ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106499.1| Zea mays PCO082525 mRNA sequence 88 2e-14
2ref|XM_493854.1| Oryza sativa (japonica cultivar-group), mRNA 82 1e-12
3ref|XM_479630.1| Oryza sativa (japonica cultivar-group), mRNA 82 1e-12
4gb|AY359964.1| Oryza sativa (indica cultivar-group) pseudo-respo... 82 1e-12
5dbj|AB189043.1| Oryza sativa (indica cultivar-group) OsPRR73 mRN... 82 1e-12
6dbj|AB189040.1| Oryza sativa (japonica cultivar-group) OsPRR73 m... 82 1e-12
7dbj|AB189039.1| Oryza sativa (japonica cultivar-group) OsPRR37 m... 82 1e-12
8dbj|AK068603.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
9dbj|AK066112.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
10dbj|AB243681.1| Lemna paucicostata LpPRRH37 mRNA for pseudo-resp... 76 7e-11
11gb|AY109518.1| Zea mays CL18439_1 mRNA sequence 76 7e-11
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 70 4e-09
13gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genom... 70 4e-09
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
15dbj|AK121136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 4e-09
16dbj|AB243684.1| Lemna gibba LgPRRH37 mRNA for pseudo-response re... 68 2e-08
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
18dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
19gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 60 4e-06
20gb|AY970705.1| Hordeum vulgare subsp. spontaneum pseudo-response... 60 4e-06
21gb|AY970704.1| Hordeum vulgare subsp. vulgare cultivar Triumph p... 60 4e-06
22gb|AY970703.1| Hordeum vulgare cultivar Golden Promise pseudo-re... 60 4e-06
23gb|AY970702.1| Hordeum vulgare subsp. vulgare cultivar Optic pse... 60 4e-06
24gb|AY970701.1| Hordeum vulgare subsp. vulgare cultivar Igri pseu... 52 0.001
25dbj|AK059361.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
26emb|AL353646.9| Human DNA sequence from clone RP11-186A13 on chr... 42 0.96
27dbj|AB189041.1| Oryza sativa (japonica cultivar-group) OsPRR95 m... 42 0.96
28dbj|AK067728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.96
29dbj|AK067314.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.96
30gb|AC006442.1|AC006442 Homo sapiens, clone hRPK.7_A_1, complete ... 42 0.96
31gb|AC012626.10| Homo sapiens chromosome 16 clone CTD-2118O12, co... 40 3.8
32gb|AY132905.1| Escherichia fergusonii strain ATCC 35469 phosphor... 40 3.8
33gb|AY132899.1| Escherichia coli strain ECOR41 phosphoribosylamin... 40 3.8
34gb|AY132898.1| Escherichia coli strain ECOR40 phosphoribosylamin... 40 3.8
35gb|AY132896.1| Escherichia coli strain ECOR64 phosphoribosylamin... 40 3.8
36gb|AY132895.1| Escherichia coli strain ECOR62 phosphoribosylamin... 40 3.8
37gb|AY132894.1| Escherichia coli strain ECOR60 phosphoribosylamin... 40 3.8
38gb|AY132893.1| Escherichia coli strain ECOR59 phosphoribosylamin... 40 3.8
39gb|AC127421.3| Mus musculus BAC clone RP24-314F1 from chromosome... 40 3.8
40gb|AC116998.3| Mus musculus BAC clone RP23-16F6 from 18, complet... 40 3.8
41gb|AC136974.11| Medicago truncatula clone mth2-22e9, complete se... 40 3.8
42gb|CP000243.1| Escherichia coli UTI89, complete genome 40 3.8
43dbj|AB243683.1| Lemna paucicostata LpPRRH95 mRNA for pseudo-resp... 40 3.8
44dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
45gb|AC040173.5| Homo sapiens chromosome 16 clone RP11-65J21, comp... 40 3.8
46gb|AF293164.1|AF293164 Escherichia coli isolate ECOR59 phosphori... 40 3.8
47gb|AF293161.1|AF293161 Escherichia coli isolate ECOR40 phosphori... 40 3.8
48dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
49dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
50gb|AC149380.2| Phakopsora pachyrhizi clone JGIAFNA-5A6, complete... 40 3.8 
>gb|AY106499.1| Zea mays PCO082525 mRNA sequence
          Length = 544

