ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479318.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-05
2ref|XM_506511.1| PREDICTED Oryza sativa (japonica cultivar-group... 58 2e-05
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
5dbj|AP003832.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
6dbj|AK101483.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
7dbj|AK066726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
8gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
10ref|XM_800066.1| Trypanosoma cruzi strain CL Brener hypothetical... 46 0.093
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
12dbj|AP003536.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
13dbj|AP004359.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
14gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.5
15gb|AC007129.4| Homo sapiens PAC clone RP5-994I4 from 7, complete... 42 1.5
16gb|AC124301.6| Homo sapiens chromosome 11, clone RP11-358H18, co... 42 1.5
17dbj|AB046020.1| Macaca fascicularis brain cDNA, clone:QccE-16176... 42 1.5
18emb|AL805977.2| Human DNA sequence from clone RP11-491O20 on chr... 42 1.5
19gb|BC098734.1| Rattus norvegicus similar to transcription factor... 40 5.8
20gb|AY779569.1| Bubalus bubalis clone BBMS120 microsatellite sequ... 40 5.8
21gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete seq... 40 5.8
22gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole b... 40 5.8
23gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 5.8
24gb|AF332093.1|AF332093 White spot syndrome virus, complete genome 40 5.8
25ref|NM_001034953.1| Rattus norvegicus similar to transcription f... 40 5.8
26gb|AF369029.2| White spot syndrome virus, complete genome 40 5.8
27dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.8
28gb|AF440570.1| Shrimp white spot syndrome virus, complete genome 40 5.8
29gb|AF137217.1|AF137217 Acipenser sp. mixed lineage leukemia-like... 40 5.8
30emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC... 40 5.8 
>ref|XM_479318.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2990

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 108/133 (81%), Gaps = 6/133 (4%)
 Strand = Plus / Minus

                                                                        
Query: 288  tcctccctgctctccgcggctctcttgccaagctcgccaaacacggcttcagggacagcc 347
            ||||||||| |||| || ||||||||||| ||||| |||||||| ||  | || |||  |
Sbjct: 2774 tcctccctgttctctgcagctctcttgccgagctctccaaacaccgcagcgggaacactc 2715

                                                                        
Query: 348  ctctccgcgatctggacatcg---tcctcctcgtcactctcttcatcaggcagctcgatg 404
             ||||||| || |||||||||   ||||||||||| |||   ||||| |||||||| |||
Sbjct: 2714 ttctccgcaatttggacatcgtcttcctcctcgtcgctc---tcatcgggcagctcaatg 2658

                         
Query: 405  tcctcgttgttag 417
            ||||| |||||||
Sbjct: 2657 tcctcattgttag 2645



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 217  attgacgccttcgcttaattctctcgagagcgcccagctgct 258
            ||||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 2842 attgacgccttcgcttaatcctctcaagggcgccaagctgct 2801
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>ref|XM_506511.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1458_B07.103 mRNA
          Length = 3057

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 108/133 (81%), Gaps = 6/133 (4%)
 Strand = Plus / Minus

                                                                        
Query: 288  tcctccctgctctccgcggctctcttgccaagctcgccaaacacggcttcagggacagcc 347
            ||||||||| |||| || ||||||||||| ||||| |||||||| ||  | || |||  |
Sbjct: 2776 tcctccctgttctctgcagctctcttgccgagctctccaaacaccgcagcgggaacactc 2717

                                                                        
Query: 348  ctctccgcgatctggacatcg---tcctcctcgtcactctcttcatcaggcagctcgatg 404
             ||||||| || |||||||||   ||||||||||| |||   ||||| |||||||| |||
Sbjct: 2716 ttctccgcaatttggacatcgtcttcctcctcgtcgctc---tcatcgggcagctcaatg 2660

                         
Query: 405  tcctcgttgttag 417
            ||||| |||||||
Sbjct: 2659 tcctcattgttag 2647



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 217  attgacgccttcgcttaattctctcgagagcgcccagctgct 258
            ||||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 2844 attgacgccttcgcttaatcctctcaagggcgccaagctgct 2803
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 108/133 (81%), Gaps = 6/133 (4%)
 Strand = Plus / Plus

                                                                            
Query: 288      tcctccctgctctccgcggctctcttgccaagctcgccaaacacggcttcagggacagcc 347
                ||||||||| |||| || ||||||||||| ||||| |||||||| ||  | || |||  |
Sbjct: 26766148 tcctccctgttctctgcagctctcttgccgagctctccaaacaccgcagcgggaacactc 26766207

