Clone Name | rbastl39e07 |
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Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 153 bits (77), Expect = 5e-34 Identities = 122/137 (89%) Strand = Plus / Minus Query: 258 tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 317 ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| Sbjct: 3343077 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 3343018 Query: 318 gcagcgtcaaacgagatgaactccacaccctgctcctaagccttcttcaccagcatctcc 377 ||||| || || ||||||||||| |||||||||||| ||||||||||||||| |||||| Sbjct: 3343017 gcagcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctcc 3342958 Query: 378 ttgtacttgtccaccct 394 ||||||||| ||||||| Sbjct: 3342957 ttgtacttgcccaccct 3342941 Score = 139 bits (70), Expect = 8e-30 Identities = 121/138 (87%) Strand = Plus / Minus Query: 257 ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 316 |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| || Sbjct: 3351813 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 3351754 Query: 317 agcagcgtcaaacgagatgaactccacaccctgctcctaagccttcttcaccagcatctc 376 | || || || ||||||||||| |||||||||||| ||| ||||||||||||||||| Sbjct: 3351753 gacggcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctc 3351694 Query: 377 cttgtacttgtccaccct 394 |||||||||||||||||| Sbjct: 3351693 cttgtacttgtccaccct 3351676 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 aacttccatggacggggcta 235 |||||||||||||||||||| Sbjct: 18082524 aacttccatggacggggcta 18082505
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 153 bits (77), Expect = 5e-34 Identities = 122/137 (89%) Strand = Plus / Minus Query: 258 tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 317 ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| Sbjct: 3343022 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 3342963 Query: 318 gcagcgtcaaacgagatgaactccacaccctgctcctaagccttcttcaccagcatctcc 377 ||||| || || ||||||||||| |||||||||||| ||||||||||||||| |||||| Sbjct: 3342962 gcagcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctcc 3342903 Query: 378 ttgtacttgtccaccct 394 ||||||||| ||||||| Sbjct: 3342902 ttgtacttgcccaccct 3342886 Score = 139 bits (70), Expect = 8e-30 Identities = 121/138 (87%) Strand = Plus / Minus Query: 257 ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 316 |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| || Sbjct: 3351758 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 3351699 Query: 317 agcagcgtcaaacgagatgaactccacaccctgctcctaagccttcttcaccagcatctc 376 | || || || ||||||||||| |||||||||||| ||| ||||||||||||||||| Sbjct: 3351698 gacggcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctc 3351639 Query: 377 cttgtacttgtccaccct 394 |||||||||||||||||| Sbjct: 3351638 cttgtacttgtccaccct 3351621 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 aacttccatggacggggcta 235 |||||||||||||||||||| Sbjct: 18008845 aacttccatggacggggcta 18008826
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 153 bits (77), Expect = 5e-34 Identities = 122/137 (89%) Strand = Plus / Minus Query: 258 tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 317 ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| Sbjct: 22130 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 22071 Query: 318 gcagcgtcaaacgagatgaactccacaccctgctcctaagccttcttcaccagcatctcc 377 ||||| || || ||||||||||| |||||||||||| ||||||||||||||| |||||| Sbjct: 22070 gcagcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctcc 22011 Query: 378 ttgtacttgtccaccct 394 ||||||||| ||||||| Sbjct: 22010 ttgtacttgcccaccct 21994 Score = 139 bits (70), Expect = 8e-30 Identities = 121/138 (87%) Strand = Plus / Minus Query: 257 ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 316 |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| || Sbjct: 30866 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 30807 Query: 317 agcagcgtcaaacgagatgaactccacaccctgctcctaagccttcttcaccagcatctc 376 | || || || ||||||||||| |||||||||||| ||| ||||||||||||||||| Sbjct: 30806 gacggcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctc 30747 Query: 377 cttgtacttgtccaccct 394 |||||||||||||||||| Sbjct: 30746 cttgtacttgtccaccct 30729
>gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence Length = 1900 Score = 101 bits (51), Expect = 2e-18 Identities = 105/123 (85%) Strand = Plus / Minus Query: 273 ccataggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaacgag 332 ||||||| |||||| ||||||||| ||||||||||||| ||||| ||||| ||||| || Sbjct: 1733 ccataggcgctgaaatgcttcaccctgaacttccactctcccttggcagcatcaaaggac 1674 Query: 333 atgaactccacaccctgctcctaagccttcttcaccagcatctccttgtacttgtccacc 392 | |||||| | |||||||||| |||||||||| |||||||||| ||||| | |||||| Sbjct: 1673 acaaactccgcgccctgctcctccgccttcttcatcagcatctccctgtacctctccacc 1614 Query: 393 ctt 395 ||| Sbjct: 1613 ctt 1611
>gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence Length = 1871 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 276 taggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaacgagatg 335 |||| |||||||||||||||| ||||||||||||| ||||| ||||||| || || | Sbjct: 1565 taggcgctgaagtgcttcaccctgaacttccactctcccttgacagcgtcgaaggacaca 1506 Query: 336 aactccacaccctgctcctaagccttcttcaccagcatctccttgtac 383 ||||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct: 1505 aactctgcgccctgctcctccgccttcttcaccagcatctccctgtac 1458
>gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence Length = 625 Score = 71.9 bits (36), Expect = 1e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 273 ccataggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaa 328 ||||||| |||||||||||||||| ||||||||||||| ||||| ||||| ||||| Sbjct: 181 ccataggcgctgaagtgcttcaccctgaacttccactctcccttggcagcatcaaa 236
>gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds Length = 732 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 268 caaaaccataggagctgaagtgcttcaccttgaacttccactc 310 ||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 430 caaaatcatagcagctgaagtgcttcaccctgaacttccactc 388
>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete sequence Length = 109560 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 162 agcattattcaaaaaacaaaag 183 |||||||||||||||||||||| Sbjct: 45685 agcattattcaaaaaacaaaag 45664
>gb|DQ115799.1| Bacillus badius penicillin G acylase (pac) gene, complete cds; macronuclear Length = 2617 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 aaacaagaaagatttgtacaa 134 ||||||||||||||||||||| Sbjct: 311 aaacaagaaagatttgtacaa 331
>gb|AC006195.1|AC006195 Homo sapiens clone RP11-350H1 from 7p14-15, complete sequence Length = 150242 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 agcattattcaaaaaacaaaa 182 ||||||||||||||||||||| Sbjct: 45337 agcattattcaaaaaacaaaa 45357
>ref|XM_585718.2| PREDICTED: Bos taurus similar to tumor protein p53 inducible protein 3, transcript variant 1 (LOC508875), mRNA Length = 1957 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 362 cttcaccagcatctccttgtactt 385 |||||||||||||| ||||||||| Sbjct: 1226 cttcaccagcatctgcttgtactt 1203
>gb|AC147329.2| Pan troglodytes BAC clone RP43-21F14 from 7, complete sequence Length = 189770 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cttcagcaaaaccataggag 281 |||||||||||||||||||| Sbjct: 109436 cttcagcaaaaccataggag 109455
>gb|AY813463.1| Schistosoma japonicum SJCHGC01579 protein mRNA, complete cds Length = 1930 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 aagatttgtacaaaacatagaaac 145 |||| ||||||||||||||||||| Sbjct: 595 aagaattgtacaaaacatagaaac 572
>gb|AC145901.2| Pan troglodytes BAC clone RP43-9F20 from 7, complete sequence Length = 176187 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 cttcagcaaaaccataggag 281 |||||||||||||||||||| Sbjct: 5023 cttcagcaaaaccataggag 5004
>gb|AY494082.1| Homo sapiens cell division cycle 25B (CDC25B) gene, complete cds Length = 13771 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 gagatgaactccacaccctgctcc 353 |||||||||||||||| ||||||| Sbjct: 8403 gagatgaactccacactctgctcc 8380