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                       
Query: 192 atcttcttgtccagactgtcggacaaattgcccacggacacgtggccgctgctcggccag 251
           |||||||||  |||| ||||| ||||| || || ||||| |||||||||||||| || ||
Sbjct: 114 atcttcttgctcagattgtcgcacaaactgtcctcggacccgtggccgctgctcagcaag 55

                                                   
Query: 252 cctcttcctgctttggtatcgcacctttttcccgaagttc 291
           |||||||||||||||||| || |||||||| || ||||||
Sbjct: 54  cctcttcctgctttggtagcgaacctttttaccaaagttc 15
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>ref|XM_493854.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2925

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                        
Query: 179  cttggcctgcctcatcttcttgtccagactgtcggacaaattgcccacggacacgtggcc 238
            |||||||||||| |||||| |||||||| ||||| || |||||||| ||||  || || |
Sbjct: 2356 cttggcctgcctgatcttcctgtccagattgtcgcacgaattgcccgcggatccgagggc 2297

                                                                 
Query: 239  gctgctcggccagcctcttcctgctttggtatcgcacctttttcccgaagttc 291
            ||||||| |||| |||||| ||||| || || ||||||||||| || ||||||
Sbjct: 2296 gctgctcagccaacctctttctgctctgatagcgcaccttttttccaaagttc 2244



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 94   gggttttatttattgagcactctaatgtg 122
            |||||||||||||||||||||| ||||||
Sbjct: 2492 gggttttatttattgagcactccaatgtg 2464
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>ref|XM_479630.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3312

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                     
Query: 234  tggccgctgctcggccagcctcttcctgctttggtatcgcacctttttcccgaagtt 290
            |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct: 2613 tggccgctgctcggccagcctctttctgctctggtaccgcaccttttttccgaagtt 2557
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>gb|AY359964.1| Oryza sativa (indica cultivar-group) pseudo-response regulator
            protein mRNA, partial cds
          Length = 1923

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                     
Query: 234  tggccgctgctcggccagcctcttcctgctttggtatcgcacctttttcccgaagtt 290
            |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct: 1839 tggccgctgctcggccagcctctttctgctctggtaccgcaccttttttccgaagtt 1783
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>dbj|AB189043.1| Oryza sativa (indica cultivar-group) OsPRR73 mRNA for pseudo-response
            regulator 73, complete cds
          Length = 2304

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                        
Query: 179  cttggcctgcctcatcttcttgtccagactgtcggacaaattgcccacggacacgtggcc 238
            |||||||||||| |||||| |||||||| ||||| || |||||||| ||||  || || |
Sbjct: 2290 cttggcctgcctgatcttcctgtccagattgtcgcacgaattgcccgcggatccgagggc 2231

                                                                 
Query: 239  gctgctcggccagcctcttcctgctttggtatcgcacctttttcccgaagttc 291
            ||||||| |||| |||||| ||||| || || ||||||||||| || ||||||
Sbjct: 2230 gctgctcagccaacctctttctgctctgatagcgcaccttttttccaaagttc 2178
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>dbj|AB189040.1| Oryza sativa (japonica cultivar-group) OsPRR73 mRNA for
            pseudo-response regulator 73, complete cds
          Length = 2304

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                        
Query: 179  cttggcctgcctcatcttcttgtccagactgtcggacaaattgcccacggacacgtggcc 238
            |||||||||||| |||||| |||||||| ||||| || |||||||| ||||  || || |
Sbjct: 2290 cttggcctgcctgatcttcctgtccagattgtcgcacgaattgcccgcggatccgagggc 2231

                                                                 
Query: 239  gctgctcggccagcctcttcctgctttggtatcgcacctttttcccgaagttc 291
            ||||||| |||| |||||| ||||| || || ||||||||||| || ||||||
Sbjct: 2230 gctgctcagccaacctctttctgctctgatagcgcaccttttttccaaagttc 2178
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>dbj|AB189039.1| Oryza sativa (japonica cultivar-group) OsPRR37 mRNA for
            pseudo-response regulator 37, complete cds
          Length = 2229

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                     
Query: 234  tggccgctgctcggccagcctcttcctgctttggtatcgcacctttttcccgaagtt 290
            |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct: 2145 tggccgctgctcggccagcctctttctgctctggtaccgcaccttttttccgaagtt 2089
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>dbj|AK068603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157G11, full
           insert sequence
          Length = 1406

