>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 285      aatggatgctcgtcaatttacaagctgca 313
                |||||| ||||||||||||||||||||||
Sbjct: 12443255 aatggaagctcgtcaatttacaagctgca 12443227

>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14,
              complete sequence
          Length = 132560

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 285    aatggatgctcgtcaatttacaagctgca 313
              |||||| ||||||||||||||||||||||
Sbjct: 100937 aatggaagctcgtcaatttacaagctgca 100909

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 285      aatggatgctcgtcaatttacaagctgca 313
                |||||| ||||||||||||||||||||||
Sbjct: 12440018 aatggaagctcgtcaatttacaagctgca 12439990

>dbj|AK068503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153C08, full
            insert sequence
          Length = 3677

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 285  aatggatgctcgtcaatttacaagctgca 313
            |||||| ||||||||||||||||||||||
Sbjct: 3453 aatggaagctcgtcaatttacaagctgca 3425

>gb|AC110102.6| Rattus norvegicus 4 BAC CH230-209C7 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 219273

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 168    gattacattttctgggtattga 189
              ||||||||||||||||||||||
Sbjct: 159657 gattacattttctgggtattga 159636

>gb|AC087102.3| Rattus norvegicus strain Brown Norway clone RP31-331N5, complete
             sequence
          Length = 151673

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 168   gattacattttctgggtattga 189
             ||||||||||||||||||||||
Sbjct: 77271 gattacattttctgggtattga 77292

>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 168    gattacattttctgggtattga 189
              ||||||||||||||||||||||
Sbjct: 283519 gattacattttctgggtattga 283540

>gb|AF286887.4| Homo sapiens chromosome 8 clone RP11-206N20 map q12.1, complete sequence
          Length = 192948

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 60     tacaaataaaaatgaaattta 80
              |||||||||||||||||||||
Sbjct: 168922 tacaaataaaaatgaaattta 168942

>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 57      gcttacaaataaaaatgaaat 77
               |||||||||||||||||||||
Sbjct: 1647475 gcttacaaataaaaatgaaat 1647495

>ref|XM_668516.1| Plasmodium berghei strain ANKA hypothetical protein (PB000553.02.0)
           partial mRNA
          Length = 852

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 59  ttacaaataaaaatgaaattt 79
           |||||||||||||||||||||
Sbjct: 172 ttacaaataaaaatgaaattt 152

>gb|AC107960.3| Homo sapiens chromosome 8, clone RP11-983C19, complete sequence
          Length = 180854

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 56     agcttacaaataaaaatgaaa 76
              |||||||||||||||||||||
Sbjct: 157612 agcttacaaataaaaatgaaa 157632

>gb|AC027698.5| Homo sapiens chromosome 8, clone RP11-648L3, complete sequence
          Length = 97695

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 60    tacaaataaaaatgaaattta 80
             |||||||||||||||||||||
Sbjct: 38522 tacaaataaaaatgaaattta 38502

>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 59     ttacaaataaaaatgaaattt 79
              |||||||||||||||||||||
Sbjct: 822742 ttacaaataaaaatgaaattt 822722

>gb|AC009457.8|AC009457 Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
           BACR25A06, complete sequence
          Length = 170163

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 attgaagaaagccgcacttgc 205
           |||||||||||||||||||||
Sbjct: 528 attgaagaaagccgcacttgc 548

>gb|AC005721.3|AC005721 Drosophila melanogaster, chromosome 3R, region 88D8-88E1, BAC clone
              BACR48E23, complete sequence
          Length = 203183

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 185    attgaagaaagccgcacttgc 205
              |||||||||||||||||||||
Sbjct: 140736 attgaagaaagccgcacttgc 140756

>gb|AC021945.14| Homo sapiens chromosome 8, clone RP11-85I17, complete sequence
          Length = 108780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 56   agcttacaaataaaaatgaaa 76
            |||||||||||||||||||||
Sbjct: 4863 agcttacaaataaaaatgaaa 4883

>gb|AE003707.2| Drosophila melanogaster chromosome 3R, section 45 of 118 of the
            complete sequence
          Length = 228284

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 185  attgaagaaagccgcacttgc 205
            |||||||||||||||||||||
Sbjct: 6369 attgaagaaagccgcacttgc 6389

>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 300     atttacaagctgcagaccaa 319
               ||||||||||||||||||||
Sbjct: 3280524 atttacaagctgcagaccaa 3280505

>gb|AC115063.8| Mus musculus chromosome 1, clone RP24-400H18, complete sequence
          Length = 192133

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 59     ttacaaataaaaatgaaatttagg 82
              ||||| ||||||||||||||||||
Sbjct: 179357 ttacatataaaaatgaaatttagg 179380

>gb|AY732221.1| Apis cerana MRJP6-like protein (MRJP6) gene, partial cds
          Length = 848

