>HPS5_HUMAN (Q9UPZ3) Hermansky-Pudlak syndrome 5 protein (Alpha-integrin-binding|
            protein 63) (Ruby-eye protein 2 homolog) (Ru2)
          Length = 1129

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 288  RFDWLSVPVIL*NPPCSSSLVKG--RRPHSQLRSW 386
            R DWL + V L  PP +S++      RPHS L SW
Sbjct: 920  RLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW 954

>POLN_WEEV (P13896) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2466

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 12  SGLRNS*NMKVSSAGRKSSMPT-PVVPAV*CAIHTECCKGLWKWKIKKVFRERGKDNLT 185
           S L+ S   K+S   +K   PT  ++ +V   I+TE    L  W +  VF  +GK N T
Sbjct: 213 SDLQESRLGKLSILRKKRLQPTNKIIFSVGSTIYTEDRSLLRSWHLPNVFHLKGKSNFT 271

>DEGS_BACSU (P13799) Sensor protein degS (EC 2.7.13.3)|
          Length = 385

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 283 YDVKRELETCNRSFCALVAKDRTDIPHGLLTNDVRL 176
           +D+K   E  N+SF  L  K+R D+  G +T D ++
Sbjct: 336 FDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKI 371


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,554,964
Number of Sequences: 219361
Number of extensions: 1254290
Number of successful extensions: 3069
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3066
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)