                                                                            
Query: 348      ctctccgcgatctggacatcg---tcctcctcgtcactctcttcatcaggcagctcgatg 404
                 ||||||| || |||||||||   ||||||||||| |||   ||||| |||||||| |||
Sbjct: 26766208 ttctccgcaatttggacatcgtcttcctcctcgtcgctc---tcatcgggcagctcaatg 26766264

                             
Query: 405      tcctcgttgttag 417
                ||||| |||||||
Sbjct: 26766265 tcctcattgttag 26766277



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 217      attgacgccttcgcttaattctctcgagagcgcccagctgct 258
                ||||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 26766080 attgacgccttcgcttaatcctctcaagggcgccaagctgct 26766121
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>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1003_C06
          Length = 143168

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 108/133 (81%), Gaps = 6/133 (4%)
 Strand = Plus / Plus

                                                                          
Query: 288    tcctccctgctctccgcggctctcttgccaagctcgccaaacacggcttcagggacagcc 347
              ||||||||| |||| || ||||||||||| ||||| |||||||| ||  | || |||  |
Sbjct: 113005 tcctccctgttctctgcagctctcttgccgagctctccaaacaccgcagcgggaacactc 113064

                                                                          
Query: 348    ctctccgcgatctggacatcg---tcctcctcgtcactctcttcatcaggcagctcgatg 404
               ||||||| || |||||||||   ||||||||||| |||   ||||| |||||||| |||
Sbjct: 113065 ttctccgcaatttggacatcgtcttcctcctcgtcgctc---tcatcgggcagctcaatg 113121

                           
Query: 405    tcctcgttgttag 417
              ||||| |||||||
Sbjct: 113122 tcctcattgttag 113134



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 217    attgacgccttcgcttaattctctcgagagcgcccagctgct 258
              ||||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 112937 attgacgccttcgcttaatcctctcaagggcgccaagctgct 112978
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>dbj|AP003832.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1458_B07
          Length = 99415

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 108/133 (81%), Gaps = 6/133 (4%)
 Strand = Plus / Plus

                                                                         
Query: 288   tcctccctgctctccgcggctctcttgccaagctcgccaaacacggcttcagggacagcc 347
             ||||||||| |||| || ||||||||||| ||||| |||||||| ||  | || |||  |
Sbjct: 12322 tcctccctgttctctgcagctctcttgccgagctctccaaacaccgcagcgggaacactc 12381

                                                                         
Query: 348   ctctccgcgatctggacatcg---tcctcctcgtcactctcttcatcaggcagctcgatg 404
              ||||||| || |||||||||   ||||||||||| |||   ||||| |||||||| |||
Sbjct: 12382 ttctccgcaatttggacatcgtcttcctcctcgtcgctc---tcatcgggcagctcaatg 12438

                          
Query: 405   tcctcgttgttag 417
             ||||| |||||||
Sbjct: 12439 tcctcattgttag 12451



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 217   attgacgccttcgcttaattctctcgagagcgcccagctgct 258
             ||||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 12254 attgacgccttcgcttaatcctctcaagggcgccaagctgct 12295
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>dbj|AK101483.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041F21, full
            insert sequence
          Length = 2990

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 108/133 (81%), Gaps = 6/133 (4%)
 Strand = Plus / Minus

                                                                        
Query: 288  tcctccctgctctccgcggctctcttgccaagctcgccaaacacggcttcagggacagcc 347
            ||||||||| |||| || ||||||||||| ||||| |||||||| ||  | || |||  |
Sbjct: 2774 tcctccctgttctctgcagctctcttgccgagctctccaaacaccgcagcgggaacactc 2715

                                                                        
Query: 348  ctctccgcgatctggacatcg---tcctcctcgtcactctcttcatcaggcagctcgatg 404
             ||||||| || |||||||||   ||||||||||| |||   ||||| |||||||| |||
Sbjct: 2714 ttctccgcaatttggacatcgtcttcctcctcgtcgctc---tcatcgggcagctcaatg 2658

                         
Query: 405  tcctcgttgttag 417
            ||||| |||||||
Sbjct: 2657 tcctcattgttag 2645



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 217  attgacgccttcgcttaattctctcgagagcgcccagctgct 258
            ||||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 2842 attgacgccttcgcttaatcctctcaagggcgccaagctgct 2801
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>dbj|AK066726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K22, full
            insert sequence
          Length = 3056

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 108/133 (81%), Gaps = 6/133 (4%)
 Strand = Plus / Minus