>gb|AY223400.1| Schistosoma japonicum clone ZZZ33 mRNA sequence Length = 1951 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 aagatttgtacaaaacatagaaac 145 |||| ||||||||||||||||||| Sbjct: 596 aagaattgtacaaaacatagaaac 573
>gb|AC079589.6| Homo sapiens BAC clone RP11-589K23 from 7, complete sequence Length = 19706 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 cttcagcaaaaccataggag 281 |||||||||||||||||||| Sbjct: 1363 cttcagcaaaaccataggag 1344
>emb|AL109804.41|HS1009E24 Human DNA sequence from clone RP5-1009E24 on chromosome 20 Contains the 5' end of the ADAM33 gene for a disintegrin and metalloproteinase domain 33 protein, the SN gene encoding sialoadhesin, the C20orf60 gene, the C20orf27 gene, the C20orf28 gene, the CENPB gene for centromere protein B, the CDC25B gene for cell division cycle protein 25B, the C20orf29 gene, the 5' end of the gene for a novel protein (KIAA1271) and nine CpG islands, complete sequence Length = 185820 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 gagatgaactccacaccctgctcc 353 |||||||||||||||| ||||||| Sbjct: 127277 gagatgaactccacactctgctcc 127254
>emb|X78876.1|HVACXPII1 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-1 Length = 1252 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 243 tcaatcaggcctacttcagcttcagcaa 270 |||||||||||| | ||||||||||||| Sbjct: 408 tcaatcaggccttcctcagcttcagcaa 381
>emb|AL606829.13| Mouse DNA sequence from clone RP23-10M12 on chromosome 11 Contains a novel gene (MOR280-1) similar to the olfactory receptor family, a novel gene (D330012D11Rik), the Zfp62 gene for zinc finger protein 62, the Mgat1 gene for mannoside acetylglucosaminyltransferase 1, a novel gene (MOR256-24) similar to the olfactory receptor family, a novel gene (MOR256-25) similar to the olfactory receptor family, a novel gene (LOC216715) similar to the olfactory receptor MOR256 family, a novel gene (MOR256-27) similar to the olfactory receptor family, a novel gene (MOR256-2) similar to the olfactory receptor family and three CpG islands, complete sequence Length = 203286 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 aaataaacctctacttccga 29 |||||||||||||||||||| Sbjct: 116168 aaataaacctctacttccga 116149
>gb|AC012594.7| Homo sapiens BAC clone RP11-519L16 from 2, complete sequence Length = 166702 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 caaaacatagaaacgaaaga 151 |||||||||||||||||||| Sbjct: 52957 caaaacatagaaacgaaaga 52976
>gb|AY815317.1| Schistosoma japonicum clone SJCHGC01580 unknown mRNA Length = 720 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 aagatttgtacaaaacatagaaac 145 |||| ||||||||||||||||||| Sbjct: 403 aagaattgtacaaaacatagaaac 380
>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124294 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 aacttccatggacggggcta 235 |||||||||||||||||||| Sbjct: 3168 aacttccatggacggggcta 3187
>emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa0028O09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155927 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 aacttccatggacggggcta 235 |||||||||||||||||||| Sbjct: 36202 aacttccatggacggggcta 36183
>gb|AC157784.2| Mus musculus chromosome 18, clone RP24-163C18, complete sequence Length = 182283 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 ttcaccagcatctccttgta 382 |||||||||||||||||||| Sbjct: 96309 ttcaccagcatctccttgta 96328 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,220,912 Number of Sequences: 3902068 Number of extensions: 4220912 Number of successful extensions: 77865 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77753 Number of HSP's gapped (non-prelim): 108 length of query: 395 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 373 effective length of database: 17,147,199,772 effective search space: 6395905514956 effective search space used: 6395905514956 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)