comple... 305 7e-80
5gb|AY740523.1| Hordeum vulgare gigantea-like protein (GI) mRNA, ... 295 6e-77
6gb|AY679115.1| Triticum aestivum gigantea 3 (TaGI3) mRNA, comple... 289 4e-75
7ref|XM_550413.1| Oryza sativa (japonica cultivar-group), mRNA 141 2e-30
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
9dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
10dbj|AK072166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
11dbj|AK067038.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
12ref|XM_550414.1| Oryza sativa (japonica cultivar-group), mRNA 125 1e-25
13emb|AJ133787.1|OSA133787 Oryza sativa mRNA for gigantea homologu... 111 2e-21
14gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 44 0.39
15gb|AC172863.1| Brassica rapa subsp. pekinensis clone KBrB070M24,... 42 1.5
16gb|AC117757.23| Mus musculus chromosome 1, clone RP24-420I4, com... 40 6.1
17ref|NM_017183.1| Rattus norvegicus interleukin 8 receptor, beta ... 40 6.1
18gb|AF030694.2| Plasmodium falciparum strain Dd2 heat shock prote... 40 6.1
19gb|AC113473.20| Mus musculus chromosome 1, clone RP23-280F6, com... 40 6.1
20ref|NM_009909.3| Mus musculus interleukin 8 receptor, beta (Il8r... 40 6.1
21gb|AC125101.3| Mus musculus BAC clone RP24-207F9 from chromosome... 40 6.1
22gb|BC051677.1| Mus musculus interleukin 8 receptor, beta, mRNA (... 40 6.1
23gb|AF030691.1| Plasmodium falciparum strain 7G8 CG9 (cg9) and CG... 40 6.1
24gb|AF030690.1| Plasmodium falciparum strain HB3 CG9 (cg9) and CG... 40 6.1
25gb|L26549.1|MUSIL8R Mus musculus interleukin 8 receptor gene, co... 40 6.1
26emb|X77797.1|RNIL8R R.norvegicus mRNA for interleukin-8 receptor 40 6.1
27dbj|AK158234.1| Mus musculus adult inner ear cDNA, RIKEN full-le... 40 6.1
28gb|AC154389.1| Mus musculus BAC clone RP23-2H9 from chromosome 1... 40 6.1
29gb|AF260819.1|AF260819 Plasmodium falciparum CG1 protein gene, c... 40 6.1
30gb|AC157017.3| Mus musculus 10 BAC RP24-559D16 (Roswell Park Can... 40 6.1
31gb|AC153966.4| Mus musculus 10 BAC RP24-357P6 (Roswell Park Canc... 40 6.1
32gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 ... 40 6.1
33dbj|D17630.1|MUSITLK8 Mus musculus IL-8R mRNA for interleukin-8 ... 40 6.1
34gb|U70988.1|RNU70988 Rattus norvegicus CXC chemokine receptor (C... 40 6.1
35gb|U31207.1|MMU31207 Mus musculus interleukin-8 receptor gene, c... 40 6.1
36gb|L13239.1|MUSIL8GROA Mouse IL8/gro-alpha receptor gene, comple... 40 6.1
37gb|L23637.1|MUSIL8RB Mouse interleukin-8 receptor type B (Il8rb)... 40 6.1
38dbj|D63584.1|RATGMGSAR Rat gene for gro/MGSA receptor, complete cds 40 6.1 
>gb|AF411229.2| Hordeum vulgare gigantea-like protein mRNA, partial cds
          Length = 2900

 Score =  874 bits (441), Expect = 0.0
 Identities = 441/441 (100%)
 Strand = Plus / Minus

                                                                        
Query: 13   tgacacgtcttcatttaacatagcggacatcttactgttacatcatgaatacaagttaca 72
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2875 tgacacgtcttcatttaacatagcggacatcttactgttacatcatgaatacaagttaca 2816

