Clone Name | rbastl39f04 |
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Clone Library Name | barley_pub |
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence Length = 84361 Score = 153 bits (77), Expect = 6e-34 Identities = 201/241 (83%), Gaps = 1/241 (0%) Strand = Plus / Minus Query: 230 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 289 |||| |||||||||||||||| | ||| || | ||||| ||||| ||||| ||||||| Sbjct: 60289 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 60230 Query: 290 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 349 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 60229 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 60170 Query: 350 tggcatagaaccctcctaatgctgcgagaacctggggcggtgtgacgtaaagcactatcg 409 || ||||||||||| | |||||||| ||||| ||| | ||||| || || || ||||| | Sbjct: 60169 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 60110 Query: 410 cggctatgaaacagaatagcacaaatatggccgtggcccgaggatccctcca-ctaagca 468 | ||||||| |||||| || |||||||| || |||||||||||||||||||| ||||||| Sbjct: 60109 ctgctatgagacagaagaggacaaatattgctgtggcccgaggatccctccagctaagca 60050 Query: 469 g 469 | Sbjct: 60049 g 60049
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 145 bits (73), Expect = 1e-31 Identities = 200/241 (82%), Gaps = 1/241 (0%) Strand = Plus / Minus Query: 230 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 289 |||| |||||||||||||||| | ||| || | ||||| ||||| ||||| ||||||| Sbjct: 34954907 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 34954848 Query: 290 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 349 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 34954847 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 34954788 Query: 350 tggcatagaaccctcctaatgctgcgagaacctggggcggtgtgacgtaaagcactatcg 409 || ||||||||||| | |||||||| ||||| ||| | ||||| || || || ||||| | Sbjct: 34954787 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 34954728 Query: 410 cggctatgaaacagaatagcacaaatatggccgtggcccgaggatccctcca-ctaagca 468 | ||||||| ||| || || |||||||| || |||||||||||||||||||| ||||||| Sbjct: 34954727 ctgctatgagacaaaagaggacaaatattgctgtggcccgaggatccctccagctaagca 34954668 Query: 469 g 469 | Sbjct: 34954667 g 34954667
>dbj|AK102910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113J04, full insert sequence Length = 3717 Score = 145 bits (73), Expect = 1e-31 Identities = 200/241 (82%), Gaps = 1/241 (0%) Strand = Plus / Minus Query: 230 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 289 |||| |||||||||||||||| | ||| || | ||||| ||||| ||||| ||||||| Sbjct: 3497 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 3438 Query: 290 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 349 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 3437 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 3378 Query: 350 tggcatagaaccctcctaatgctgcgagaacctggggcggtgtgacgtaaagcactatcg 409 || ||||||||||| | |||||||| ||||| ||| | ||||| || || || ||||| | Sbjct: 3377 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 3318 Query: 410 cggctatgaaacagaatagcacaaatatggccgtggcccgaggatccctcca-ctaagca 468 | ||||||| ||| || || |||||||| || |||||||||||||||||||| ||||||| Sbjct: 3317 ctgctatgagacaaaagaggacaaatattgctgtggcccgaggatccctccagctaagca 3258 Query: 469 g 469 | Sbjct: 3257 g 3257
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 145 bits (73), Expect = 1e-31 Identities = 200/241 (82%), Gaps = 1/241 (0%) Strand = Plus / Minus Query: 230 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 289 |||| |||||||||||||||| | ||| || | ||||| ||||| ||||| ||||||| Sbjct: 13959 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 13900 Query: 290 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 349 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 13899 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 13840 Query: 350 tggcatagaaccctcctaatgctgcgagaacctggggcggtgtgacgtaaagcactatcg 409 || ||||||||||| | |||||||| ||||| ||| | ||||| || || || ||||| | Sbjct: 13839 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 13780 Query: 410 cggctatgaaacagaatagcacaaatatggccgtggcccgaggatccctcca-ctaagca 468 | ||||||| ||| || || |||||||| || |||||||||||||||||||| ||||||| Sbjct: 13779 ctgctatgagacaaaagaggacaaatattgctgtggcccgaggatccctccagctaagca 13720 Query: 469 g 469 | Sbjct: 13719 g 13719
