Clone Name | rbastl39g10 |
---|---|
Clone Library Name | barley_pub |
>FADB_SHEON (Q8EKR9) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA| hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2. Length = 716 Score = 28.9 bits (63), Expect = 6.3 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +2 Query: 161 KPQLFC-MHLPNVVKEKPLLEEAKTSRNTAETL-HVLLISSQRMKTAI 298 KP+ FC MH N V + PL+E + ++ ET+ V+ +S+ KT I Sbjct: 442 KPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPI 489
>YAD7_YEAST (P39728) Hypothetical 30.5 kDa protein in PYK1-SNC1 intergenic| region Length = 267 Score = 28.9 bits (63), Expect = 6.3 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = +3 Query: 243 LQKLSM-FYSYPHNV*KQPFLLSP*QAKSTIAQPIMDIKSPQIDTSYAWEGSSLSVSICS 419 LQKL Y P + QP LL K I + K T Y +S+ V++CS Sbjct: 16 LQKLDTNVYFGPCEILTQPILLQYENIKFIIGVNLSTEKIASFYTQYFRNSNSVVVNLCS 75 Query: 420 PTCSS*APSLA 452 PT ++ A A Sbjct: 76 PTTAAVATKKA 86
>METK_MYCGE (P47293) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 383 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 10/46 (21%) Frame = -3 Query: 121 WSIT-----L*FLSTVAHSDSEIFGHYGNNIY-----VAIVKLNCL 14 WSIT L L V +SD ++GH+GN++ + KL CL Sbjct: 333 WSITKIIDKLKLLDFVKYSDYAVYGHFGNDLSPWEQPTELDKLECL 378
>SCN7A_HUMAN (Q01118) Sodium channel protein type 7 alpha subunit (Sodium| channel protein type VII alpha subunit) (Putative voltage-gated sodium channel alpha subunit Nax) (Sodium channel protein, cardiac and skeletal muscle alpha-subunit) Length = 1682 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = +1 Query: 190 KRRQRKTAIGGGKDV*KHCRNSPCSTHILTTYENSHSFYRPSRPK 324 K Q K+ GG K+ K +S CST + E FY R K Sbjct: 851 KEIQSKSGDGGSKEKIKQSSSSECSTVDIAISEEEEMFYGGERSK 895
>MIPO1_HUMAN (Q8TD10) Mirror-image polydactyly gene 1 protein| Length = 442 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +3 Query: 75 ESLWATVDKNYNVMDHRH*KNTLETMGPQNLSCSACICQTSSKKNR 212 ES++ T +K YNVM+HRH E M P CQ +S ++ Sbjct: 74 ESVYCTTEK-YNVMEHRHNDMHYECMTP---------CQVTSDSDK 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,844,010 Number of Sequences: 219361 Number of extensions: 1375357 Number of successful extensions: 3294 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3213 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3293 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)