>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98|
           kDa nucleoporin)
          Length = 937

 Score = 35.8 bits (81), Expect = 0.025
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 382 YKEMLVKKA*EQGVEFISFDAAKGEWKFKVKHFSSYGFAEAE 257
           Y+  L   + +QG +F  +    G W FKV HFS YG  +++
Sbjct: 847 YEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSD 888

>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor|
           [Contains: Nuclear pore complex protein Nup98
           (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore
           complex protein Nup96 (Nucleoporin Nup96) (96 kDa
           nucleoporin)]
          Length = 1729

 Score = 35.8 bits (81), Expect = 0.025
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 382 YKEMLVKKA*EQGVEFISFDAAKGEWKFKVKHFSSYGFAEAE 257
           Y+  L   + +QG +F  +    G W FKV HFS YG  +++
Sbjct: 848 YEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSD 889

>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore|
           protein NUP145) [Contains: Nucleoporin NUP145N
           (N-NUP145); Nucleoporin NUP145C (C-NUP145)]
          Length = 1317

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 343 VEFISFDAAKGEWKFKVKHFSSYGFAEAEVGLID 242
           + +IS++   G W FKV HFS +G    E   ID
Sbjct: 586 MNYISYNPFGGTWTFKVNHFSIWGLVNEEDAEID 619

>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)|
          Length = 1778

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 340 EFISFDAAKGEWKFKVKHFSSYGFAEAE 257
           EFI F+   G+W FKV+HFS YG  + E
Sbjct: 918 EFIDFN--DGKWIFKVQHFSRYGLLDDE 943

>CE290_HUMAN (O15078) Centrosomal protein Cep290|
          Length = 1539

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/85 (23%), Positives = 39/85 (45%)
 Frame = +3

Query: 18  LYFRQETTINSLIQSTHTHTHSTKLAQGCALHKQERFVQNIETKDKPHSIIQKTKASQ*E 197
           L ++ ++   SLI   H H  S +L++  AL K E     ++ K + +++  + K  + E
Sbjct: 248 LDYQAQSDEKSLIAKLHQHNVSLQLSEATALGKLESITSKLQ-KMEAYNLRLEQKLDEKE 306

Query: 198 SSEISYNFHGRGYMESIRPTSASAK 272
            +       GR   + +R T  S +
Sbjct: 307 QALYYARLEGRNRAKHLRQTIQSLR 331

>NARZ_ECOLI (P19319) Respiratory nitrate reductase 2 alpha chain (EC 1.7.99.4)|
          Length = 1245

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 72   HTHSTKLAQGCALHKQERFVQNIETKDKPHSIIQKTKASQ*ESSEISYN 218
            HTH        ALHK++  ++  + + +P  II     S  ES  +SYN
Sbjct: 981  HTH-------LALHKEDEKIRFRDIQAQPRKIISSPTWSGLESDHVSYN 1022

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 392  GGQVQGDAGEEGLGAGCGV 336
            G  V G AGE GLGAG G+
Sbjct: 964  GAGVAGGAGEAGLGAGAGL 982

>STAB2_RAT (Q8CFM6) Stabilin-2 precursor (Hyaluronan receptor for endocytosis)|
            [Contains: 175 kDa stabilin-2 (175 kDa hyaluronan
            receptor for endocytosis)] (Fragment)
          Length = 1431

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 148  KISHIALFKKQKRHNESPPKSVTTSMDGATWNQSGL 255
            +IS     + Q+RH +SPP + + +++   W  + L
Sbjct: 1376 RISQTLCMRPQRRHPQSPPVTPSQTLENRIWRTATL 1411


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,930,180
Number of Sequences: 219361
Number of extensions: 802154
Number of successful extensions: 1953
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1951
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)