>XIST_MOUSE (P27571) X inactive-specific transcript protein (Fragment)|
          Length = 298

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -2

Query: 292 VCLDIANSIWSVLLCC-NKFIPQRLVGVHCLPEASVPSFFAGVCIFC*PCSVPFVLFMLH 116
           VCL +   ++ +L C  N  +   L    CL         + VC+FC  C +P  +F+LH
Sbjct: 59  VCLCLPCFVYLLLPCVSNSLLHLFLPSFACL-------LLSFVCLFCLQCVLPIPMFLLH 111

Query: 115 ALAVISCEGM 86
              V+SC  +
Sbjct: 112 ---VLSCRAL 118

>IRK1_CAEEL (P52192) Inward rectifier potassium channel irk-1|
          Length = 505

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 360 LSAVYSCMLLPVQLYHTFNHSNKFASTSPTAFGRY--FYAVTNLSLKDWLVSIAFQR 196
           L +VYS  L  V+ +HT  + +++ +T     G      A+  L L+ ++V I F +
Sbjct: 157 LDSVYSSFLFAVETHHTIGYGHRYITTECYLAGAIVCLQAICALLLQSFMVGIVFAK 213

>AKAP3_HUMAN (O75969) A-kinase anchor protein 3 (Protein kinase A-anchoring|
           protein 3) (PRKA3) (A-kinase anchor protein 110 kDa)
           (AKAP 110) (Sperm oocyte-binding protein)
           (Fibrousheathin I) (Fibrous sheath protein of 95 kDa)
           (FSP95)
          Length = 853

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +2

Query: 146 ARSTKNTYPRKKRRYRGLWKAMDTNQSLRDKFVTA*KYRPNAVGDVEANLLEWLKV 313
           AR     +PR+++R+RG  +  D   S+ +  +T   Y  + V D+  ++++ LK+
Sbjct: 254 AREGGRFFPRERKRFRGQERPDDFTASVSEGIMT---YANSVVSDMMVSIMKTLKI 306


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,107,138
Number of Sequences: 219361
Number of extensions: 1365555
Number of successful extensions: 3529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3528
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)