>ref|XM_474407.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3036 Score = 139 bits (70), Expect = 9e-30 Identities = 173/206 (83%), Gaps = 1/206 (0%) Strand = Plus / Minus Query: 265 agcatactgtccgtcctcgctggcaaacgcctgaagaagtttaccggcgttgaaggcaac 324 ||||| ||||| ||||| ||||||| || |||||||| || || ||||||||||||||| Sbjct: 3032 agcatgctgtcggtccttgctggcagtcgtctgaagaaattcactggcgttgaaggcaac 2973 Query: 325 ctgtgcctgaaccttgggtgcctcatggcatagaaccctcctaatgctgcgagaacctgg 384 || | |||||||| |||||||||||| ||||||||||| | |||||||| ||||| ||| Sbjct: 2972 ctatatctgaacctcgggtgcctcatgacatagaaccctgccaatgctgcaagaacttgg 2913 Query: 385 ggcggtgtgacgtaaagcactatcgcggctatgaaacagaatagcacaaatatggccgtg 444 | ||||| || || || ||||| || ||||||| ||| || || |||||||| || ||| Sbjct: 2912 agtggtgtaacatacaggactattgctgctatgagacaaaagaggacaaatattgctgtg 2853 Query: 445 gcccgaggatccctcca-ctaagcag 469 ||||||||||||||||| |||||||| Sbjct: 2852 gcccgaggatccctccagctaagcag 2827
>dbj|AK073897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075A06, full insert sequence Length = 3730 Score = 137 bits (69), Expect = 4e-29 Identities = 199/241 (82%), Gaps = 1/241 (0%) Strand = Plus / Minus Query: 230 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 289 |||| |||||||||||||||| | ||| || | ||||| ||||| | ||| ||||||| Sbjct: 3519 acaatgataaggccaccagatggcagctattttatagcatgctgtcggcccttgctggca 3460 Query: 290 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 349 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 3459 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 3400 Query: 350 tggcatagaaccctcctaatgctgcgagaacctggggcggtgtgacgtaaagcactatcg 409 || ||||||||||| | |||||||| ||||| ||| | ||||| || || || ||||| | Sbjct: 3399 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 3340 Query: 410 cggctatgaaacagaatagcacaaatatggccgtggcccgaggatccctcca-ctaagca 468 | ||||||| ||| || || |||||||| || |||||||||||||||||||| ||||||| Sbjct: 3339 ctgctatgagacaaaagaggacaaatattgctgtggcccgaggatccctccagctaagca 3280 Query: 469 g 469 | Sbjct: 3279 g 3279
>gb|AY107337.1| Zea mays PCO064147 mRNA sequence Length = 1264 Score = 127 bits (64), Expect = 4e-26 Identities = 130/152 (85%) Strand = Plus / Minus Query: 220 tctagggattacaacgataaggccaccagatagtagcatcttcacagcatactgtccgtc 279 ||||||||||||||||||||| ||||||| |||| || | || | |||||| ||| ||| Sbjct: 1078 tctagggattacaacgataagaccaccaggtagtggcttatttatagcatagagtcagtc 1019 Query: 280 ctcgctggcaaacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaacctt 339 || |||||||| || |||||||||||||| || ||| |||||||| || ||||||||| Sbjct: 1018 cttgctggcaaccgtctgaagaagtttactggtactgagggcaacctatgtctgaacctt 959 Query: 340 gggtgcctcatggcatagaaccctcctaatgc 371 ||||||||||| ||||||||||||||||||| Sbjct: 958 gggtgcctcatcacatagaaccctcctaatgc 927
>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence Length = 612 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 263 acagcatactgtccgtcctcgctggcaaacgcctgaagaagtt 305 ||||||| ||||| |||||||| |||| ||||||||||||||| Sbjct: 353 acagcatgctgtcagtcctcgccggcagacgcctgaagaagtt 395
>gb|AY104073.1| Zea mays PCO099302 mRNA sequence Length = 1254 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 263 acagcatactgtccgtcctcgctggcaaacgcctgaagaagtt 305 ||||||| ||||| |||||||| |||| ||||||||||||||| Sbjct: 989 acagcatgctgtcggtcctcgccggcagacgcctgaagaagtt 947
>gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2, complete sequence Length = 180221 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 atggcatagaaccctcctaat 369 ||||||||||||||||||||| Sbjct: 15003 atggcatagaaccctcctaat 14983
>ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 mRNA, complete cds Length = 2557 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 tgtgcctgaaccttgggtgcctca 349 |||||||||||||||| ||||||| Sbjct: 2466 tgtgcctgaaccttggatgcctca 2443