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 179 cttggcctgcctcatcttcttgtccagactgtcggacaaattgcccacggacacgtggcc 238
           |||||||||||| |||||| |||||||| ||||| || |||||||| ||||  || || |
Sbjct: 960 cttggcctgcctgatcttcctgtccagattgtcgcacgaattgcccgcggatccgagggc 901

                                                                
Query: 239 gctgctcggccagcctcttcctgctttggtatcgcacctttttcccgaagttc 291
           ||||||| |||| |||||| ||||| || || ||||||||||| || ||||||
Sbjct: 900 gctgctcagccaacctctttctgctctgatagcgcaccttttttccaaagttc 848



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 94   gggttttatttattgagcactctaatgtg 122
            |||||||||||||||||||||| ||||||
Sbjct: 1096 gggttttatttattgagcactccaatgtg 1068
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>dbj|AK066112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051N02, full
            insert sequence
          Length = 3312

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                     
Query: 234  tggccgctgctcggccagcctcttcctgctttggtatcgcacctttttcccgaagtt 290
            |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct: 2613 tggccgctgctcggccagcctctttctgctctggtaccgcaccttttttccgaagtt 2557
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>dbj|AB243681.1| Lemna paucicostata LpPRRH37 mRNA for pseudo-response regulator 37
            homologue, complete cds
          Length = 2387

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                        
Query: 217  aattgcccacggacacgtggccgctgctcggccagcctcttcctgctttggtatcgcacc 276
            |||||||| ||||  |||||||| ||||| |||||| |||||||||||||||| ||||||
Sbjct: 2016 aattgcccccggattcgtggccgttgctccgccagcttcttcctgctttggtaacgcacc 1957

                  
Query: 277  tttttc 282
            ||||||
Sbjct: 1956 tttttc 1951
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>gb|AY109518.1| Zea mays CL18439_1 mRNA sequence
          Length = 2089

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                        
Query: 192  atcttcttgtccagactgtcggacaaattgcccacggacacgtggccgctgctcggccag 251
            |||||||||  |||| ||||| ||||| || || ||||| |||||||||||||| || ||
Sbjct: 1533 atcttcttgctcagattgtcgcacaaactgtcctcggacccgtggccgctgctcagcaag 1474

                              
Query: 252  cctcttcctgctttggta 269
            ||||||||||||||||||
Sbjct: 1473 cctcttcctgctttggta 1456
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                           
Query: 179     cttggcctgcctcatcttcttgtccagactgtcggacaaattgcccacggacacgtggcc 238
               |||||||||||| |||||| |||||||| ||||| || |||||||| ||||  || || |
Sbjct: 9732097 cttggcctgcctgatcttcctgtccagattgtcgcacgaattgcccgcggatccgagggc 9732156

                                                      
Query: 239     gctgctcggccagcctcttcctgctttggtatcgcacct 277
               ||||||| |||| |||||| ||||| || || |||||||
Sbjct: 9732157 gctgctcagccaacctctttctgctctgatagcgcacct 9732195



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                            
Query: 94      gggttttatttattgagcactctaatgtg 122
               |||||||||||||||||||||| ||||||
Sbjct: 9731961 gggttttatttattgagcactccaatgtg 9731989
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>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete
              sequence
          Length = 165113

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                          
Query: 179    cttggcctgcctcatcttcttgtccagactgtcggacaaattgcccacggacacgtggcc 238
              |||||||||||| |||||| |||||||| ||||| || |||||||| ||||  || || |
Sbjct: 152996 cttggcctgcctgatcttcctgtccagattgtcgcacgaattgcccgcggatccgagggc 153055

                                                     
Query: 239    gctgctcggccagcctcttcctgctttggtatcgcacct 277
              ||||||| |||| |||||| ||||| || || |||||||
Sbjct: 153056 gctgctcagccaacctctttctgctctgatagcgcacct 153094



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 94     gggttttatttattgagcactctaatgtg 122
              |||||||||||||||||||||| ||||||
Sbjct: 152860 gggttttatttattgagcactccaatgtg 152888
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                           
Query: 179     cttggcctgcctcatcttcttgtccagactgtcggacaaattgcccacggacacgtggcc 238
               |||||||||||| |||||| |||||||| ||||| || |||||||| ||||  || || |
Sbjct: 9730218 cttggcctgcctgatcttcctgtccagattgtcgcacgaattgcccgcggatccgagggc 9730277

