ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCG1_MOUSE (O70578) Voltage-dependent calcium channel gamma-1 su... 29 2.3
2ISPZ_HAEIN (P43810) Probable intracellular septation protein 29 3.1
3VPP2_HUMAN (Q9Y487) Vacuolar proton translocating ATPase 116 kDa... 28 4.0
4NH174_CAEEL (O17748) Nuclear hormone receptor family member nhr-174 28 4.0
5Y1923_AQUAE (O67752) Hypothetical protein aq_1923 precursor 28 4.0
6NHR77_CAEEL (O02316) Nuclear hormone receptor family member nhr-77 28 4.0
7GPC6A_CARAU (Q9PW88) G-protein coupled receptor family C group 6... 28 5.2
8SYS1_YEAST (P41544) Protein SYS1 28 6.8

>CCG1_MOUSE (O70578) Voltage-dependent calcium channel gamma-1 subunit|
           (Dihydropyridine-sensitive L-type, skeletal muscle
           calcium channel gamma subunit)
          Length = 223

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 336 IKHYINWSAACKLTSIHLVSKGILLLVRFSI 244
           I+HY +WS AC   +  L+  G L L+ FS+
Sbjct: 175 IEHYYSWSFACACAAFILLFLGGLFLLLFSL 205



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>ISPZ_HAEIN (P43810) Probable intracellular septation protein|
          Length = 185

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = -1

Query: 345 FHNIKHYINWSAACKLTSIHLVSKGILLLVRFSIGFYSPACASFLN*QVRLSSIPRKC-- 172
           + N   Y+ W    K+T I+ +   +LL+ +F   F +P     L  +++L   P K   
Sbjct: 67  YFNEIRYLQW----KVTIINGLFAIVLLVAQFQ--FKTPLIKKLLGKELQL---PEKAWN 117

Query: 171 NLSPTWAVNQILCIFFLTYISRDLS 97
            L+  WA+  I+C+    YIS ++S
Sbjct: 118 TLNFGWAIFFIICMLVNIYISHNMS 142



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>VPP2_HUMAN (Q9Y487) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 2 (V-ATPase 116-kDa isoform a2) (TJ6)
          Length = 856

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -3

Query: 193 FFNTQKM*SFTYVGC*SNIVHLFFNLYIA*FVK*VEFPKFHFYL*AQPQLKFWLIA*DYL 14
           F N+ KM     +G    I+H+ F + +  F       KF+ YL + P+L F L    YL
Sbjct: 546 FLNSFKMKMSVILG----IIHMTFGVILGIFNHLHFRKKFNIYLVSIPELLFMLCIFGYL 601

Query: 13  VFI 5
           +F+
Sbjct: 602 IFM 604



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>NH174_CAEEL (O17748) Nuclear hormone receptor family member nhr-174|
          Length = 382

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 200 CGFLQYPENVIFHLRGLLIKYCASFF 123
           C   ++P NV  H  GL+   CA+FF
Sbjct: 65  CPVCEFPSNVELHFGGLVCGACAAFF 90



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>Y1923_AQUAE (O67752) Hypothetical protein aq_1923 precursor|
          Length = 296

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 35  PKFKLWLSLQIKMKFREFHLLDKSRD 112
           PKF L++S + K K +EFHL   S D
Sbjct: 117 PKFNLFVSYEAKPKEKEFHLRSLSLD 142



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>NHR77_CAEEL (O02316) Nuclear hormone receptor family member nhr-77|
          Length = 362

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 200 CGFLQYPENVIFHLRGLLIKYCASFF 123
           C   ++P NV  H  GL+   CA+FF
Sbjct: 11  CPVCEFPSNVELHFGGLVCGACAAFF 36



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>GPC6A_CARAU (Q9PW88) G-protein coupled receptor family C group 6 member A|
           precursor (Odorant receptor 5.24)
          Length = 877

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 366 NSHLQKIFHNIKHYINWSAACKLTSIHLVSKGILLLVRFSIGFY 235
           N++  K +     Y  W++   +  + L + GILLL+  S  F+
Sbjct: 546 NANSSKCYPKFYEYFEWNSGFAIALLTLAALGILLLISMSALFF 589



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>SYS1_YEAST (P41544) Protein SYS1|
          Length = 203

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -1

Query: 171 NLSPTWAVNQILCIFFLTYISRDLSSRW------NSLNFIFI 64
           ++S  W ++ ++C+FFLT I       W      +++NFI +
Sbjct: 81  SISLLWLLDSLICVFFLTVIVGRSKLAWDFAITIHAINFIVV 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,605,024
Number of Sequences: 219361
Number of extensions: 1062713
Number of successful extensions: 1571
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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