>gb|AY842481.1| Homo sapiens growth associated protein 43 (GAP43) gene, complete cds Length = 100848 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 ggctatgaaacagaatagca 430 |||||||||||||||||||| Sbjct: 85341 ggctatgaaacagaatagca 85360
>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence Length = 198636 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 acagacatggagtaattcta 223 |||||||||||||||||||| Sbjct: 133750 acagacatggagtaattcta 133769
>gb|AC132914.7| Mus musculus chromosome 1, clone RP24-318M2, complete sequence Length = 157264 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 aacagtcacaaataataacacagc 192 |||||||||||||||||| ||||| Sbjct: 129658 aacagtcacaaataataaaacagc 129635
>gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, complete sequence Length = 189666 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 acagacatggagtaattcta 223 |||||||||||||||||||| Sbjct: 164883 acagacatggagtaattcta 164864
>gb|BC070747.1| Xenopus laevis hypothetical protein MGC83751, mRNA (cDNA clone MGC:83751 IMAGE:6640465), complete cds Length = 2200 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gacagacatggagtaattct 222 |||||||||||||||||||| Sbjct: 923 gacagacatggagtaattct 904
>emb|CT030278.1| Xenopus tropicalis finished cDNA, clone TEgg068n01 Length = 2184 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gacagacatggagtaattct 222 |||||||||||||||||||| Sbjct: 896 gacagacatggagtaattct 877
>emb|X77646.2|TMPLA2ANI Trimeresurus mucrosquamatus phospholipase A2 antiplatelet protein mRNA Length = 445 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggcgttgaaggcaacctgtg 329 |||||||||||||||||||| Sbjct: 53 ggcgttgaaggcaacctgtg 72
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project) Length = 90020 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 tgtgcctgaaccttgggtgcctca 349 |||||||||||||||| ||||||| Sbjct: 57053 tgtgcctgaaccttggatgcctca 57030
>emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in linkage group 4, complete sequence Length = 150030 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 gatatttcatcaacatgctt 75 |||||||||||||||||||| Sbjct: 139743 gatatttcatcaacatgctt 139762
>gb|AC012598.16| Homo sapiens 3 BAC RP11-237K10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163538 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ggctatgaaacagaatagca 430 |||||||||||||||||||| Sbjct: 140912 ggctatgaaacagaatagca 140893
>gb|AC087465.5| Homo sapiens chromosome 15, clone RP11-94P14, complete sequence Length = 163320 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ttccaaaacctggcaagtca 93 |||||||||||||||||||| Sbjct: 22717 ttccaaaacctggcaagtca 22698
>ref|NM_207096.1| Danio rerio wingless-type MMTV integration site family, member 16 (wnt16), mRNA Length = 2005 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 gatatttcatcaacatgctt 75 |||||||||||||||||||| Sbjct: 1314 gatatttcatcaacatgctt 1295
>emb|BX830559.1|CNS09YQ0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZB04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2560 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 tgtgcctgaaccttgggtgcctca 349 |||||||||||||||| ||||||| Sbjct: 2470 tgtgcctgaaccttggatgcctca 2447
>gb|BC066432.1| Danio rerio wingless-type MMTV integration site family, member 16, mRNA (cDNA clone MGC:77293 IMAGE:6965366), complete cds Length = 2005 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 gatatttcatcaacatgctt 75 |||||||||||||||||||| Sbjct: 1314 gatatttcatcaacatgctt 1295 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,334,395 Number of Sequences: 3902068 Number of extensions: 3334395 Number of successful extensions: 87769 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87713 Number of HSP's gapped (non-prelim): 51 length of query: 469 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 447 effective length of database: 17,147,199,772 effective search space: 7664798298084 effective search space used: 7664798298084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)