Clone Name | rbastl39f11 |
---|---|
Clone Library Name | barley_pub |
>CCG1_MOUSE (O70578) Voltage-dependent calcium channel gamma-1 subunit| (Dihydropyridine-sensitive L-type, skeletal muscle calcium channel gamma subunit) Length = 223 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -1 Query: 336 IKHYINWSAACKLTSIHLVSKGILLLVRFSI 244 I+HY +WS AC + L+ G L L+ FS+ Sbjct: 175 IEHYYSWSFACACAAFILLFLGGLFLLLFSL 205
>ISPZ_HAEIN (P43810) Probable intracellular septation protein| Length = 185 Score = 28.9 bits (63), Expect = 3.1 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Frame = -1 Query: 345 FHNIKHYINWSAACKLTSIHLVSKGILLLVRFSIGFYSPACASFLN*QVRLSSIPRKC-- 172 + N Y+ W K+T I+ + +LL+ +F F +P L +++L P K Sbjct: 67 YFNEIRYLQW----KVTIINGLFAIVLLVAQFQ--FKTPLIKKLLGKELQL---PEKAWN 117 Query: 171 NLSPTWAVNQILCIFFLTYISRDLS 97 L+ WA+ I+C+ YIS ++S Sbjct: 118 TLNFGWAIFFIICMLVNIYISHNMS 142
>VPP2_HUMAN (Q9Y487) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 2 (V-ATPase 116-kDa isoform a2) (TJ6) Length = 856 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = -3 Query: 193 FFNTQKM*SFTYVGC*SNIVHLFFNLYIA*FVK*VEFPKFHFYL*AQPQLKFWLIA*DYL 14 F N+ KM +G I+H+ F + + F KF+ YL + P+L F L YL Sbjct: 546 FLNSFKMKMSVILG----IIHMTFGVILGIFNHLHFRKKFNIYLVSIPELLFMLCIFGYL 601 Query: 13 VFI 5 +F+ Sbjct: 602 IFM 604
>NH174_CAEEL (O17748) Nuclear hormone receptor family member nhr-174| Length = 382 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 200 CGFLQYPENVIFHLRGLLIKYCASFF 123 C ++P NV H GL+ CA+FF Sbjct: 65 CPVCEFPSNVELHFGGLVCGACAAFF 90
>Y1923_AQUAE (O67752) Hypothetical protein aq_1923 precursor| Length = 296 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +2 Query: 35 PKFKLWLSLQIKMKFREFHLLDKSRD 112 PKF L++S + K K +EFHL S D Sbjct: 117 PKFNLFVSYEAKPKEKEFHLRSLSLD 142
>NHR77_CAEEL (O02316) Nuclear hormone receptor family member nhr-77| Length = 362 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 200 CGFLQYPENVIFHLRGLLIKYCASFF 123 C ++P NV H GL+ CA+FF Sbjct: 11 CPVCEFPSNVELHFGGLVCGACAAFF 36
>GPC6A_CARAU (Q9PW88) G-protein coupled receptor family C group 6 member A| precursor (Odorant receptor 5.24) Length = 877 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/44 (27%), Positives = 22/44 (50%) Frame = -1 Query: 366 NSHLQKIFHNIKHYINWSAACKLTSIHLVSKGILLLVRFSIGFY 235 N++ K + Y W++ + + L + GILLL+ S F+ Sbjct: 546 NANSSKCYPKFYEYFEWNSGFAIALLTLAALGILLLISMSALFF 589
>SYS1_YEAST (P41544) Protein SYS1| Length = 203 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%) Frame = -1 Query: 171 NLSPTWAVNQILCIFFLTYISRDLSSRW------NSLNFIFI 64 ++S W ++ ++C+FFLT I W +++NFI + Sbjct: 81 SISLLWLLDSLICVFFLTVIVGRSKLAWDFAITIHAINFIVV 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,605,024 Number of Sequences: 219361 Number of extensions: 1062713 Number of successful extensions: 1571 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1555 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1571 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)