                                                      
Query: 239     gctgctcggccagcctcttcctgctttggtatcgcacct 277
               ||||||| |||| |||||| ||||| || || |||||||
Sbjct: 9730278 gctgctcagccaacctctttctgctctgatagcgcacct 9730316



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                            
Query: 94      gggttttatttattgagcactctaatgtg 122
               |||||||||||||||||||||| ||||||
Sbjct: 9730082 gggttttatttattgagcactccaatgtg 9730110
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>dbj|AK121136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E22, full
            insert sequence
          Length = 3875

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 83/99 (83%)
 Strand = Plus / Minus

                                                                        
Query: 179  cttggcctgcctcatcttcttgtccagactgtcggacaaattgcccacggacacgtggcc 238
            |||||||||||| |||||| |||||||| ||||| || |||||||| ||||  || || |
Sbjct: 3429 cttggcctgcctgatcttcctgtccagattgtcgcacgaattgcccgcggatccgagggc 3370

                                                   
Query: 239  gctgctcggccagcctcttcctgctttggtatcgcacct 277
            ||||||| |||| |||||| ||||| || || |||||||
Sbjct: 3369 gctgctcagccaacctctttctgctctgatagcgcacct 3331



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 94   gggttttatttattgagcactctaatgtg 122
            |||||||||||||||||||||| ||||||
Sbjct: 3565 gggttttatttattgagcactccaatgtg 3537
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>dbj|AB243684.1| Lemna gibba LgPRRH37 mRNA for pseudo-response regulator 37 homologue,
            complete cds
          Length = 2289

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                        
Query: 217  aattgcccacggacacgtggccgctgctcggccagcctcttcctgctttggtatcgcacc 276
            ||||| || |||| ||||||||| ||||| |||||| |||||||||||||||| || |||
Sbjct: 2008 aattgtccccggatacgtggccgttgctctgccagcttcttcctgctttggtagcggacc 1949

                  
Query: 277  tttttc 282
            ||||||
Sbjct: 1948 tttttc 1943
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 234      tggccgctgctcggccagcctcttcctgctttggtatcgcacct 277
                |||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 29574938 tggccgctgctcggccagcctctttctgctctggtaccgcacct 29574895
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>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0627E10
          Length = 163388

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                          
Query: 234    tggccgctgctcggccagcctcttcctgctttggtatcgcacct 277
              |||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 101610 tggccgctgctcggccagcctctttctgctctggtaccgcacct 101567
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>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 232   cgtggccgctgctcggccagcctcttcctgctttggtatcgcacct 277
             ||||| |||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 14264 cgtgggcgctgctcggccagccgcttcctgctctggtaacgcacct 14219
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>gb|AY970705.1| Hordeum vulgare subsp. spontaneum pseudo-response regulator PPD-H1
            (Ppd-H1) gene, complete cds
          Length = 3552

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 232  cgtggccgctgctcggccagcctcttcctgctttggtatcgcacct 277
            ||||| |||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 3473 cgtgggcgctgctcggccagccgcttcctgctctggtaacgcacct 3428
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>gb|AY970704.1| Hordeum vulgare subsp. vulgare cultivar Triumph pseudo-response
            regulator PPD-H1 (Ppd-H1) gene, complete cds
          Length = 3539

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 232  cgtggccgctgctcggccagcctcttcctgctttggtatcgcacct 277
            ||||| |||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 3460 cgtgggcgctgctcggccagccgcttcctgctctggtaacgcacct 3415
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>gb|AY970703.1| Hordeum vulgare cultivar Golden Promise pseudo-response regulator
            PPD-H1 (Ppd-H1) gene, complete cds
          Length = 3539

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 232  cgtggccgctgctcggccagcctcttcctgctttggtatcgcacct 277
            ||||| |||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 3460 cgtgggcgctgctcggccagccgcttcctgctctggtaacgcacct 3415
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>gb|AY970702.1| Hordeum vulgare subsp. vulgare cultivar Optic pseudo-response
            regulator PPD-H1 (Ppd-H1) gene, complete cds
          Length = 3539

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 232  cgtggccgctgctcggccagcctcttcctgctttggtatcgcacct 277
            ||||| |||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 3460 cgtgggcgctgctcggccagccgcttcctgctctggtaacgcacct 3415
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>gb|AY970701.1| Hordeum vulgare subsp. vulgare cultivar Igri pseudo-response
            regulator PPD-H1 (Ppd-H1) gene, complete cds
          Length = 3548

