ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl39h02 |
|---|---|
| Clone Library Name | barley_pub |
>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF| Length = 1097 Score = 110 bits (274), Expect = 2e-24 Identities = 52/91 (57%), Positives = 72/91 (79%), Gaps = 1/91 (1%) Frame = -2 Query: 438 LEQIFGLSSLAGAPNLLALEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGD-F 262 L+++F + S A P+ L+++DN LS+K N+VVNEIRRQR SYLR++LC+KGDP+G+ Sbjct: 1006 LQKLFNVRSAAELPSQYVLQKYDNQLSKKFNDVVNEIRRQRSSYLRIKLCKKGDPAGNML 1065 Query: 261 FRSLLVEDKAPGGLSYVEFLVHVHRQIQSKM 169 F+S +VED+ GG SYV+FLV VHRQIQ K+ Sbjct: 1066 FQSYMVEDRGSGGASYVDFLVSVHRQIQHKL 1096
>SC24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-related protein C)| Length = 1094 Score = 63.5 bits (153), Expect = 2e-10 Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 2/93 (2%) Frame = -2 Query: 438 LEQIFGLSSLAGAPN-LLALEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDF 262 ++ +F +SS + + L L DN LS+KV +++ +R QR Y++L + ++ D Sbjct: 1002 VQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEML 1061 Query: 261 FRSLLVEDKA-PGGLSYVEFLVHVHRQIQSKMT 166 F+ LVEDK+ GG SYV+FL H+H++I+ ++ Sbjct: 1062 FKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS 1094
>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640| Length = 1069 Score = 62.4 bits (150), Expect = 5e-10 Identities = 28/46 (60%), Positives = 36/46 (78%) Frame = -2 Query: 438 LEQIFGLSSLAGAPNLLALEQFDNALSRKVNEVVNEIRRQRCSYLR 301 L+++F +SS A PN L+Q+DN LS+K N+ VNEIRRQRCSYLR Sbjct: 990 LQKLFAVSSAAEIPNQFVLQQYDNQLSKKFNDAVNEIRRQRCSYLR 1035
>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)| (Fragment) Length = 1078 Score = 45.8 bits (107), Expect = 5e-05 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Frame = -2 Query: 438 LEQIFGLSSLAGAPNLLA-LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDF 262 L Q+ G+ + A P + L + D S ++ ++ +R QR + L + R P Sbjct: 990 LSQVLGVQNYASIPQPMTDLPELDTPESARIIAFISWLREQRPFFPILYVIRDESPMKAN 1049 Query: 261 FRSLLVEDKAPGGLSYVEFLVHVHRQI 181 F ++ED+ LSY EFL+H+ +Q+ Sbjct: 1050 FLQNMIEDRTESALSYYEFLLHIQQQV 1076
>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)| Length = 1090 Score = 45.8 bits (107), Expect = 5e-05 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Frame = -2 Query: 438 LEQIFGLSSLAGAPNLLA-LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDF 262 L Q+ G+ + A P + L + D S ++ ++ +R QR + L + R+ Sbjct: 1002 LSQVLGVQNYASIPQTMTDLPELDTPESARIAAFISWLREQRPFFPVLYVIREESLMKAA 1061 Query: 261 FRSLLVEDKAPGGLSYVEFLVHVHRQI 181 F LVED+ LSY EFL+H+ +Q+ Sbjct: 1062 FLQSLVEDRTESALSYYEFLLHIQQQV 1088
>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)| Length = 1032 Score = 42.7 bits (99), Expect = 4e-04 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Frame = -2 Query: 438 LEQIFGLSSLAGA-PNLLALEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDF 262 ++ IF + S A ++ L + N S+++ ++ I+++R ++L + ++ + Sbjct: 940 IQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMV 999 Query: 261 FRSLLVEDKAP-GGLSYVEFLVHVHRQI 181 FR LVEDK GG SYV+FL VH++I Sbjct: 1000 FRQFLVEDKGLYGGSSYVDFLCCVHKEI 1027
>SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-related protein B)| Length = 1268 Score = 42.0 bits (97), Expect = 7e-04 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Frame = -2 Query: 438 LEQIFGLSSLAGAPNLLA-LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDF 262 +E + G ++ A P + L + D S + + +R R L + + P+ Sbjct: 1180 IEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAE 1239 Query: 261 FRSLLVEDKAPGGLSYVEFLVHVHRQI 181 F L+ED+ SY EFL+HV +QI Sbjct: 1240 FFQHLIEDRTEAAFSYYEFLLHVQQQI 1266