                                                                        
Query: 73   gcacaagcagttcaatatgcttgaacatctaacgtcagattgcaagttaaaatcacaccg 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2815 gcacaagcagttcaatatgcttgaacatctaacgtcagattgcaagttaaaatcacaccg 2756

                                                                        
Query: 133  cgggagcaaagctccgtatgattgggaacatcagctaatatacatcacatcatggggggc 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2755 cgggagcaaagctccgtatgattgggaacatcagctaatatacatcacatcatggggggc 2696

                                                                        
Query: 193  agactgggaatggaaagccatccttgagcaagggattaattagccatcctgctcgctgac 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2695 agactgggaatggaaagccatccttgagcaagggattaattagccatcctgctcgctgac 2636

                                                                        
Query: 253  catgcagcaactgctcgcaccaactgtcaagtgttgctgattgtcagcttcaaatatggc 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2635 catgcagcaactgctcgcaccaactgtcaagtgttgctgattgtcagcttcaaatatggc 2576

                                                                        
Query: 313  cttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcgaggg 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2575 cttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcgaggg 2516

                                                                        
Query: 373  tcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatccgctt 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 tcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatccgctt 2456

                                 
Query: 433  gccagttcaccgtgtttgctg 453
            |||||||||||||||||||||
Sbjct: 2455 gccagttcaccgtgtttgctg 2435
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>gb|AY740524.1| Hordeum vulgare subsp. vulgare gigantea-like protein (GI) gene,
            complete cds
          Length = 7682

 Score =  751 bits (379), Expect = 0.0
 Identities = 382/383 (99%)
 Strand = Plus / Minus

                                                                        
Query: 71   cagcacaagcagttcaatatgcttgaacatctaacgtcagattgcaagttaaaatcacac 130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681 cagcacaagcagttcaatatgcttgaacatctaacgtcagattgcaagttaaaatcacac 7622

                                                                        
Query: 131  cgcgggagcaaagctccgtatgattgggaacatcagctaatatacatcacatcatggggg 190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7621 cgcgggagcaaagctccgtatgattgggaacatcagctaatatacatcacatcatggggg 7562

                                                                        
Query: 191  gcagactgggaatggaaagccatccttgagcaagggattaattagccatcctgctcgctg 250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7561 gcagactgggaatggaaagccatccttgagcaagggattaattagccatcctgctcgctg 7502

                                                                        
Query: 251  accatgcagcaactgctcgcaccaactgtcaagtgttgctgattgtcagcttcaaatatg 310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7501 accatgcagcaactgctcgcaccaactgtcaagtgttgctgattgtcagcttcaaatatg 7442

                                                                        
Query: 311  gccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcgag 370
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7441 gccttgtcagcaaggaagggggcagcccagctcgttagcagcagcggtgaggaaggcgag 7382

                                                                        
Query: 371  ggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatccgc 430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7381 ggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatccgc 7322

                                   
Query: 431  ttgccagttcaccgtgtttgctg 453
            |||||||||||||||||||||||
Sbjct: 7321 ttgccagttcaccgtgtttgctg 7299
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>gb|AF543844.1| Triticum aestivum gigantea (TaGI1) mRNA, complete cds
          Length = 4012

 Score =  450 bits (227), Expect = e-123
 Identities = 242/247 (97%)
 Strand = Plus / Minus

                                                                        
Query: 207  aagccatccttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgc 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3775 aagccatccttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgc 3716

                                                                        
Query: 267  tcgcaccaactgtcaagtgttgctgattgtcagcttcaaatatggccttgtcagcaagga 326
            |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 3715 tcgcgccaactgtcaagtgtcgctgattgtcagctccaaatatggccttgtcagcaagga 3656

                                                                        
Query: 327  agggggcagccgagctcgttagcagcagcggtgaggaaggcgagggtcatcccggtggca 386
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 3655 agggggcagccgagctcgttagccgcagcggtgaggaaggcgagggtcatcccggtggcg 3596