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 232  cgtggccgctgctcggccagcctcttcctgctttggtatcgcacct 277
            ||||| ||||||||||||| || ||||||||| ||||| |||||||
Sbjct: 3469 cgtgggcgctgctcggccaaccgcttcctgctctggtaacgcacct 3424
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>dbj|AK059361.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E01, full
           insert sequence
          Length = 382

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 94  gggttttatttattgagcactctaatgtg 122
           |||||||||||||||||||||| ||||||
Sbjct: 159 gggttttatttattgagcactccaatgtg 131
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>emb|AL353646.9| Human DNA sequence from clone RP11-186A13 on chromosome 13, complete
             sequence
          Length = 49820

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 80    taatcatattggtggggtttt 100
             |||||||||||||||||||||
Sbjct: 10223 taatcatattggtggggtttt 10243
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>dbj|AB189041.1| Oryza sativa (japonica cultivar-group) OsPRR95 mRNA for
            pseudo-response regulator 95, complete cds
          Length = 1872

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 238  cgctgctcggccagcctcttcctgctttggtatcgcacctt 278
            ||||||||||| ||   ||||||||| ||||||||||||||
Sbjct: 1817 cgctgctcggctagtagcttcctgctctggtatcgcacctt 1777
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>dbj|AK067728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116P12, full
            insert sequence
          Length = 2399

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 238  cgctgctcggccagcctcttcctgctttggtatcgcacctt 278
            ||||||||||| ||   ||||||||| ||||||||||||||
Sbjct: 1953 cgctgctcggctagtagcttcctgctctggtatcgcacctt 1913
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>dbj|AK067314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102G21, full
            insert sequence
          Length = 2555

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 238  cgctgctcggccagcctcttcctgctttggtatcgcacctt 278
            ||||||||||| ||   ||||||||| ||||||||||||||
Sbjct: 2083 cgctgctcggctagtagcttcctgctctggtatcgcacctt 2043
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>gb|AC006442.1|AC006442 Homo sapiens, clone hRPK.7_A_1, complete sequence
          Length = 155935

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    taatcatattggtggggtttt 100
             |||||||||||||||||||||
Sbjct: 11000 taatcatattggtggggtttt 10980
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>gb|AC012626.10| Homo sapiens chromosome 16 clone CTD-2118O12, complete sequence
          Length = 149370

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    catattggtggggttttatttatt 107
             |||| |||||||||||||||||||
Sbjct: 19725 catagtggtggggttttatttatt 19748
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>gb|AY132905.1| Escherichia fergusonii strain ATCC 35469
           phosphoribosylaminoimidazole sythetase (purM) gene,
           partial cds
          Length = 1025

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  caggcagggcaataatcata 87
           ||||||||||||||||||||
Sbjct: 976 caggcagggcaataatcata 957
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>gb|AY132899.1| Escherichia coli strain ECOR41 phosphoribosylaminoimidazole
           sythetase (purM) gene, partial cds
          Length = 1025

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  caggcagggcaataatcata 87
           ||||||||||||||||||||
Sbjct: 976 caggcagggcaataatcata 957
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>gb|AY132898.1| Escherichia coli strain ECOR40 phosphoribosylaminoimidazole
           sythetase (purM) gene, partial cds
          Length = 1025

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  caggcagggcaataatcata 87
           ||||||||||||||||||||
Sbjct: 976 caggcagggcaataatcata 957
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>gb|AY132896.1| Escherichia coli strain ECOR64 phosphoribosylaminoimidazole
           sythetase (purM) gene, partial cds
          Length = 1025

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  caggcagggcaataatcata 87
           ||||||||||||||||||||
Sbjct: 976 caggcagggcaataatcata 957
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>gb|AY132895.1| Escherichia coli strain ECOR62 phosphoribosylaminoimidazole
           sythetase (purM) gene, partial cds
          Length = 1025

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  caggcagggcaataatcata 87
           ||||||||||||||||||||
Sbjct: 976 caggcagggcaataatcata 957
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>gb|AY132894.1| Escherichia coli strain ECOR60 phosphoribosylaminoimidazole
           sythetase (purM) gene, partial cds
          Length = 1025