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  ttacaaataaaaatgaaatt 78
           ||||||||||||||||||||
Sbjct: 613 ttacaaataaaaatgaaatt 632

>gb|AC122298.3| Mus musculus BAC clone RP23-269A11 from 12, complete sequence
          Length = 151332

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    acattttctgggtattgaag 191
              ||||||||||||||||||||
Sbjct: 145729 acattttctgggtattgaag 145748

>ref|XM_774519.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_81_139637_136254) partial mRNA
          Length = 3384

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 338 ttgtggaagattttctgtagatga 361
           ||||||||||||||||||| ||||
Sbjct: 368 ttgtggaagattttctgtacatga 391

>ref|XM_725270.1| Plasmodium yoelii yoelii str. 17XNL erythrocyte binding protein
            (PY02480) partial mRNA
          Length = 1494

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   ttacaaataaaaatgaaatt 78
            ||||||||||||||||||||
Sbjct: 1201 ttacaaataaaaatgaaatt 1220

>ref|XM_734306.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000704.04.0)
           partial mRNA
          Length = 1041

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  ttacaaataaaaatgaaatt 78
           ||||||||||||||||||||
Sbjct: 748 ttacaaataaaaatgaaatt 767

>ref|XM_670548.1| Plasmodium berghei strain ANKA hypothetical protein (PB001112.01.0)
           partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  ttacaaataaaaatgaaatt 78
           ||||||||||||||||||||
Sbjct: 238 ttacaaataaaaatgaaatt 257

>ref|XM_675154.1| Plasmodium berghei strain ANKA hypothetical protein (PB000881.02.0)
            partial mRNA
          Length = 2304

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   ttacaaataaaaatgaaatt 78
            ||||||||||||||||||||
Sbjct: 2204 ttacaaataaaaatgaaatt 2223

>gb|AC117599.14| Mus musculus chromosome 1, clone RP23-426D21, complete sequence
          Length = 195683

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 59    ttacaaataaaaatgaaatttagg 82
             ||||| ||||||||||||||||||
Sbjct: 58304 ttacatataaaaatgaaatttagg 58327

>emb|AL138880.14| Human DNA sequence from clone RP11-491H9 on chromosome 6 Contains part
             of the SUPT3H gene for suppressor of Ty 3 homolog (S.
             cerevisiae), a novel pseudogene and a pseudogene similar
             to part of poly(rC) binding protein 3 (PCBP3), complete
             sequence
          Length = 165454

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    caaataaaaatgaaatttag 81
             ||||||||||||||||||||
Sbjct: 23391 caaataaaaatgaaatttag 23410

>emb|AL136094.13| Human DNA sequence from clone RP3-527B10 on chromosome 6q25.1-25.3
             Contains a high mobility group (nonhistone chromosomal)
             protein 4 (HMG4) pseudogene, complete sequence
          Length = 156667

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   cattttctgggtattgaaga 192
             ||||||||||||||||||||
Sbjct: 70724 cattttctgggtattgaaga 70743

>gb|AC159625.2| Mus musculus BAC clone RP24-262L7 from chromosome 12, complete sequence
          Length = 189979

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 341    tggaagattttctgtagatg 360
              ||||||||||||||||||||
Sbjct: 177078 tggaagattttctgtagatg 177097

>gb|AC140285.4| Mus musculus BAC clone RP24-559A5 from chromosome 12, complete sequence
          Length = 170917

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   acattttctgggtattgaag 191
             ||||||||||||||||||||
Sbjct: 37590 acattttctgggtattgaag 37609

>gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome
          Length = 791654

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 62     caaataaaaatgaaatttagggaa 85
              ||||||||||||||||||| ||||
Sbjct: 263046 caaataaaaatgaaatttatggaa 263069

>dbj|AB111054.1| Oncorhynchus masou mRNA for c-Fos protein, complete cds
          Length = 1864

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 61   acaaataaaaatgaaattta 80
            ||||||||||||||||||||
Sbjct: 1826 acaaataaaaatgaaattta 1845

>gb|AC161242.2| Mus musculus BAC clone RP24-200E4 from chromosome 12, complete sequence
          Length = 179665

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   tggaagattttctgtagatg 360
             ||||||||||||||||||||
Sbjct: 95063 tggaagattttctgtagatg 95082

>gb|AC027541.12| Homo sapiens chromosome 8, clone RP11-324F11, complete sequence
          Length = 164299

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    caaataaaaatgaaatttag 81
             ||||||||||||||||||||
Sbjct: 40509 caaataaaaatgaaatttag 40490


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,531,530
Number of Sequences: 3902068
Number of extensions: 4531530
Number of successful extensions: 102187
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102000
Number of HSP's gapped (non-prelim): 187
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)