                                                                        
Query: 387  cggcggctgcgggcttcccagtctatacatctctcgacatccgcttgccagttcaccgtg 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3595 cggcggctgcgggcttcccagtctatacatctctcgacatccgcttgccagttcaccgtg 3536

                   
Query: 447  tttgctg 453
            |||||||
Sbjct: 3535 tttgctg 3529



 Score =  285 bits (144), Expect = 6e-74
 Identities = 166/172 (96%), Gaps = 1/172 (0%)
 Strand = Plus / Minus

                                                                        
Query: 9    aaaatgacacgtcttcatttaacatagcggacatcttactgttacatcatgaatacaagt 68
            ||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 3983 aaaatgacatgtcttcatttaccatagcggacatctttcggttacatcatgaatacaagt 3924

                                                                        
Query: 69   tacagcacaagcagtt-caatatgcttgaacatctaacgtcagattgcaagttaaaatca 127
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3923 tacagcacaagcagtttcaatatgcttgaacatctaacgtcagattgcaagttaaaatca 3864

                                                                
Query: 128  caccgcgggagcaaagctccgtatgattgggaacatcagctaatatacatca 179
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3863 caccgggggagcaaagctccgtatgattgggaacatcagctaatatacatca 3812
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>gb|AY679114.1| Triticum aestivum gigantea 2 (TaGI2) mRNA, complete cds
          Length = 3543

 Score =  305 bits (154), Expect = 7e-80
 Identities = 163/166 (98%)
 Strand = Plus / Minus

                                                                        
Query: 288  gctgattgtcagcttcaaatatggccttgtcagcaaggaagggggcagccgagctcgtta 347
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3530 gctgattgtcagctccaaatatggccttgtcagcaaggaagggggcagccgagctcgtta 3471

                                                                        
Query: 348  gcagcagcggtgaggaaggcgagggtcatcccggtggcacggcggctgcgggcttcccag 407
            || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3470 gccgcagcggtgaggaaggcgagggtcatcccggtggcgcggcggctgcgggcttcccag 3411

                                                          
Query: 408  tctatacatctctcgacatccgcttgccagttcaccgtgtttgctg 453
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410 tctatacatctctcgacatccgcttgccagttcaccgtgtttgctg 3365
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>gb|AY740523.1| Hordeum vulgare gigantea-like protein (GI) mRNA, complete cds
          Length = 3480

 Score =  295 bits (149), Expect = 6e-77
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                        
Query: 305  aatatggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaa 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3480 aatatggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaa 3421

                                                                        
Query: 365  ggcgagggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgac 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3420 ggcgagggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgac 3361

                                         
Query: 425  atccgcttgccagttcaccgtgtttgctg 453
            |||||||||||||||||||||||||||||
Sbjct: 3360 atccgcttgccagttcaccgtgtttgctg 3332
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>gb|AY679115.1| Triticum aestivum gigantea 3 (TaGI3) mRNA, complete cds
          Length = 3548

 Score =  289 bits (146), Expect = 4e-75
 Identities = 161/166 (96%)
 Strand = Plus / Minus

                                                                        
Query: 288  gctgattgtcagcttcaaatatggccttgtcagcaaggaagggggcagccgagctcgtta 347
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3536 gctgattgtcagctccaaatatggccttgtcagcaaggaagggggcagccgagctcgtta 3477

                                                                        
Query: 348  gcagcagcggtgaggaaggcgagggtcatcccggtggcacggcggctgcgggcttcccag 407
            || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 3476 gccgcagcggtgaggaaggcgagggtcatcccggtggcgcgccggctgcgggcttcccag 3417

                                                          
Query: 408  tctatacatctctcgacatccgcttgccagttcaccgtgtttgctg 453
            |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3416 tctatacatctctccacatccgcttgccagttcaccgtgtttgctg 3371
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>ref|XM_550413.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4184

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Minus

                                                                        
Query: 309  tggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcg 368
            ||||||||||||||||  || |||||||||||||| || || || |||||||||||||||
Sbjct: 3928 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 3869

