ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CR356239.11| Zebrafish DNA sequence from clone DKEY-147F3 in... 44 0.12
2ref|NM_131386.1| Danio rerio DNA (cytosine-5-)-methyltransferase... 44 0.12
3dbj|AB196914.1| Danio rerio dnmt3 mRNA for DNA methyltransferase... 44 0.12
4gb|AC133572.35| Medicago truncatula clone mth2-10o11, complete s... 42 0.46
5gb|AC161269.4| Mus musculus BAC clone RP23-120K16 from chromosom... 40 1.8
6gb|AC116657.3| Mus musculus BAC clone RP23-289E18 from 15, compl... 40 1.8
7emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4,... 40 1.8
8emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4,... 40 1.8
9gb|AC100840.2| Homo sapiens chromosome 15, clone RP11-537K8, com... 40 1.8
10gb|AC021541.7| Homo sapiens chromosome 15, clone RP11-505L16, co... 40 1.8
11gb|AC154841.2| Mus musculus BAC clone RP23-61I24 from chromosome... 40 1.8
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
13gb|AC150560.5| Mus musculus BAC clone RP23-16I14 from 15, comple... 40 1.8
14emb|AL732339.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 1.8
15gb|AC165958.2| Mus musculus BAC clone RP23-417I20 from chromosom... 38 7.1
16gb|AC169508.1| Mus musculus BAC clone RP23-167I21 from chromosom... 38 7.1
17gb|AC115047.19| Mus musculus chromosome 10, clone RP24-330D16, c... 38 7.1
18gb|AY375238.1| Flavobacterium hibernum strain ACAM 376 L-ribulos... 38 7.1
19gb|AC102503.8| Mus musculus chromosome 16, clone RP24-383M8, com... 38 7.1
20emb|AL928688.3| Human DNA sequence from clone RP11-77N10 on chro... 38 7.1
21emb|AL441943.6| Human DNA sequence from clone RP11-69C17 on chro... 38 7.1
22emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica ser... 38 7.1
23emb|BX323870.13| Zebrafish DNA sequence from clone DKEYP-70G1 in... 38 7.1
24gb|AF250878.1| Salmonella typhi R27 plasmid complete sequence 38 7.1
25dbj|AB075523.1| Homo sapiens neuroblastoma cDNA, clone:Nbla10520... 38 7.1
26gb|AC026720.6| Homo sapiens chromosome 5 clone CTD-2193G21, comp... 38 7.1
27gb|AC008693.9| Homo sapiens chromosome 5 clone CTB-69A13, comple... 38 7.1
28gb|AC007038.6| Homo sapiens BAC clone RP11-260M2 from 2, complet... 38 7.1
29emb|BX294395.15| Zebrafish DNA sequence from clone CH211-220B11 ... 38 7.1
30emb|BX247887.6| Zebrafish DNA sequence from clone CH211-142L10, ... 38 7.1
31ref|NM_152519.2| Homo sapiens hypothetical protein FLJ23861 (FLJ... 38 7.1
32gb|AC092936.9| Homo sapiens 12 BAC RP11-286J13 (Roswell Park Can... 38 7.1
33gb|AF082890.1|AF082890 Solanum tuberosum cystathionine beta-lyas... 38 7.1
34emb|BX247882.6| Zebrafish DNA sequence from clone CH211-224P3 in... 38 7.1
35emb|AL807827.11| Zebrafish DNA sequence from clone CH211-220J6, ... 38 7.1
36dbj|AK074441.1| Homo sapiens cDNA FLJ23861 fis, clone LNG08328 38 7.1
37gb|AF105019.1|AF105019 Salmonella typhi plasmid R27 tra2 region,... 38 7.1
38emb|AL935036.4| Human DNA sequence from clone RP11-257E20 on chr... 38 7.1
39gb|AC145910.2| Gallus gallus BAC clone CH261-44O1 from chromosom... 38 7.1
40emb|AL671866.8| Mouse DNA sequence from clone RP23-59L24 on chro... 38 7.1 
>emb|CR356239.11| Zebrafish DNA sequence from clone DKEY-147F3 in linkage group 23,
              complete sequence
          Length = 110120