                                                                        
Query: 288  tcctccctgctctccgcggctctcttgccaagctcgccaaacacggcttcagggacagcc 347
            ||||||||| |||| || ||||||||||| ||||| |||||||| ||  | || |||  |
Sbjct: 2775 tcctccctgttctctgcagctctcttgccgagctctccaaacaccgcagcgggaacactc 2716

                                                                        
Query: 348  ctctccgcgatctggacatcg---tcctcctcgtcactctcttcatcaggcagctcgatg 404
             ||||||| || |||||||||   ||||||||||| |||   ||||| |||||||| |||
Sbjct: 2715 ttctccgcaatttggacatcgtcttcctcctcgtcgctc---tcatcgggcagctcaatg 2659

                         
Query: 405  tcctcgttgttag 417
            ||||| |||||||
Sbjct: 2658 tcctcattgttag 2646



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 217  attgacgccttcgcttaattctctcgagagcgcccagctgct 258
            ||||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 2843 attgacgccttcgcttaatcctctcaagggcgccaagctgct 2802
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>gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1378_A04,
             complete sequence
          Length = 103458

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 110/136 (80%), Gaps = 6/136 (4%)
 Strand = Plus / Plus

                                                                         
Query: 288   tcctccctgctctccgcggctctcttgccaagctcgccaaacacggcttcagggacagcc 347
             ||||||||| |||| || ||||| ||||||||||| |||||||| ||  | || |||  |
Sbjct: 33794 tcctccctgttctctgcagctctgttgccaagctctccaaacaccgcagcgggaacactc 33853

                                                                         
Query: 348   ctctccgcgatctggacatcgtc---ctcctcgtcactctcttcatcaggcagctcgatg 404
              ||| ||| || ||| |||||||   ||||||||| |||||   ||||||||||||||| 
Sbjct: 33854 ttcttcgcaatttggtcatcgtcttcctcctcgtcgctctc---atcaggcagctcgata 33910

                             
Query: 405   tcctcgttgttagcag 420
             ||||| ||||||||||
Sbjct: 33911 tcctcattgttagcag 33926



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 217   attgacgccttcgcttaattctctcgagagcgcccagctgc 257
             |||||||||||||||| || ||||| || ||||| ||||||
Sbjct: 33726 attgacgccttcgcttgatcctctcaagggcgccaagctgc 33766
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 110/136 (80%), Gaps = 6/136 (4%)
 Strand = Plus / Plus

                                                                            
Query: 288      tcctccctgctctccgcggctctcttgccaagctcgccaaacacggcttcagggacagcc 347
                ||||||||| |||| || ||||| ||||||||||| |||||||| ||  | || |||  |
Sbjct: 21018416 tcctccctgttctctgcagctctgttgccaagctctccaaacaccgcagcgggaacactc 21018475

                                                                            
Query: 348      ctctccgcgatctggacatcgtc---ctcctcgtcactctcttcatcaggcagctcgatg 404
                 ||| ||| || ||| |||||||   ||||||||| |||||   ||||||||||||||| 
Sbjct: 21018476 ttcttcgcaatttggtcatcgtcttcctcctcgtcgctctc---atcaggcagctcgata 21018532

                                
Query: 405      tcctcgttgttagcag 420
                ||||| ||||||||||
Sbjct: 21018533 tcctcattgttagcag 21018548



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 217      attgacgccttcgcttaattctctcgagagcgcccagctgc 257
                |||||||||||||||| || ||||| || ||||| ||||||
Sbjct: 21018348 attgacgccttcgcttgatcctctcaagggcgccaagctgc 21018388
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>ref|XM_800066.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053504251.30) partial mRNA
          Length = 2193

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 366  tcgtcctcctcgtcactctcttc 388
            |||||||||||||||||||||||
Sbjct: 1259 tcgtcctcctcgtcactctcttc 1237
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 173      ccaacgacaggcaatggcgtgc 194
                ||||||||||||||||||||||
Sbjct: 15787724 ccaacgacaggcaatggcgtgc 15787745
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>dbj|AP003536.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1096D03
          Length = 184422

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 173   ccaacgacaggcaatggcgtgc 194
             ||||||||||||||||||||||
Sbjct: 15393 ccaacgacaggcaatggcgtgc 15414
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>dbj|AP004359.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1150E06
          Length = 129680

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 173   ccaacgacaggcaatggcgtgc 194
             ||||||||||||||||||||||
Sbjct: 94813 ccaacgacaggcaatggcgtgc 94834
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>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
              sequence
          Length = 1178688