                                                                        
Query: 369  agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 428
            || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 3868 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 3809

                       
Query: 429  gcttgccagtt 439
            |||||||||||
Sbjct: 3808 gcttgccagtt 3798



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 61   atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 110
            |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 4155 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 4105



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  ttgggaacatcagctaatat 173
            ||||||||||||||||||||
Sbjct: 4041 ttgggaacatcagctaatat 4022
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Plus

                                                                           
Query: 309     tggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcg 368
               ||||||||||||||||  || |||||||||||||| || || || |||||||||||||||
Sbjct: 4328717 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 4328776

                                                                           
Query: 369     agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 428
               || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 4328777 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 4328836

                          
Query: 429     gcttgccagtt 439
               |||||||||||
Sbjct: 4328837 gcttgccagtt 4328847



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                  
Query: 61      atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 110
               |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 4328490 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 4328540



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 154     ttgggaacatcagctaatat 173
               ||||||||||||||||||||
Sbjct: 4328604 ttgggaacatcagctaatat 4328623
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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0666G04
          Length = 141983

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Plus

                                                                          
Query: 309    tggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcg 368
              ||||||||||||||||  || |||||||||||||| || || || |||||||||||||||
Sbjct: 108487 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 108546

                                                                          
Query: 369    agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 428
              || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 108547 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 108606

                         
Query: 429    gcttgccagtt 439
              |||||||||||
Sbjct: 108607 gcttgccagtt 108617



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                 
Query: 61     atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 110
              |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 108260 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 108310



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    ttgggaacatcagctaatat 173
              ||||||||||||||||||||
Sbjct: 108374 ttgggaacatcagctaatat 108393
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>dbj|AK072166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K20, full
            insert sequence
          Length = 4252

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Minus

                                                                        
Query: 309  tggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcg 368
            ||||||||||||||||  || |||||||||||||| || || || |||||||||||||||
Sbjct: 3897 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 3838

                                                                        
Query: 369  agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 428
            || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 3837 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 3778

                       
Query: 429  gcttgccagtt 439
            |||||||||||
Sbjct: 3777 gcttgccagtt 3767



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 61   atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 110
            |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 4124 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 4074



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  ttgggaacatcagctaatat 173
            ||||||||||||||||||||
Sbjct: 4010 ttgggaacatcagctaatat 3991
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>dbj|AK067038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091I22, full
            insert sequence
          Length = 4185

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Minus

                                                                        
Query: 309  tggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcg 368
            ||||||||||||||||  || |||||||||||||| || || || |||||||||||||||
Sbjct: 3928 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 3869

                                                                        
Query: 369  agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 428
            || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 3868 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 3809

                       
Query: 429  gcttgccagtt 439
            |||||||||||
Sbjct: 3808 gcttgccagtt 3798



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 61   atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 110
            |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 4155 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 4105



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  ttgggaacatcagctaatat 173
            ||||||||||||||||||||
Sbjct: 4041 ttgggaacatcagctaatat 4022
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>ref|XM_550414.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 786

 Score =  125 bits (63), Expect = 1e-25
 Identities = 108/123 (87%)
 Strand = Plus / Minus

                                                                       
Query: 317 tcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcgagggtcat 376
           ||||||||  || |||||||||||||| || || || ||||||||||||||||| |||| 
Sbjct: 786 tcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcgagcgtcag 727

                                                                       
Query: 377 cccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatccgcttgcca 436
           ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 726 cccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcggcttgcca 667

              
Query: 437 gtt 439
           |||
Sbjct: 666 gtt 664
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>emb|AJ133787.1|OSA133787 Oryza sativa mRNA for gigantea homologue, partial
          Length = 2931

 Score =  111 bits (56), Expect = 2e-21
 Identities = 109/126 (86%), Gaps = 3/126 (2%)
 Strand = Plus / Minus

