>ARGC_XYLFT (Q87EL1) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 327

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 179 VSLT*NLWLNQMFHRQHTFRIYTTDFGSQPI 271
           ++LT NLWL +   R+H   +Y T + + P+
Sbjct: 219 ITLTANLWLQRPLTREHIKTLYATRYANDPL 249

>ARGC_XYLFA (Q9PEM6) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 333

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 179 VSLT*NLWLNQMFHRQHTFRIYTTDFGSQPI 271
           ++LT NLWL +   R+H   +Y T + + P+
Sbjct: 219 ITLTANLWLQRPLTREHIKILYATRYANDPL 249

>GLND_NITWN (Q3SWE0) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII|
           uridylyl-transferase) (Uridylyl-removing enzyme) (UTase)
          Length = 925

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 163 EDRIHRVLDMKPVVKPNVS*ATY-LQDLHNRFWFSTY 270
           E+R HR    + +V+PNV      L+DLH  FW + Y
Sbjct: 222 EERHHRAGQSRYLVEPNVKDGKGGLRDLHTLFWIAKY 258

>YHCT_BACSU (P54604) Hypothetical RNA pseudouridine synthase yhcT (EC 5.4.99.-)|
           (RNA-uridine isomerase) (RNA pseudouridylate synthase)
          Length = 302

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 331 VLLQRLLVNRMGRVYTVIKFNRLRTKIGCVNP 236
           +L Q+L    + R YT I   +LRTK G +NP
Sbjct: 156 ILDQQLEKKTLKRTYTAIAEGKLRTKKGTINP 187

>GRC3_ASPFU (Q4WID9) Protein grc3|
          Length = 455

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 304 CLPIVFARAQTIFKMVEPLCVPRNDLTANKLRDYLQSCVAITTGAKILDNPNWGTS 471
           CL +   R+  +      L  P   + A+KLRD L+    I     +LDNP+W  S
Sbjct: 307 CLGLALVRSIDVPSRKLELITP---IPASKLRDALEQGHGIVLVRGMLDNPSWAIS 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,753,541
Number of Sequences: 219361
Number of extensions: 1347057
Number of successful extensions: 2427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2427
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)