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 251    cagctgctgctcgttgttctc 271
              |||||||||||||||||||||
Sbjct: 871207 cagctgctgctcgttgttctc 871187
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>gb|AC007129.4| Homo sapiens PAC clone RP5-994I4 from 7, complete sequence
          Length = 111103

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 15   tcactaaaaatgatggacacg 35
            |||||||||||||||||||||
Sbjct: 8510 tcactaaaaatgatggacacg 8530
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>gb|AC124301.6| Homo sapiens chromosome 11, clone RP11-358H18, complete sequence
          Length = 145713

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 152   acagctacaacatcattaggc 172
             |||||||||||||||||||||
Sbjct: 99460 acagctacaacatcattaggc 99440
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>dbj|AB046020.1| Macaca fascicularis brain cDNA, clone:QccE-16176, similar to human
            hypothetical protein MGC20983, mRNA, NM_145045.1
          Length = 1543

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 368  gtcctcctcgtcactctcttcatca 392
            ||||||||| |||||||||||||||
Sbjct: 1208 gtcctcctcctcactctcttcatca 1184
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>emb|AL805977.2| Human DNA sequence from clone RP11-491O20 on chromosome 6, complete
             sequence
          Length = 174830

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    tcactaaaaatgatggacacg 35
             |||||||||||||||||||||
Sbjct: 77446 tcactaaaaatgatggacacg 77426
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>gb|BC098734.1| Rattus norvegicus similar to transcription factor RAM2, mRNA (cDNA
           clone MGC:112726 IMAGE:7385105), complete cds
          Length = 2599

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 catcgtcctcctcgtcactc 383
           ||||||||||||||||||||
Sbjct: 401 catcgtcctcctcgtcactc 382
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>gb|AY779569.1| Bubalus bubalis clone BBMS120 microsatellite sequence
          Length = 433

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 285 ctttcctccctgctctccgc 304
           ||||||||||||||||||||
Sbjct: 389 ctttcctccctgctctccgc 370
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>gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete sequence
          Length = 138518

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    aaaatccttgtacaagaaga 120
              ||||||||||||||||||||
Sbjct: 118583 aaaatccttgtacaagaaga 118602
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>gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole biosynthesis gene
             cluster, complete sequence
          Length = 84868

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 350   ctccgcgatctggacatcgtcctcctcg 377
             |||||||||| ||||||||||| |||||
Sbjct: 54260 ctccgcgatccggacatcgtccgcctcg 54287
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 9       aaaatttcactaaaaatgat 28
               ||||||||||||||||||||
Sbjct: 1691730 aaaatttcactaaaaatgat 1691711
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>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome
          Length = 305107

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 369    tcctcctcgtcactctcttcatca 392
              ||||| ||||||||||||||||||
Sbjct: 206602 tcctcatcgtcactctcttcatca 206625
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>ref|NM_001034953.1| Rattus norvegicus similar to transcription factor RAM2 (LOC619566),
           mRNA
          Length = 2599

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 catcgtcctcctcgtcactc 383
           ||||||||||||||||||||
Sbjct: 401 catcgtcctcctcgtcactc 382
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>gb|AF369029.2| White spot syndrome virus, complete genome
          Length = 292967

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 369    tcctcctcgtcactctcttcatca 392
              ||||| ||||||||||||||||||
Sbjct: 255652 tcctcatcgtcactctcttcatca 255675
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 69      acgctgcggatcaacaccag 88
               ||||||||||||||||||||
Sbjct: 2009136 acgctgcggatcaacaccag 2009117
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>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome
          Length = 307287

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 369    tcctcctcgtcactctcttcatca 392
              ||||| ||||||||||||||||||
Sbjct: 241548 tcctcatcgtcactctcttcatca 241571
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>gb|AF137217.1|AF137217 Acipenser sp. mixed lineage leukemia-like protein (Mll) gene,
           partial cds
          Length = 762

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 tcctcctcgtcactctcttc 388
           ||||||||||||||||||||
Sbjct: 371 tcctcctcgtcactctcttc 352
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>emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC gene, disD gene, ORF1,
             ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10,
             ORF11, ORF12, ORF13, ORF14, ORF15, ORF16, ORF17, ORF18 and
             ORF19
          Length = 86080

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 350   ctccgcgatctggacatcgtcctcctcg 377
             |||||||||| ||||||||||| |||||
Sbjct: 54178 ctccgcgatccggacatcgtccgcctcg 54205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,203,242
Number of Sequences: 3902068
Number of extensions: 3203242
Number of successful extensions: 62653
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62490
Number of HSP's gapped (non-prelim): 156
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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