                                                                        
Query: 314  ttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcgagggt 373
            |||||||||||  || |||||||||||||| ||    || ||||||||||||||||| ||
Sbjct: 2931 ttgtcagcaagtgagtgggcagccgagctcctt---cgccgcggtgaggaaggcgagcgt 2875

                                                                        
Query: 374  catcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatccgcttg 433
            || ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| |||||
Sbjct: 2874 cagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcggcttg 2815

                  
Query: 434  ccagtt 439
            ||||||
Sbjct: 2814 ccagtt 2809
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 248     ctgaccatgcagcaactgctcg 269
               ||||||||||||||||||||||
Sbjct: 2364775 ctgaccatgcagcaactgctcg 2364754
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>gb|AC172863.1| Brassica rapa subsp. pekinensis clone KBrB070M24, complete sequence
          Length = 97697

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 63    acaagttacagcacaagcagttcaa 87
             |||||| ||||||||||||||||||
Sbjct: 38227 acaagtcacagcacaagcagttcaa 38251
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>gb|AC117757.23| Mus musculus chromosome 1, clone RP24-420I4, complete sequence
          Length = 183087

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    tatggccttgtcagcaagga 326
              ||||||||||||||||||||
Sbjct: 165426 tatggccttgtcagcaagga 165445
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>ref|NM_017183.1| Rattus norvegicus interleukin 8 receptor, beta (Il8rb), mRNA
          Length = 1324

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  tatggccttgtcagcaagga 326
            ||||||||||||||||||||
Sbjct: 1122 tatggccttgtcagcaagga 1141
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>gb|AF030694.2| Plasmodium falciparum strain Dd2 heat shock protein 86 (HSP86), O1
             (o1), O3 (o3), O2 (o2), CG8 (cg8), CG4 (cg4), CG3 (cg3),
             putative chloroquine resistance transporter (crt), CG9
             (cg9), CG1 (cg1), CG6 (cg6), CG2 (cg2), and CG7 (cg7)
             genes, complete cds
          Length = 47573

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   tgggaacatcagctaatata 174
             ||||||||||||||||||||
Sbjct: 30343 tgggaacatcagctaatata 30362
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>gb|AC113473.20| Mus musculus chromosome 1, clone RP23-280F6, complete sequence
          Length = 221025

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   tatggccttgtcagcaagga 326
             ||||||||||||||||||||
Sbjct: 68557 tatggccttgtcagcaagga 68576
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>ref|NM_009909.3| Mus musculus interleukin 8 receptor, beta (Il8rb), mRNA
          Length = 3043

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  tatggccttgtcagcaagga 326
            ||||||||||||||||||||
Sbjct: 1136 tatggccttgtcagcaagga 1155
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>gb|AC125101.3| Mus musculus BAC clone RP24-207F9 from chromosome 19, complete sequence
          Length = 162162

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    tgaatacaagttacagcaca 77
             ||||||||||||||||||||
Sbjct: 22393 tgaatacaagttacagcaca 22412
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>gb|BC051677.1| Mus musculus interleukin 8 receptor, beta, mRNA (cDNA clone MGC:60615
            IMAGE:30023687), complete cds
          Length = 2842

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  tatggccttgtcagcaagga 326
            ||||||||||||||||||||
Sbjct: 1109 tatggccttgtcagcaagga 1128
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>gb|AF030691.1| Plasmodium falciparum strain 7G8 CG9 (cg9) and CG1 (cg1) genes,
            complete cds
          Length = 4005

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 155  tgggaacatcagctaatata 174
            ||||||||||||||||||||
Sbjct: 2118 tgggaacatcagctaatata 2137
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>gb|AF030690.1| Plasmodium falciparum strain HB3 CG9 (cg9) and CG1 (cg1) genes,
            complete cds
          Length = 4005

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 155  tgggaacatcagctaatata 174
            ||||||||||||||||||||
Sbjct: 2140 tgggaacatcagctaatata 2159
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>gb|L26549.1|MUSIL8R Mus musculus interleukin 8 receptor gene, complete cds
          Length = 2333

