ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl39g01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence Length = 167239 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 9 ggcggataatctgtatttaattaccctttcatatttccggttcatcgctctacataca 66 |||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 78296 ggcggataatctgtatttaattacccttccatatctcaggttcatctctctacataca 78353 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 341 ttcacttggagctcttcttcccccaccatcttttccgagatttctc 386 ||||||| |||||||||||||||| |||||||||||| ||||||| Sbjct: 78640 ttcactttgagctcttcttcccccgccatcttttccggcatttctc 78685
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 9 ggcggataatctgtatttaattaccctttcatatttccggttcatcgctctacataca 66 |||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 21006982 ggcggataatctgtatttaattacccttccatatctcaggttcatctctctacataca 21006925 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 341 ttcacttggagctcttcttcccccaccatcttttccgagatttctc 386 ||||||| |||||||||||||||| |||||||||||| ||||||| Sbjct: 21006638 ttcactttgagctcttcttcccccgccatcttttccggcatttctc 21006593
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 9 ggcggataatctgtatttaattaccctttcatatttccggttcatcgctctacataca 66 |||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 22435333 ggcggataatctgtatttaattacccttccatatctcaggttcatctctctacataca 22435390 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 341 ttcacttggagctcttcttcccccaccatcttttccgagatttctc 386 ||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 22435691 ttcactttgagctcttcttcccccaccatcttttccgggatttctc 22435736
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 9 ggcggataatctgtatttaattaccctttcatatttccggttcatcgctctacataca 66 |||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 21000011 ggcggataatctgtatttaattacccttccatatctcaggttcatctctctacataca 20999954 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 341 ttcacttggagctcttcttcccccaccatcttttccgagatttctc 386 ||||||| |||||||||||||||| |||||||||||| ||||||| Sbjct: 20999667 ttcactttgagctcttcttcccccgccatcttttccggcatttctc 20999622
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 9 ggcggataatctgtatttaattaccctttcatatttccggttcatcgctctacataca 66 |||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 96400 ggcggataatctgtatttaattacccttccatatctcaggttcatctctctacataca 96457 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 341 ttcacttggagctcttcttcccccaccatcttttccgagatttctc 386 ||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 96758 ttcactttgagctcttcttcccccaccatcttttccgggatttctc 96803
>dbj|AK120271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047M22, full insert sequence Length = 3296 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 9 ggcggataatctgtatttaattaccctttcatatttccggttcatcgctctacataca 66 |||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 3217 ggcggataatctgtatttaattacccttccatatctcaggttcatctctctacataca 3160 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 341 ttcacttggagctcttcttcccccaccatcttttccgagatttctc 386 ||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 2859 ttcactttgagctcttcttcccccaccatcttttccgggatttctc 2814
>dbj|AK104858.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D03, full insert sequence Length = 1552 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 9 ggcggataatctgtatttaattaccctttcatatttccggttcatcgctctacataca 66 |||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 1468 ggcggataatctgtatttaattacccttccatatctcaggttcatctctctacataca 1411 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 341 ttcacttggagctcttcttcccccaccatcttttccgagatttctc 386 ||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 1110 ttcactttgagctcttcttcccccaccatcttttccgggatttctc 1065
>dbj|AK068466.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155K02, full insert sequence Length = 4236 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 9 ggcggataatctgtatttaattaccctttcatatttccggttcatcgctctacataca 66 |||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 4150 ggcggataatctgtatttaattacccttccatatctcaggttcatctctctacataca 4093 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 341 ttcacttggagctcttcttcccccaccatcttttccgagatttctc 386 ||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 3792 ttcactttgagctcttcttcccccaccatcttttccgggatttctc 3747