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 105    cagattcagatcagaaaactcaattt 130
              |||| |||||||||||||||||||||
Sbjct: 105581 cagaatcagatcagaaaactcaattt 105606
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>ref|NM_131386.1| Danio rerio DNA (cytosine-5-)-methyltransferase 3 (dnmt3), mRNA
          Length = 4882

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 105  cagattcagatcagaaaactcaattt 130
            |||| |||||||||||||||||||||
Sbjct: 1225 cagaatcagatcagaaaactcaattt 1200
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>dbj|AB196914.1| Danio rerio dnmt3 mRNA for DNA methyltransferase, complete cds
          Length = 4882

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 105  cagattcagatcagaaaactcaattt 130
            |||| |||||||||||||||||||||
Sbjct: 1225 cagaatcagatcagaaaactcaattt 1200
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>gb|AC133572.35| Medicago truncatula clone mth2-10o11, complete sequence
          Length = 108164

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 116   cagaaaactcaatttgagttt 136
             |||||||||||||||||||||
Sbjct: 65393 cagaaaactcaatttgagttt 65373
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>gb|AC161269.4| Mus musculus BAC clone RP23-120K16 from chromosome 15, complete
             sequence
          Length = 206234

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   atttgagtttcctgacaggt 146
             ||||||||||||||||||||
Sbjct: 44931 atttgagtttcctgacaggt 44912
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>gb|AC116657.3| Mus musculus BAC clone RP23-289E18 from 15, complete sequence
          Length = 184557

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   gaaaactcaatttgagtttc 137
             ||||||||||||||||||||
Sbjct: 23022 gaaaactcaatttgagtttc 23003
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>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
             complete sequence
          Length = 150416

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aggagtgtgcacatggtcct 29
             ||||||||||||||||||||
Sbjct: 15164 aggagtgtgcacatggtcct 15145
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>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
             complete sequence
          Length = 126659

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aggagtgtgcacatggtcct 29
             ||||||||||||||||||||
Sbjct: 50750 aggagtgtgcacatggtcct 50731
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>gb|AC100840.2| Homo sapiens chromosome 15, clone RP11-537K8, complete sequence
          Length = 174287

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   atcagaaaactcaatttgag 133
             ||||||||||||||||||||
Sbjct: 99453 atcagaaaactcaatttgag 99434
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>gb|AC021541.7| Homo sapiens chromosome 15, clone RP11-505L16, complete sequence
          Length = 194023

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    atcagaaaactcaatttgag 133
              ||||||||||||||||||||
Sbjct: 169250 atcagaaaactcaatttgag 169269
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>gb|AC154841.2| Mus musculus BAC clone RP23-61I24 from chromosome 14, complete sequence
          Length = 211666

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     caatgcaaaacagaaaactc 57
              ||||||||||||||||||||
Sbjct: 144227 caatgcaaaacagaaaactc 144208
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 10       aggagtgtgcacatggtcct 29
                ||||||||||||||||||||
Sbjct: 32655729 aggagtgtgcacatggtcct 32655710
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>gb|AC150560.5| Mus musculus BAC clone RP23-16I14 from 15, complete sequence
          Length = 208801

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    atttgagtttcctgacaggt 146
              ||||||||||||||||||||
Sbjct: 149367 atttgagtttcctgacaggt 149348
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>emb|AL732339.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0414F07, complete
             sequence
          Length = 50928

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aggagtgtgcacatggtcct 29
             ||||||||||||||||||||
Sbjct: 31804 aggagtgtgcacatggtcct 31785
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>gb|AC165958.2| Mus musculus BAC clone RP23-417I20 from chromosome 16, complete
             sequence
          Length = 186202

