ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl39g01 |
|---|---|
| Clone Library Name | barley_pub |
>CASG_MOUSE (Q02862) Gamma-casein precursor (PP22)| Length = 184 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%) Frame = -2 Query: 408 SEGQQP*REISEKMVGEEELQVNM-------EATRSEHFLTFCVQLHQMKRST 271 S ++ E+SEK+V EE +VN+ + ++ F C LHQ ++S+ Sbjct: 55 SSSEESSEEVSEKIVQSEEQKVNLNQQKKFKQFSQESSFSQCCTPLHQQQQSS 107
>ENGA_STRA5 (Q8DY73) GTP-binding protein engA| Length = 436 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 10/83 (12%) Frame = +1 Query: 13 DNLYLITLSYFRFIALHTRQHTHTYTDNSKLAYKYRSLAVPLAILSD----------TPK 162 DN ++ + F++ T+Q H D K + ++ +P A+L+D TP Sbjct: 315 DNFQFLSYAPIIFVSAETKQRLHKLPDMIKRISESQNKRIPSAVLNDVIMDAIAINPTPT 374 Query: 163 KLDAQVSAMESTASAISPGLIVI 231 ++ +T A+ P V+ Sbjct: 375 DKGKRLKIFYATQVAVKPPTFVV 397
>ENGA_STRA3 (Q8E3T9) GTP-binding protein engA| Length = 436 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 10/83 (12%) Frame = +1 Query: 13 DNLYLITLSYFRFIALHTRQHTHTYTDNSKLAYKYRSLAVPLAILSD----------TPK 162 DN ++ + F++ T+Q H D K + ++ +P A+L+D TP Sbjct: 315 DNFQFLSYAPIIFVSAETKQRLHKLPDMIKRISESQNKRIPSAVLNDVIMDAIAINPTPT 374 Query: 163 KLDAQVSAMESTASAISPGLIVI 231 ++ +T A+ P V+ Sbjct: 375 DKGKRLKIFYATQVAVKPPTFVV 397
>PURL_LEPIN (Q8F6I3) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 745 Score = 29.3 bits (64), Expect = 2.3 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +1 Query: 115 YRSLAVPLAILSDTPKKLDAQVSAMESTASAISPGLIV---IESENHETAFSP 264 Y++ + L L T KL A+ + A I GL V IES NH TA P Sbjct: 50 YKNSILKLKTLPTTSDKLLAKAGEENAGAMDIGDGLAVVFKIESHNHPTAVEP 102
>PURL_LEPIC (Q72PR5) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 745 Score = 29.3 bits (64), Expect = 2.3 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +1 Query: 115 YRSLAVPLAILSDTPKKLDAQVSAMESTASAISPGLIV---IESENHETAFSP 264 Y++ + L L T KL A+ + A I GL V IES NH TA P Sbjct: 50 YKNSILKLKTLPTTSDKLLAKAGEENAGAMDIGDGLAVVFKIESHNHPTAVEP 102
>MED21_HUMAN (Q13503) Mediator of RNA polymerase II transcription subunit 21| (RNA polymerase II holoenzyme component SRB7) (RNAPII complex component SRB7) Length = 144 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%) Frame = +1 Query: 139 AILSDTPKKLDAQVSAM---ESTASAISPGLIVIESENHETA 255 A+++ T K +D + ++ ESTA+ + L +E ENHE A Sbjct: 60 ALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAA 101
>CISY_ASPNG (P51044) Citrate synthase, mitochondrial precursor (EC 2.3.3.1)| Length = 475 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +1 Query: 118 RSLAVPLAILSDTPKKLDAQVSAMESTASAISPGLIVIESENHETAFSPA 267 R L+ A SD PK ++ + ST +S + + + HE+AF+ A Sbjct: 144 RDLSAEWAARSDLPKFIEELIDRCPSTLHPMSQFSLAVTALEHESAFAKA 193
>CN145_MOUSE (Q8BI22) Protein C14orf145 homolog| Length = 524 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +1 Query: 64 TRQHTHTYTDNSKLAYKYRSLAVPLAILSDTPKKLDAQVSAMESTASAISPGLIVIESE 240 T + THT +N KL KY+SL L + + ME + + L+ +E+E Sbjct: 262 TEELTHTENENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRLHLKDQLLCLETE 320
>CISY_EMENI (O00098) Citrate synthase, mitochondrial precursor (EC 2.3.3.1)| Length = 474 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = +1 Query: 118 RSLAVPLAILSDTPKKLDAQVSAMESTASAISPGLIVIESENHETAFSPA 267 R L+ A SD PK ++ + + ST ++ + + + HE+AF+ A Sbjct: 144 RDLSAEWAARSDLPKFIEELIDRVPSTLHPMAQFSLAVTALEHESAFAKA 193
>CWC25_KLULA (Q6CUQ5) Pre-mRNA-splicing factor CWC25| Length = 206 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -1 Query: 196 WTPSLIPARPVFWECQKELQEAQQEI 119 W P L+ R WE Q++L E ++I Sbjct: 10 WNPKLVKNRKKVWEAQQQLVEENKKI 35
>ENGA_STRMU (Q8DS90) GTP-binding protein engA| Length = 436 Score = 27.3 bits (59), Expect = 8.8 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 10/83 (12%) Frame = +1 Query: 13 DNLYLITLSYFRFIALHTRQHTHTYTDNSKLAYKYRSLAVPLAILSD----------TPK 162 DN I + F++ T+Q H D K + ++ +P A+L+D TP Sbjct: 315 DNFQYIPYAPIVFVSAVTKQRLHKLPDVIKQVSQSQNTRIPSAVLNDVVMDAVAINPTPT 374 Query: 163 KLDAQVSAMESTASAISPGLIVI 231 ++ +T ++ P VI Sbjct: 375 DKGKRLKIFYATQVSVKPPTFVI 397
>DUS11_MOUSE (Q6NXK5) RNA/RNP complex-1-interacting phosphatase (EC 3.1.3.-)| (Phosphatase that interacts with RNA/RNP complex 1) (Dual-specificity protein phosphatase 11) Length = 321 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = -1 Query: 364 GGRRAPSEHGSYKVRAFPHILRAIASNEEI 275 GG APS+H ++ ++ P+ LR + N+ + Sbjct: 244 GGHLAPSQHFQHQTQSSPYSLRKWSQNQSV 273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,581,559 Number of Sequences: 219361 Number of extensions: 777589 Number of successful extensions: 1996 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1968 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1995 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