>gb|AY374513.1| Oryza sativa (japonica cultivar-group) myosin heavy chain class VIII A1 protein (MyoVIIIA1) mRNA, complete cds Length = 4864 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 9 ggcggataatctgtatttaattaccctttcatatttccggttcatcgctctacataca 66 |||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||| Sbjct: 4753 ggcggataatctgtatttaattacccttccatatcccaggttcatctctctacataca 4696 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 341 ttcacttggagctcttcttcccccaccatcttttccgagatttctc 386 ||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 4395 ttcactttgagctcttcttcccccaccatcttttccgggatttctc 4350
>emb|AL954688.9| Zebrafish DNA sequence from clone CH211-212L1 in linkage group 4, complete sequence Length = 210027 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Minus Query: 72 acatacacatacatacactgaca 94 ||||||||||||||||||||||| Sbjct: 60195 acatacacatacatacactgaca 60173
>emb|AL356428.11| Human DNA sequence from clone RP11-343F16 on chromosome 1, complete sequence Length = 174739 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 71 aacatacacatacatacactga 92 |||||||||||||||||||||| Sbjct: 123963 aacatacacatacatacactga 123942
>emb|AL354798.13| Human DNA sequence from clone RP11-756A22 on chromosome 13 Contains the 3' end of a novel gene, the CENJP gene for centromere protein J (LAP, CPAP, LIP1, BM032), 2 novel genes, a pseudogene similar to part of solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (SLC25A15), a TPTE and PTEN homologous inositol lipid phosphatase (TPIP) pseudogene, a 60S ribisomal protein L34 (RPL34) pseudogene and 2 CpG islands, complete sequence Length = 167319 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 74 atacacatacatacactgacaa 95 |||||||||||||||||||||| Sbjct: 70783 atacacatacatacactgacaa 70804
>emb|AL671995.4| Mouse DNA sequence from clone RP23-109E24 on chromosome X, complete sequence Length = 155349 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 17 atctgtatttaattaccctttc 38 |||||||||||||||||||||| Sbjct: 12773 atctgtatttaattaccctttc 12752
>gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, complete sequence Length = 215326 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 acaacatacacatacatacac 89 ||||||||||||||||||||| Sbjct: 129489 acaacatacacatacatacac 129469
>gb|AC122034.3| Mus musculus BAC clone RP24-403M18 from chromosome 15, complete sequence Length = 182891 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 ccttctctcctgccatctgtt 274 ||||||||||||||||||||| Sbjct: 151601 ccttctctcctgccatctgtt 151581
>gb|AC100263.9| Mus musculus chromosome 19, clone RP23-66K19, complete sequence Length = 188435 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 acatacacatacatacactga 92 ||||||||||||||||||||| Sbjct: 166612 acatacacatacatacactga 166592
>gb|AC103645.6| Mus musculus chromosome 19, clone RP24-510J20, complete sequence Length = 209224 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 acatacacatacatacactga 92 ||||||||||||||||||||| Sbjct: 192565 acatacacatacatacactga 192585
>emb|AL360295.7| Human DNA sequence from clone RP11-378I13 on chromosome 1 Contains the 5' end of a novel gene and a novel gene, complete sequence Length = 51173 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 acatacacgacaacatacaca 80 ||||||||||||||||||||| Sbjct: 21484 acatacacgacaacatacaca 21464
>emb|AL390878.6| Human DNA sequence from clone RP11-442F12 on chromosome 13 Contains part of the DIAPH3 gene for diaphanous homolog 3 (Drosophila) and a novel gene, complete sequence Length = 209794 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 actcaaaactagcatacaagt 115 ||||||||||||||||||||| Sbjct: 120509 actcaaaactagcatacaagt 120529
>gb|AC114878.2| Homo sapiens chromosome 1 clone RP11-272L13, complete sequence Length = 194999 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 cacttggagctcttcttcccc 363 ||||||||||||||||||||| Sbjct: 159106 cacttggagctcttcttcccc 159126
>emb|AL663107.13| Mouse DNA sequence from clone RP23-465K20 on chromosome 11 Contains a novel gene (2210415F13Rik), an NADH dehydrogenase (ubiquinone) Fe-S protein 3 (Ndufs3) pseudogene, a novel pseudogene, a novel gene (1810065E05Rik), a novel gene similar to rat solute carrier family 11 member 1 (Slc11a1), a novel gene, the Olfr30 gene for olfactory receptor 30, an olfactory receptor (MOR284-1P) pseudogene, the gene for olfactory receptor MOR284-2 (LOC216774), a novel gene similar to MOR275 (LOC193140), a ribosomal protein L24 (Rpl24) pseudogene, the gene for olfactory receptor MOR275-1, a DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5) pseudogene, an olfactory receptor (MOR275-3) pseudogene and a CpG island, complete sequence Length = 191700 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 333 cttccatgttcacttggagct 353 ||||||||||||||||||||| Sbjct: 102316 cttccatgttcacttggagct 102336