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     taggagtgtgcacatggtc 27
             |||||||||||||||||||
Sbjct: 50234 taggagtgtgcacatggtc 50216
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>gb|AC169508.1| Mus musculus BAC clone RP23-167I21 from chromosome 16, complete
            sequence
          Length = 211870

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 9    taggagtgtgcacatggtc 27
            |||||||||||||||||||
Sbjct: 2756 taggagtgtgcacatggtc 2738
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>gb|AC115047.19| Mus musculus chromosome 10, clone RP24-330D16, complete sequence
          Length = 193923

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 39     aatgcaaaacagaaaactcggtt 61
              |||||||||||||||||| ||||
Sbjct: 134416 aatgcaaaacagaaaacttggtt 134438
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>gb|AY375238.1| Flavobacterium hibernum strain ACAM 376 L-ribulose-5-phosphate
            4-epimerase (araD) gene, partial cds; L-arabinose
            isomerase (araA) gene, complete cds; and aldose
            1-epimerase (galM) gene, partial cds
          Length = 2987

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 64   agtttattcagatcaaaagctac 86
            ||||| |||||||||||||||||
Sbjct: 2209 agtttcttcagatcaaaagctac 2231
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>gb|AC102503.8| Mus musculus chromosome 16, clone RP24-383M8, complete sequence
          Length = 220467

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    acaatgcaaaacagaaaac 55
             |||||||||||||||||||
Sbjct: 90553 acaatgcaaaacagaaaac 90571
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>emb|AL928688.3| Human DNA sequence from clone RP11-77N10 on chromosome 10, complete
             sequence
          Length = 165910

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 36    cacaatgcaaaacagaaaa 54
             |||||||||||||||||||
Sbjct: 77051 cacaatgcaaaacagaaaa 77033
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>emb|AL441943.6| Human DNA sequence from clone RP11-69C17 on chromosome 10 Contains four
             novel genes (FLJ40155) (FLJ31539), complete sequence
          Length = 203234

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    acaatgcaaaacagaaaac 55
             |||||||||||||||||||
Sbjct: 24970 acaatgcaaaacagaaaac 24988
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>emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid
             pHCM1
          Length = 218160

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 106   agattcagatcagaaaactcaat 128
             |||||||||||||| ||||||||
Sbjct: 59863 agattcagatcagacaactcaat 59885
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>emb|BX323870.13| Zebrafish DNA sequence from clone DKEYP-70G1 in linkage group 5,
             complete sequence
          Length = 187646

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 47    acagaaaactcggtttgagtttattca 73
             ||||||||||| | |||||||||||||
Sbjct: 12911 acagaaaactctgattgagtttattca 12937
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>gb|AF250878.1| Salmonella typhi R27 plasmid complete sequence
          Length = 180461

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 106   agattcagatcagaaaactcaat 128
             |||||||||||||| ||||||||
Sbjct: 22216 agattcagatcagacaactcaat 22194
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>dbj|AB075523.1| Homo sapiens neuroblastoma cDNA, clone:Nbla10520, full insert
            sequence
          Length = 1879

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 118  gaaaactcaatttgagttt 136
            |||||||||||||||||||
Sbjct: 1735 gaaaactcaatttgagttt 1717
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>gb|AC026720.6| Homo sapiens chromosome 5 clone CTD-2193G21, complete sequence
          Length = 151090

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    cacaatgcaaaacagaaaa 54
             |||||||||||||||||||
Sbjct: 72172 cacaatgcaaaacagaaaa 72190
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>gb|AC008693.9| Homo sapiens chromosome 5 clone CTB-69A13, complete sequence
          Length = 203568

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    cacaatgcaaaacagaaaa 54
             |||||||||||||||||||
Sbjct: 45611 cacaatgcaaaacagaaaa 45629
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>gb|AC007038.6| Homo sapiens BAC clone RP11-260M2 from 2, complete sequence
          Length = 99031

