ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl39g11 |
|---|---|
| Clone Library Name | barley_pub |
>ENH3_HUMAN (Q9N2J8) HERV-H_2q24.1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (Env protein HERV-H/p59) (HERV-H/env59) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 555 Score = 29.6 bits (65), Expect = 1.8 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = +2 Query: 170 TQPIYFSTWKIGYENVPYTTKELPMLLQTSLP--RLIPLEYHPLPLEFGLHLWVLAKKQY 343 T + F T KI + N TKELP+ L T P R+IPL PL + GL +A Sbjct: 356 TCTLVFLTPKIQFAN---GTKELPVPLMTLTPQKRVIPL--IPLMVGLGLSASTIALSTG 410 Query: 344 VAHWLLSISPFR 379 +A S++ FR Sbjct: 411 IAGISTSVTTFR 422
>ESTD_PIG (Q9GJT2) Esterase D (EC 3.1.1.1)| Length = 282 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +2 Query: 194 WKIGYENVPYTTKELPMLLQTSLP 265 WK Y Y T+ELP L+ + P Sbjct: 114 WKTNYRMYSYVTEELPQLINANFP 137
>ESTD_MOUSE (Q9R0P3) Esterase D (EC 3.1.1.1) (Esterase 10) (Sid 478)| Length = 282 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +2 Query: 194 WKIGYENVPYTTKELPMLLQTSLP 265 WK Y Y T+ELP L+ + P Sbjct: 114 WKANYRMYSYVTEELPQLINANFP 137
>ESTD_HUMAN (P10768) Esterase D (EC 3.1.1.1)| Length = 282 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +2 Query: 194 WKIGYENVPYTTKELPMLLQTSLP 265 WK Y Y T+ELP L+ + P Sbjct: 114 WKTNYRMYSYVTEELPQLINANFP 137
>Y415_TREPA (O83430) Hypothetical protein TP0415| Length = 177 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 6/34 (17%) Frame = +1 Query: 265 KIDSIRVSSPS------TGVWTSFVGFGQEAICG 348 K+D IRV G+W FVG G+E I G Sbjct: 57 KVDDIRVKGEQHGGFLCAGMWGDFVGTGEERIAG 90
>Y1318_METJA (Q58714) Hypothetical protein MJ1318| Length = 602 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = -2 Query: 217 HIFVPNFPCTEIDGLGAELV---VDGEVFNKSLYRCVVYVILQ 98 H+F+ P TE+D G+ + V GEV K + + VY+ ++ Sbjct: 58 HVFMDTMPLTELDMQGSARIAAKVAGEVTGKDMSKYNVYITVR 100
>IKKE_HUMAN (Q14164) Inhibitor of nuclear factor kappa-B kinase epsilon subunit| (EC 2.7.11.1) (I kappa-B kinase epsilon) (IkBKE) (IKK-epsilon) (IKK-E) (Inducible I kappa-B kinase) (IKK-i) Length = 716 Score = 28.1 bits (61), Expect = 5.2 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Frame = +1 Query: 49 SDWL*KIFISYKVVMAIVI*HIL---HICIAIY*KPLHQQPTLHPTHLFQYMEN--WVRK 213 SD L ++ + + V+ HI H IAI+ + +H+Q ++ P H E V + Sbjct: 303 SDILQRVVVHVFSLSQAVLHHIYIHAHNTIAIFQEAVHKQTSVAPRHQEYLFEGHLCVLE 362 Query: 214 CAVHDQRIAYVAANKPAKIDSIRV 285 +V Q IA+ A+ P + S + Sbjct: 363 PSVSAQHIAHTTASSPLTLFSTAI 386
>DP2L_METTH (O27579) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)| Length = 1092 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = -3 Query: 243 IGNSLVVYGTFSYPIFHVLK*MGWVQSWLLMERFSINRY--TDV*YMSYYNSHNN 85 +G+ LV +G F HVL GW + W + S +Y D +SYY + N Sbjct: 398 LGDMLVAFGEFLRNN-HVLMPAGWCEEWWIQTILSSPKYPGDDPLNLSYYRTRWN 451
>THIG_CHRVO (Q7NRL4) Thiazole biosynthesis protein thiG| Length = 264 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +1 Query: 211 KCAVHDQRIAYVAANKPAKIDSIRVSSPSTGVWTS 315 K AV R AY+A P + S SSPS GV +S Sbjct: 227 KLAVEAGRAAYLAGRMPKRFYSAVPSSPSEGVISS 261
>V054_FOWPV (P21970) Putative Nudix hydrolase FPV054 (EC 3.6.-.-)| Length = 231 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +3 Query: 54 LAIENFHLLQGCYGYCNMTYTTHLYSDLLK 143 L IE+ L + YGYC + + LYS+++K Sbjct: 161 LTIEDKILRRTFYGYCIVCFIDQLYSEIIK 190
>YGFA_ECOLI (P0AC28) Hypothetical protein ygfA| Length = 182 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +2 Query: 146 LSINNQLCTQPIYFSTWKIGYENVPYTTKELPMLLQTSLPRLIPLEYHP 292 LS + +L TQP+ W+ G LP+L S L+ L YHP Sbjct: 41 LSFDGELDTQPLIEQLWRAG------KRVYLPVLHPFSAGNLLFLNYHP 83
>YGFA_ECO57 (P0AC29) Hypothetical protein ygfA| Length = 182 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +2 Query: 146 LSINNQLCTQPIYFSTWKIGYENVPYTTKELPMLLQTSLPRLIPLEYHP 292 LS + +L TQP+ W+ G LP+L S L+ L YHP Sbjct: 41 LSFDGELDTQPLIEQLWRAG------KRVYLPVLHPFSAGNLLFLNYHP 83
>MDR3_HUMAN (P21439) Multidrug resistance protein 3 (EC 3.6.3.44)| (P-glycoprotein 3) Length = 1279 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +1 Query: 22 MYGIVT-HNYSDWL*KIFISYKVVMAI 99 M G++T YSDW K+F+S +MAI Sbjct: 39 MIGVLTLFRYSDWQDKLFMSLGTIMAI 65
>LYST_MOUSE (P97412) Lysosomal trafficking regulator (Beige protein) (CHS1| homolog) Length = 3788 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -2 Query: 214 IFVPNFPCTEIDGLGAELVVDGEVFNKSLYRCVVYVILQ*P 92 IF+ PCTEI LG +V+ + F S +C+ + L P Sbjct: 1357 IFLEKSPCTEILLLGIHKIVESD-FTMSPSQCLTFPFLHTP 1396
>ATM_ASHGO (Q751J3) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2768 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +2 Query: 230 KELPMLLQTSLPRLIPLEYHP 292 KELP LL+ SL IPL Y P Sbjct: 1141 KELPQLLEISLQYAIPLAYIP 1161
>CILP2_HUMAN (Q8IUL8) Cartilage intermediate layer protein 2 precursor (CILP-2)| [Contains: Cartilage intermediate layer protein 2 C1; Cartilage intermediate layer protein 2 C2] Length = 1156 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +1 Query: 232 RIAYVAANKPAKIDSIRVSS--PSTGVWTSFVGFGQEAICGSLVTKHQPI 375 R+A + P ++++++ S P TG+W GF +E G V + + + Sbjct: 664 RVAASQIHMPGHVEALKLWSLNPETGLWEEESGFRREGSSGPRVRREERV 713 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,011,332 Number of Sequences: 219361 Number of extensions: 1385557 Number of successful extensions: 3171 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3171 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