>gb|AC158135.5| Mus musculus chromosome 3, clone RP24-393I15, complete sequence Length = 191562 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 acaacatacacatacatacac 89 ||||||||||||||||||||| Sbjct: 72407 acaacatacacatacatacac 72427
>gb|AC130842.5| Mus musculus BAC clone RP24-448N19 from chromosome 3, complete sequence Length = 184249 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 acaacatacacatacatacac 89 ||||||||||||||||||||| Sbjct: 152266 acaacatacacatacatacac 152246
>dbj|AB162145.1| Homo sapiens DPYD gene for dihydropyrimidine dehydrogenase, promoter region Length = 3019 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 cacttggagctcttcttcccc 363 ||||||||||||||||||||| Sbjct: 1216 cacttggagctcttcttcccc 1196
>emb|BX004838.8| Zebrafish DNA sequence from clone DKEY-29N1 in linkage group 7, complete sequence Length = 226160 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 acaacatacacatacatacac 89 ||||||||||||||||||||| Sbjct: 51148 acaacatacacatacatacac 51168
>dbj|AP005433.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-945C19, complete sequence Length = 146000 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 85 tacactgacaactcaaaactagcat 109 |||||||| |||||||||||||||| Sbjct: 82908 tacactgaaaactcaaaactagcat 82884
>ref|NM_120017.1| Arabidopsis thaliana unknown protein AT4G38560 mRNA, complete cds Length = 1566 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gctctgaccttgtagcttcc 337 |||||||||||||||||||| Sbjct: 1037 gctctgaccttgtagcttcc 1018
>ref|XM_641181.1| Dictyostelium discoideum hypothetical protein (DDB0190549), partial mRNA Length = 3099 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 tctcttcatttgatgcaatt 296 |||||||||||||||||||| Sbjct: 2959 tctcttcatttgatgcaatt 2940
>gb|AC156561.3| Mus musculus BAC clone RP24-264F22 from chromosome 14, complete sequence Length = 170677 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 acacatacatacactgacaa 95 |||||||||||||||||||| Sbjct: 49919 acacatacatacactgacaa 49938
>gb|AC165075.3| Mus musculus BAC clone RP24-465N15 from chromosome 17, complete sequence Length = 180635 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 acacatacatacactgacaa 95 |||||||||||||||||||| Sbjct: 54791 acacatacatacactgacaa 54810
>gb|AC115301.7| Mus musculus BAC clone RP24-83E2 from chromosome 7, complete sequence Length = 175603 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 aacatacacatacatacactgaca 94 |||| ||||||||||||||||||| Sbjct: 98429 aacacacacatacatacactgaca 98406
>ref|NM_004588.3| Homo sapiens sodium channel, voltage-gated, type II, beta (SCN2B), mRNA Length = 4939 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tctcttgctgtgcctcttgc 140 |||||||||||||||||||| Sbjct: 4480 tctcttgctgtgcctcttgc 4499
>gb|AC183271.3| Pan troglodytes BAC clone CH251-356H14 from chromosome 7, complete sequence Length = 183934 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 caacatacacatacatacac 89 |||||||||||||||||||| Sbjct: 120079 caacatacacatacatacac 120098
>gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome 7, complete sequence Length = 230675 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 aacatacacatacatacactgaca 94 |||| ||||||||||||||||||| Sbjct: 12025 aacacacacatacatacactgaca 12002
>gb|AC079276.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-446B13, complete sequence Length = 205177 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 acatacacatacatacactg 91 |||||||||||||||||||| Sbjct: 119741 acatacacatacatacactg 119760
>gb|AC115954.11| Mus musculus chromosome 16, clone RP24-62P21, complete sequence Length = 205819 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 aacatacacatacatacactgaca 94 ||||||||||||||||||| |||| Sbjct: 1042 aacatacacatacatacacagaca 1065
>gb|AC115766.9| Mus musculus chromosome 1, clone RP23-82I24, complete sequence Length = 225600 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tgaggaaatgctctgacctt 328 |||||||||||||||||||| Sbjct: 194208 tgaggaaatgctctgacctt 194227
>gb|AC121789.2| Mus musculus BAC clone RP23-398C14 from 1, complete sequence Length = 181157 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 388 tcatggctgctgaccttctgaagg 411 ||||||||| |||||||||||||| Sbjct: 17498 tcatggctggtgaccttctgaagg 17475
>gb|AC073107.7| Homo sapiens BAC clone RP11-479O9 from 7, complete sequence Length = 194178 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 caacatacacatacatacac 89 |||||||||||||||||||| Sbjct: 185907 caacatacacatacatacac 185888
>gb|AC100209.13| Mus musculus chromosome 13, clone RP23-59L9, complete sequence Length = 215769 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aacatacacatacatacact 90 |||||||||||||||||||| Sbjct: 203097 aacatacacatacatacact 203078
