ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BLNK_RAT (Q4KM52) B-cell linker protein (Cytoplasmic adapter pro... 28 4.1
2OTC_MYCPA (Q740I5) Ornithine carbamoyltransferase (EC 2.1.3.3) (... 28 5.3
3MRP5_HUMAN (O15440) Multidrug resistance-associated protein 5 (M... 28 5.3
4YL381_MIMIV (Q5UQX2) Hypothetical protein L381 28 5.3
5ADH_THEBR (P14941) NADP-dependent alcohol dehydrogenase (EC 1.1.... 28 5.3
6UBX_DROVI (Q24703) Homeotic protein ultrabithorax (Fragment) 27 9.1

>BLNK_RAT (Q4KM52) B-cell linker protein (Cytoplasmic adapter protein)|
          Length = 457

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
 Frame = -3

Query: 327 EYMYPLKQSEQSVR*VFERSPLITDVFPAPRSSVNANHGKK-VTCND**AGH-------V 172
           +Y+ P++ ++++     E SPL  +  P    S   N   K V+     AG         
Sbjct: 177 DYVVPVEDNDENYIHPRESSPLPAEKAPTVNRSTKPNSSSKHVSPPGTVAGRNSGVWDSK 236

Query: 171 IFLPASPCPLPRSSGVQVFSPLQSEGTP 88
             LPA+P PLPR +G +  +PL++   P
Sbjct: 237 SSLPAAPSPLPR-AGKKTATPLKTTPVP 263



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>OTC_MYCPA (Q740I5) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)|
          Length = 309

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +1

Query: 208 LSVVSIHTGTWSWEYICYQGRSFEYLSH*LL--GLLEGIHV--FCPSGLPSVPQ 357
           L  ++ H G+ S   +CY G     ++H L+  G+  GIHV    P G    P+
Sbjct: 137 LQAIAEHKGSLSGLRMCYLGDGANNMAHSLMLGGVTAGIHVTIAAPDGFTPAPE 190



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>MRP5_HUMAN (O15440) Multidrug resistance-associated protein 5 (Multi-specific|
           organic anion transporter-C) (MOAT-C) (pABC11) (SMRP)
          Length = 1437

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/19 (47%), Positives = 17/19 (89%)
 Frame = +2

Query: 215 WLAFTLERGAGNTSVIRGD 271
           WL++ +++G+GNT+V RG+
Sbjct: 879 WLSYWIKQGSGNTTVTRGN 897



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>YL381_MIMIV (Q5UQX2) Hypothetical protein L381|
          Length = 280

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
 Frame = +1

Query: 115 KNLNPTGSWKGARRSRKKNN--------MTCSSVVTRYLLSVVSI--HTGTWSWE 249
           +NLNP G W G+    K +N        +T   V+  Y+   +++  H+  ++W+
Sbjct: 213 ENLNPVGVWTGSYNLSKTSNFSLENALYITSQIVIAEYIKEFLAVYKHSENFNWK 267



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>ADH_THEBR (P14941) NADP-dependent alcohol dehydrogenase (EC 1.1.1.2)|
          Length = 352

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 172 YFSSGFSLPPSKIQWGSGFFSFTIRG 95
           YF  G  LP  +++WG G    TI+G
Sbjct: 267 YFGEGEVLPVPRLEWGCGMAHKTIKG 292



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>UBX_DROVI (Q24703) Homeotic protein ultrabithorax (Fragment)|
          Length = 87

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 185 HQSLHVTFFPWLAFTLERGAG-NTSVIRGDLS 277
           HQ+ + TF+PW+A   E  A  + S IR DL+
Sbjct: 15  HQASNHTFYPWMAIAGESTADPSKSKIRSDLT 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,613,189
Number of Sequences: 219361
Number of extensions: 1184004
Number of successful extensions: 2940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2940
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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