>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II| Length = 891 Score = 41.6 bits (96), Expect = 9e-04 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Frame = -2 Query: 438 LEQIFGLSSLAGAPNLLALE--QFDNALSRKVNEVVNEIRRQRCSY-LRLRLCRKG--DP 274 L+ + G+ SL +L ALE D LS +V +++ +R Q S L ++ R+G Sbjct: 796 LQDLLGVESLEDIDSLKALELPTLDTVLSVQVRNLLSSLRMQFPSMALHPQIVRQGLDGS 855 Query: 273 SGDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSK 172 G+ F S LVED G Y++FL +H + ++ Sbjct: 856 EGEIF-STLVEDNTREGFGYLDFLTKIHESLHTQ 888
>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100| Length = 1038 Score = 40.0 bits (92), Expect = 0.003 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 3/74 (4%) Frame = -2 Query: 390 LALEQFDNALSRKVNEVVNEIRRQRCSYLRLR-LCRKGDPSGDFFRSL--LVEDKAPGGL 220 + ++ +N +S+K+ +V ++R SY + L R+G+ + F L L+ED+ G Sbjct: 963 VTFQEQENGMSKKLMRLVKKLRESDPSYHPMCFLVRQGEQPREGFLLLRNLIEDQMGGSS 1022 Query: 219 SYVEFLVHVHRQIQ 178 YV++++ +HRQ+Q Sbjct: 1023 GYVDWILQLHRQVQ 1036
>SODC_PHOLE (P00446) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)| Length = 173 Score = 31.6 bits (70), Expect = 0.91 Identities = 18/48 (37%), Positives = 24/48 (50%) Frame = +3 Query: 225 HQVLCPPPTANGRNLQTGRPFGTVSVSSKSISVALFHSRLHSLSWTMH 368 HQ L T +LQTG+P GT+ +S V +F L L+ MH Sbjct: 18 HQALAQDLTVKMTDLQTGKPVGTIELSQNKYGV-VFTPELADLTPGMH 64
>YCF1_ADICA (Q85FG7) Hypothetical 199.0 kDa protein ycf1| Length = 1691 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = +1 Query: 118 GIDNLYQPKYHTNEASGHLALDLPVNMYEEL---HIGKATRCFVLHQQRTEE--ISRRVA 282 G+ NLYQPK + + H L + E+ H+ T CF +T+E +VA Sbjct: 1170 GVSNLYQPKMYEKQTPVHYNLIATKFLSPEIRNNHVNDLTMCFDTETGKTDEEFFDEKVA 1229 Query: 283 LSAQS 297 S ++ Sbjct: 1230 RSIEN 1234
>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)| (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte nuclear envelope protein 1) (Myne-1) (Enaptin) Length = 8797 Score = 30.4 bits (67), Expect = 2.0 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%) Frame = +1 Query: 166 GHLALDLPVNMYEELHI--GKATRCFVLHQQRTEEISRR-VALSAQSQ-SQVRASLS 324 GHLA + E+LH+ GKA CF L ++ ++ + RR +ALS ++ Q ASLS Sbjct: 1825 GHLAKLGSLGRAEDLHLLQGKAEDCFQLFEEASQVVERRQLALSHLAEFLQSHASLS 1881
>YIY8_SCHPO (Q9UUI5) Hypothetical protein C22F8.08 in chromosome I| Length = 926 Score = 30.0 bits (66), Expect = 2.7 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 6/89 (6%) Frame = -2 Query: 426 FGLSSLAGAP-NLLALEQFDNALSRKVNEVVNEIR---RQRCSYLRLRLCR-KGDPS-GD 265 FG++SLA + DN L+ ++N ++ ++R + L L R GDP Sbjct: 837 FGVNSLADLKAGRFTMPVIDNPLNVRINAILGKLRSLDKGSTIMPSLYLVRGDGDPQLRS 896 Query: 264 FFRSLLVEDKAPGGLSYVEFLVHVHRQIQ 178 +F S VED++ SY++FL + +++ Sbjct: 897 WFFSHFVEDRSENSPSYLQFLQTLKEKVR 925
>ATG5_NEUCR (Q872C6) Autophagy protein 5| Length = 397 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/72 (30%), Positives = 31/72 (43%) Frame = +3 Query: 228 QVLCPPPTANGRNLQTGRPFGTVSVSSKSISVALFHSRLHSLSWTMHYQIAPMPTDLVHQ 407 Q L PP N R QT + + KS+ ALF S + ++ AP+P + Sbjct: 324 QTLVPPRGPNNRTPQT------LGQALKSLLPALFPSSRDPVLASVILHGAPVPFSAPLE 377 Query: 408 PRMRDQIFAPGW 443 MRD + GW Sbjct: 378 ELMRDASYPDGW 389
>SYGM2_ARATH (Q8L785) Glycyl-tRNA synthetase 2, chloroplast/mitochondrial| precursor (EC 6.1.1.14) (Glycine--tRNA ligase 2) (GlyRS 2) Length = 1067 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +1 Query: 64 KLFSERKTVHLIFVYPHAGIDNLYQP-KYHTNEASGHLALDLPVNMYEEL 210 +LF E + + HA +D L + Y EA LAL LP+ Y++L Sbjct: 257 ELFLENEKEMSSYYLEHASVDRLQKHFDYFDEEARSLLALGLPIPAYDQL 306
>NU5C_ORYSA (P12129) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) Length = 734 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +2 Query: 50 LSTSTNSFQKEKRSI*SLYTHMRESIISTNQNITPMKLQVILLWICL 190 L+ S N FQ+ S + Y + +I S + I + + + +LWICL Sbjct: 576 LTPSINFFQESSNSSINSYEFITNAISSVSLAIFGLFIGIYVLWICL 622