>gb|AC116484.12| Mus musculus chromosome 16, clone RP23-425F12, complete sequence Length = 206793 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 aacatacacatacatacactgaca 94 ||||||||||||||||||| |||| Sbjct: 144018 aacatacacatacatacacagaca 144041
>emb|AL590392.5| Human DNA sequence from clone RP11-453D21 on chromosome 6, complete sequence Length = 104011 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 actagcatacaagtacagat 121 |||||||||||||||||||| Sbjct: 33667 actagcatacaagtacagat 33686
>emb|AL445495.5| Human DNA sequence from clone RP11-349P17 on chromosome 9 Contains part of the GPR51 gene for G protein-coupled receptor 51 (HG20, GABBR2, GPRC3B, GABABR2) and a CpG island, complete sequence Length = 155837 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aacatacacatacatacact 90 |||||||||||||||||||| Sbjct: 108499 aacatacacatacatacact 108480
>emb|AL157814.14| Human DNA sequence from clone RP11-285E18 on chromosome 13q22.1-22.3 Contains a novel gene, complete sequence Length = 111350 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aacatacacatacatacact 90 |||||||||||||||||||| Sbjct: 48781 aacatacacatacatacact 48762
>gb|AC091503.2| Rattus norvegicus strain Brown Norway clone RP31-446A15, complete sequence Length = 178963 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 caacatacacatacatacac 89 |||||||||||||||||||| Sbjct: 63452 caacatacacatacatacac 63433
>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89 Length = 199789 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gctctgaccttgtagcttcc 337 |||||||||||||||||||| Sbjct: 139604 gctctgaccttgtagcttcc 139585
>emb|AL731817.11| Mouse DNA sequence from clone RP23-3J16 on chromosome 11 Contains a novel gene and the 3' end of a novel gene, complete sequence Length = 103582 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 acaacatacacatacataca 88 |||||||||||||||||||| Sbjct: 57366 acaacatacacatacataca 57385
>gb|AC108751.10| Homo sapiens 3 BAC RP11-278L15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131894 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aacatacacatacatacact 90 |||||||||||||||||||| Sbjct: 2570 aacatacacatacatacact 2551
>emb|CR860366.1| Pongo pygmaeus mRNA; cDNA DKFZp459O0412 (from clone DKFZp459O0412) Length = 1757 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tctcttgctgtgcctcttgc 140 |||||||||||||||||||| Sbjct: 1314 tctcttgctgtgcctcttgc 1333
>gb|AC164568.1| Mus musculus BAC clone RP23-7A23 from chromosome 14, complete sequence Length = 227675 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 acatacacatacatacactgacaa 95 ||||||||||||||||||| |||| Sbjct: 77952 acatacacatacatacacttacaa 77975
>dbj|AB089137.1| Gorilla gorilla gene for CMP-N-acetylneuraminic acid hydroxylase, partial cds, Alu repeat region Length = 8299 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 tttctgacactcccaaaaaa 165 |||||||||||||||||||| Sbjct: 6821 tttctgacactcccaaaaaa 6840
>gb|AC122707.2| Homo sapiens chromosome 5 clone RP11-158J3, complete sequence Length = 180483 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aacatacacatacatacact 90 |||||||||||||||||||| Sbjct: 161702 aacatacacatacatacact 161683
>emb|CR625871.1| full-length cDNA clone CS0DC001YL16 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 918 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tctcttgctgtgcctcttgc 140 |||||||||||||||||||| Sbjct: 504 tctcttgctgtgcctcttgc 523
>dbj|AK094643.1| Homo sapiens cDNA FLJ37324 fis, clone BRAMY2018279 Length = 2844 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tctcttgctgtgcctcttgc 140 |||||||||||||||||||| Sbjct: 2403 tctcttgctgtgcctcttgc 2422
>dbj|AK090729.1| Homo sapiens cDNA FLJ33410 fis, clone BRACE2012653 Length = 2007 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tctcttgctgtgcctcttgc 140 |||||||||||||||||||| Sbjct: 1572 tctcttgctgtgcctcttgc 1591
>gb|AC022163.5| Homo sapiens chromosome 5 clone RP11-454F19, complete sequence Length = 165675 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aacatacacatacatacact 90 |||||||||||||||||||| Sbjct: 36188 aacatacacatacatacact 36169
>gb|AC020939.7| Homo sapiens chromosome 5 clone CTD-2311D2, complete sequence Length = 112595 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aacatacacatacatacact 90 |||||||||||||||||||| Sbjct: 111226 aacatacacatacatacact 111245
>gb|AC154748.2| Mus musculus BAC clone RP23-116P6 from chromosome 13, complete sequence Length = 203908 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aacatacacatacatacact 90 |||||||||||||||||||| Sbjct: 20065 aacatacacatacatacact 20046