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  tatggccttgtcagcaagga 326
            ||||||||||||||||||||
Sbjct: 2089 tatggccttgtcagcaagga 2108
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>emb|X77797.1|RNIL8R R.norvegicus mRNA for interleukin-8 receptor
          Length = 1324

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  tatggccttgtcagcaagga 326
            ||||||||||||||||||||
Sbjct: 1122 tatggccttgtcagcaagga 1141
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>dbj|AK158234.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
            library, clone:F930044K23 product:interleukin 8 receptor,
            beta, full insert sequence
          Length = 2220

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  tatggccttgtcagcaagga 326
            ||||||||||||||||||||
Sbjct: 1142 tatggccttgtcagcaagga 1161
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>gb|AC154389.1| Mus musculus BAC clone RP23-2H9 from chromosome 13, complete sequence
          Length = 215256

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 211    catccttgagcaagggattaattagccatcct 242
              ||||||| || |||||||| ||||||||||||
Sbjct: 139265 catccttaagtaagggattcattagccatcct 139296
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>gb|AF260819.1|AF260819 Plasmodium falciparum CG1 protein gene, complete cds
          Length = 2820

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 155  tgggaacatcagctaatata 174
            ||||||||||||||||||||
Sbjct: 1001 tgggaacatcagctaatata 1020
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>gb|AC157017.3| Mus musculus 10 BAC RP24-559D16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 170093

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    aactgtcaagtgttgctgat 293
              ||||||||||||||||||||
Sbjct: 141816 aactgtcaagtgttgctgat 141835
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>gb|AC153966.4| Mus musculus 10 BAC RP24-357P6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 155839

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   aactgtcaagtgttgctgat 293
             ||||||||||||||||||||
Sbjct: 67697 aactgtcaagtgttgctgat 67716
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>gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 of 73 of the complete
             sequence
          Length = 585533

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    agcacaagcagttcaatatg 91
             ||||||||||||||||||||
Sbjct: 12103 agcacaagcagttcaatatg 12084
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>dbj|D17630.1|MUSITLK8 Mus musculus IL-8R mRNA for interleukin-8 receptor, complete cds
          Length = 1858

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  tatggccttgtcagcaagga 326
            ||||||||||||||||||||
Sbjct: 1132 tatggccttgtcagcaagga 1151
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>gb|U70988.1|RNU70988 Rattus norvegicus CXC chemokine receptor (CXCR2) gene, complete cds
          Length = 1269

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  tatggccttgtcagcaagga 326
            ||||||||||||||||||||
Sbjct: 1152 tatggccttgtcagcaagga 1171
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>gb|U31207.1|MMU31207 Mus musculus interleukin-8 receptor gene, complete cds
          Length = 1961

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  tatggccttgtcagcaagga 326
            ||||||||||||||||||||
Sbjct: 1107 tatggccttgtcagcaagga 1126
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>gb|L13239.1|MUSIL8GROA Mouse IL8/gro-alpha receptor gene, complete cds
          Length = 1080

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  tatggccttgtcagcaagga 326
            ||||||||||||||||||||
Sbjct: 991  tatggccttgtcagcaagga 1010
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>gb|L23637.1|MUSIL8RB Mouse interleukin-8 receptor type B (Il8rb) gene, complete cds
          Length = 3450

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  tatggccttgtcagcaagga 326
            ||||||||||||||||||||
Sbjct: 2086 tatggccttgtcagcaagga 2105
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>dbj|D63584.1|RATGMGSAR Rat gene for gro/MGSA receptor, complete cds
          Length = 1460

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  tatggccttgtcagcaagga 326
            ||||||||||||||||||||
Sbjct: 1311 tatggccttgtcagcaagga 1330


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,435,089
Number of Sequences: 3902068
Number of extensions: 3435089
Number of successful extensions: 57948
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57838
Number of HSP's gapped (non-prelim): 104
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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