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 118   gaaaactcaatttgagttt 136
             |||||||||||||||||||
Sbjct: 66010 gaaaactcaatttgagttt 65992
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>emb|BX294395.15| Zebrafish DNA sequence from clone CH211-220B11 in linkage group 5,
             complete sequence
          Length = 213232

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 47    acagaaaactcggtttgagtttattca 73
             ||||||||||| | |||||||||||||
Sbjct: 23352 acagaaaactctgattgagtttattca 23326
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>emb|BX247887.6| Zebrafish DNA sequence from clone CH211-142L10, complete sequence
          Length = 143903

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    tttgagtttattcagatca 78
             |||||||||||||||||||
Sbjct: 84256 tttgagtttattcagatca 84274
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>ref|NM_152519.2| Homo sapiens hypothetical protein FLJ23861 (FLJ23861), mRNA
          Length = 5410

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 118  gaaaactcaatttgagttt 136
            |||||||||||||||||||
Sbjct: 4002 gaaaactcaatttgagttt 4020
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>gb|AC092936.9| Homo sapiens 12 BAC RP11-286J13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 217112

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 127   atttgagtttcctgacagg 145
             |||||||||||||||||||
Sbjct: 55192 atttgagtttcctgacagg 55210
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>gb|AF082890.1|AF082890 Solanum tuberosum cystathionine beta-lyase (CbL) mRNA, complete cds;
            chloroplast gene for chloroplast product
          Length = 1626

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 130  tgagtttcctgacaggttc 148
            |||||||||||||||||||
Sbjct: 1166 tgagtttcctgacaggttc 1184
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>emb|BX247882.6| Zebrafish DNA sequence from clone CH211-224P3 in linkage group 14,
              complete sequence
          Length = 196155

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 105    cagattcagatcagaaaac 123
              |||||||||||||||||||
Sbjct: 145045 cagattcagatcagaaaac 145027
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>emb|AL807827.11| Zebrafish DNA sequence from clone CH211-220J6, complete sequence
          Length = 199141

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     cacaatgcaaaacagaaaa 54
              |||||||||||||||||||
Sbjct: 135800 cacaatgcaaaacagaaaa 135818
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>dbj|AK074441.1| Homo sapiens cDNA FLJ23861 fis, clone LNG08328
          Length = 3543

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 118  gaaaactcaatttgagttt 136
            |||||||||||||||||||
Sbjct: 2814 gaaaactcaatttgagttt 2832
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>gb|AF105019.1|AF105019 Salmonella typhi plasmid R27 tra2 region, complete sequence
          Length = 38245

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 106   agattcagatcagaaaactcaat 128
             |||||||||||||| ||||||||
Sbjct: 20124 agattcagatcagacaactcaat 20102
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>emb|AL935036.4| Human DNA sequence from clone RP11-257E20 on chromosome 10, complete
            sequence
          Length = 166004

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 36   cacaatgcaaaacagaaaa 54
            |||||||||||||||||||
Sbjct: 7542 cacaatgcaaaacagaaaa 7524
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>gb|AC145910.2| Gallus gallus BAC clone CH261-44O1 from chromosome unknown, complete
             sequence
          Length = 213878

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    tcagatcaaaagctaccaa 89
             |||||||||||||||||||
Sbjct: 57874 tcagatcaaaagctaccaa 57892
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>emb|AL671866.8| Mouse DNA sequence from clone RP23-59L24 on chromosome 4, complete
              sequence
          Length = 230447

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                             
Query: 99     agcaaacagattcagatcagaaaactcaatt 129
              |||||||| ||| || |||||||||||||||
Sbjct: 219367 agcaaacaaattaagctcagaaaactcaatt 219397


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,464,348
Number of Sequences: 3902068
Number of extensions: 1464348
Number of successful extensions: 111092
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110986
Number of HSP's gapped (non-prelim): 106
length of query: 148
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 127
effective length of database: 17,151,101,840
effective search space: 2178189933680
effective search space used: 2178189933680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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