>gb|AC008965.6| Homo sapiens chromosome 5 clone CTD-2364L17, complete sequence Length = 139939 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aacatacacatacatacact 90 |||||||||||||||||||| Sbjct: 33763 aacatacacatacatacact 33782
>gb|AC026440.4|AC026440 Homo sapiens chromosome 5 clone CTD-2269F5, complete sequence Length = 103115 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 acaacatacacatacataca 88 |||||||||||||||||||| Sbjct: 22775 acaacatacacatacataca 22756
>gb|BT023434.1| Arabidopsis thaliana At4g38560 gene, complete cds Length = 1650 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gctctgaccttgtagcttcc 337 |||||||||||||||||||| Sbjct: 1057 gctctgaccttgtagcttcc 1038
>gb|AC154320.2| Mus musculus BAC clone RP23-308E16 from chromosome 13, complete sequence Length = 202134 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 acaacatacacatacataca 88 |||||||||||||||||||| Sbjct: 67745 acaacatacacatacataca 67764
>gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence Length = 107740 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gctctgaccttgtagcttcc 337 |||||||||||||||||||| Sbjct: 25923 gctctgaccttgtagcttcc 25942
>gb|BC059256.1| Mus musculus Notch gene homolog 2 (Drosophila), mRNA (cDNA clone IMAGE:6406444), complete cds Length = 4616 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 acatacacatacatacactg 91 |||||||||||||||||||| Sbjct: 78 acatacacatacatacactg 59
>emb|AL844482.6| Mouse DNA sequence from clone RP23-81A18 on chromosome X, complete sequence Length = 141997 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 acacatacatacactgacaa 95 |||||||||||||||||||| Sbjct: 113751 acacatacatacactgacaa 113770
>dbj|AP002800.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-832A4, complete sequence Length = 215441 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 tctcttgctgtgcctcttgc 140 |||||||||||||||||||| Sbjct: 85845 tctcttgctgtgcctcttgc 85826
>emb|Z83744.1|CEC06A12 Caenorhabditis elegans Cosmid C06A12, complete sequence Length = 39774 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tcccaaaaaactggacgcgc 175 |||||||||||||||||||| Sbjct: 18216 tcccaaaaaactggacgcgc 18235
>emb|AL832780.1|HSM804091 Homo sapiens mRNA; cDNA DKFZp686J037 (from clone DKFZp686J037) Length = 7208 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aacatacacatacatacact 90 |||||||||||||||||||| Sbjct: 1461 aacatacacatacatacact 1480
>gb|AC115876.18| Mus musculus chromosome 1, clone RP24-356G6, complete sequence Length = 163698 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 388 tcatggctgctgaccttctgaagg 411 ||||||||| |||||||||||||| Sbjct: 160022 tcatggctggtgaccttctgaagg 159999
>emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, BAC clone F20M13 (ESSA project) Length = 91938 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gctctgaccttgtagcttcc 337 |||||||||||||||||||| Sbjct: 40545 gctctgaccttgtagcttcc 40526
>emb|AL672074.19| Mouse DNA sequence from clone RP23-404I18 on chromosome X, complete sequence Length = 171593 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 cttcttcccccaccatcttt 373 |||||||||||||||||||| Sbjct: 69185 cttcttcccccaccatcttt 69204
>gb|AC134455.3| Mus musculus BAC clone RP23-294B15 from 14, complete sequence Length = 186427 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 acacatacatacactgacaa 95 |||||||||||||||||||| Sbjct: 130145 acacatacatacactgacaa 130164
>emb|AL954334.4| Mouse DNA sequence from clone RP24-93B5 on chromosome 4, complete sequence Length = 125201 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 acacatacatacactgacaa 95 |||||||||||||||||||| Sbjct: 60940 acacatacatacactgacaa 60921
>emb|AL606987.11| Mouse DNA sequence from clone RP23-383I4 on chromosome 4, complete sequence Length = 212647 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 acacatacatacactgacaa 95 |||||||||||||||||||| Sbjct: 160694 acacatacatacactgacaa 160713
>emb|AL606910.14| Mouse DNA sequence from clone RP23-282C23 on chromosome 4, complete sequence Length = 185210 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 acacatacatacactgacaa 95 |||||||||||||||||||| Sbjct: 90724 acacatacatacactgacaa 90743 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,219,412 Number of Sequences: 3902068 Number of extensions: 4219412 Number of successful extensions: 135695 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 135411 Number of HSP's gapped (non-prelim): 284 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