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  caggcagggcaataatcata 87
           ||||||||||||||||||||
Sbjct: 976 caggcagggcaataatcata 957
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>gb|AY132893.1| Escherichia coli strain ECOR59 phosphoribosylaminoimidazole
           sythetase (purM) gene, partial cds
          Length = 1025

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  caggcagggcaataatcata 87
           ||||||||||||||||||||
Sbjct: 976 caggcagggcaataatcata 957
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>gb|AC127421.3| Mus musculus BAC clone RP24-314F1 from chromosome 18, complete sequence
          Length = 170221

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    tcatattggtggggttttat 102
             ||||||||||||||||||||
Sbjct: 78717 tcatattggtggggttttat 78736
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>gb|AC116998.3| Mus musculus BAC clone RP23-16F6 from 18, complete sequence
          Length = 216959

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    tcatattggtggggttttat 102
             ||||||||||||||||||||
Sbjct: 70095 tcatattggtggggttttat 70114
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>gb|AC136974.11| Medicago truncatula clone mth2-22e9, complete sequence
          Length = 124037

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 30    catagattagatattacaaatgttcatctgga 61
             |||| |||||||||||||||  ||||||||||
Sbjct: 80613 catatattagatattacaaaatttcatctgga 80582
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 68      caggcagggcaataatcata 87
               ||||||||||||||||||||
Sbjct: 2757947 caggcagggcaataatcata 2757928
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>dbj|AB243683.1| Lemna paucicostata LpPRRH95 mRNA for pseudo-response regulator 95
            homologue, complete cds
          Length = 1770

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                        
Query: 211  cggacaaattgcccacggacacgtggccgctgctcggccagcctcttcctgctttggtat 270
            ||||||||||||||   ||| || |||| |||||| || ||  | ||||| |||||||||
Sbjct: 1573 cggacaaattgccctttgacccgaggcctctgctctgcgagttttttcctactttggtat 1514

                        
Query: 271  cgcacctttttc 282
            || |||||||||
Sbjct: 1513 cgaacctttttc 1502
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 238      cgctgctcggccagcctcttcctgctttggtatcgcacct 277
                ||||||||||| ||   ||||||||| |||||||||||||
Sbjct: 20584251 cgctgctcggctagtagcttcctgctctggtatcgcacct 20584290
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>gb|AC040173.5| Homo sapiens chromosome 16 clone RP11-65J21, complete sequence
          Length = 192971

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 84     catattggtggggttttatttatt 107
              |||| |||||||||||||||||||
Sbjct: 107713 catagtggtggggttttatttatt 107736
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>gb|AF293164.1|AF293164 Escherichia coli isolate ECOR59 phosphoribosylaminoimidazole
           synthetase (purM) and phosphoribosylglycinamide
           formyltransferase 1 (purN) genes, complete cds
          Length = 2101

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  caggcagggcaataatcata 87
           ||||||||||||||||||||
Sbjct: 999 caggcagggcaataatcata 980
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>gb|AF293161.1|AF293161 Escherichia coli isolate ECOR40 phosphoribosylaminoimidazole
           synthetase (purM) and phosphoribosylglycinamide
           formyltransferase 1 (purN) genes, complete cds
          Length = 2101

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  caggcagggcaataatcata 87
           ||||||||||||||||||||
Sbjct: 999 caggcagggcaataatcata 980
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>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1254_E07
          Length = 124028

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 238    cgctgctcggccagcctcttcctgctttggtatcgcacct 277
              ||||||||||| ||   ||||||||| |||||||||||||
Sbjct: 101898 cgctgctcggctagtagcttcctgctctggtatcgcacct 101937
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>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0515E01
          Length = 140063

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 238   cgctgctcggccagcctcttcctgctttggtatcgcacct 277
             ||||||||||| ||   ||||||||| |||||||||||||
Sbjct: 49909 cgctgctcggctagtagcttcctgctctggtatcgcacct 49948
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>gb|AC149380.2| Phakopsora pachyrhizi clone JGIAFNA-5A6, complete sequence
          Length = 35350

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    atagattagatattacaaat 50
             ||||||||||||||||||||
Sbjct: 24945 atagattagatattacaaat 24926


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,203,072
Number of Sequences: 3902068
Number of extensions: 3203072
Number of successful extensions: 75886
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 75762
Number of HSP's gapped (non-prelim): 124
length of query: 291
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 269
effective length of database: 17,147,199,772
effective search space: 4612596738668
effective search space used: 4612596738668
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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