>RARG2_HUMAN (P22932) Retinoic acid receptor gamma-2 (RAR-gamma-2)| Length = 443 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = -2 Query: 426 FGLSSLAGAPNLLALEQFDNAL---SRKVNEVVNEIRRQRCSYLRLRLC 289 +G+SS G N + R N ++N++ R RC Y RL+ C Sbjct: 91 YGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKC 139
>SRFAA_BACSU (P27206) Surfactin synthetase subunit 1| Length = 3588 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -2 Query: 420 LSSLAGAPNLLALEQFDNALSRKVNEVVNE-IRRQRCSYLRLRLCRKGDP 274 +S+LAG L++ + D L V + + E IRR LRLRL G+P Sbjct: 27 ISNLAGIGKLVSADAIDYVL---VEQAIQEFIRRNDAMRLRLRLDENGEP 73
>RARG1_MOUSE (P18911) Retinoic acid receptor gamma-A (RAR-gamma-A)| Length = 458 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = -2 Query: 426 FGLSSLAGAPNLLALEQFDNAL---SRKVNEVVNEIRRQRCSYLRLRLC 289 +G+SS G N + R N ++N++ R RC Y RL+ C Sbjct: 102 YGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKC 150
>RARG2_MOUSE (P20787) Retinoic acid receptor gamma-B (RAR-gamma-B)| Length = 447 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = -2 Query: 426 FGLSSLAGAPNLLALEQFDNAL---SRKVNEVVNEIRRQRCSYLRLRLC 289 +G+SS G N + R N ++N++ R RC Y RL+ C Sbjct: 91 YGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKC 139
>RARA_FUGRU (Q9W5Z3) Retinoic acid receptor alpha (RAR-alpha)| Length = 447 Score = 28.9 bits (63), Expect = 5.9 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = -2 Query: 357 RKVNEVVNEIRRQRCSYLRLRLC 289 R+ N ++N++ R RC Y RL+ C Sbjct: 118 REKNCIINKVTRNRCQYCRLQKC 140
>RARG1_HUMAN (P13631) Retinoic acid receptor gamma-1 (RAR-gamma-1)| Length = 454 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = -2 Query: 426 FGLSSLAGAPNLLALEQFDNAL---SRKVNEVVNEIRRQRCSYLRLRLC 289 +G+SS G N + R N ++N++ R RC Y RL+ C Sbjct: 102 YGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKC 150
>RARB_HUMAN (P10826) Retinoic acid receptor beta (RAR-beta) (RAR-epsilon)| (HBV-activated protein) Length = 455 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 357 RKVNEVVNEIRRQRCSYLRLRLC 289 R N V+N++ R RC Y RL+ C Sbjct: 126 RDKNCVINKVTRNRCQYCRLQKC 148
>RARB_COTJA (Q9W6B3) Retinoic acid receptor beta (RAR-beta)| Length = 455 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 357 RKVNEVVNEIRRQRCSYLRLRLC 289 R N V+N++ R RC Y RL+ C Sbjct: 126 RDKNCVINKVTRNRCQYCRLQKC 148
>RARB_CHICK (P22448) Retinoic acid receptor beta (RAR-beta)| Length = 455 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 357 RKVNEVVNEIRRQRCSYLRLRLC 289 R N V+N++ R RC Y RL+ C Sbjct: 126 RDKNCVINKVTRNRCQYCRLQKC 148
>RARB_NOTVI (P18515) Retinoic acid receptor beta (RAR-beta) (Fragment)| Length = 158 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 357 RKVNEVVNEIRRQRCSYLRLRLC 289 R N V+N++ R RC Y RL+ C Sbjct: 72 RDKNCVINKVTRNRCQYCRLQRC 94
>RARB_MOUSE (P22605) Retinoic acid receptor beta (RAR-beta)| Length = 482 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 357 RKVNEVVNEIRRQRCSYLRLRLC 289 R N V+N++ R RC Y RL+ C Sbjct: 153 RDKNCVINKVTRNRCQYCRLQKC 175
>STE20_YEAST (Q03497) Serine/threonine-protein kinase STE20 (EC 2.7.11.1)| Length = 939 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -2 Query: 366 ALSRKVNEVVNEIRRQRCSYLRLRL---CRKGDPSGDFFRSLLVEDKAPGGL 220 +LS+++NE E R +R L +L C GDPS + + + A GG+ Sbjct: 583 SLSKELNEKKREERERRKKQLYAKLNEICSDGDPSTKYANLVKIGQGASGGV 634 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,106,316 Number of Sequences: 219361 Number of extensions: 1565049 Number of successful extensions: 4407 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4331 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4405 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
