ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 153 5e-34
3emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa... 153 5e-34
4gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence 101 2e-18
5gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence 88 3e-14
6gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence 72 1e-09
7gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds 62 1e-06
8gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thali... 44 0.34
9gb|DQ115799.1| Bacillus badius penicillin G acylase (pac) gene, ... 42 1.3
10gb|AC006195.1|AC006195 Homo sapiens clone RP11-350H1 from 7p14-1... 42 1.3
11ref|XM_585718.2| PREDICTED: Bos taurus similar to tumor protein ... 40 5.3
12gb|AC147329.2| Pan troglodytes BAC clone RP43-21F14 from 7, comp... 40 5.3
13gb|AY813463.1| Schistosoma japonicum SJCHGC01579 protein mRNA, c... 40 5.3
14gb|AC145901.2| Pan troglodytes BAC clone RP43-9F20 from 7, compl... 40 5.3
15gb|AY494082.1| Homo sapiens cell division cycle 25B (CDC25B) gen... 40 5.3
16gb|AY223400.1| Schistosoma japonicum clone ZZZ33 mRNA sequence 40 5.3
17gb|AC079589.6| Homo sapiens BAC clone RP11-589K23 from 7, comple... 40 5.3
18emb|AL109804.41|HS1009E24 Human DNA sequence from clone RP5-1009... 40 5.3
19emb|X78876.1|HVACXPII1 Hordeum vulgare L. (Alexis) mRNA for seri... 40 5.3
20emb|AL606829.13| Mouse DNA sequence from clone RP23-10M12 on chr... 40 5.3
21gb|AC012594.7| Homo sapiens BAC clone RP11-519L16 from 2, comple... 40 5.3
22gb|AY815317.1| Schistosoma japonicum clone SJCHGC01580 unknown mRNA 40 5.3
23emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.3
24emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.3
25gb|AC157784.2| Mus musculus chromosome 18, clone RP24-163C18, co... 40 5.3

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  153 bits (77), Expect = 5e-34
 Identities = 122/137 (89%)
 Strand = Plus / Minus

                                                                           
Query: 258     tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 317
               ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| 
Sbjct: 3343077 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 3343018

                                                                           
Query: 318     gcagcgtcaaacgagatgaactccacaccctgctcctaagccttcttcaccagcatctcc 377
               ||||| || || |||||||||||  |||||||||||| ||||||||||||||| ||||||
Sbjct: 3343017 gcagcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctcc 3342958

                                
Query: 378     ttgtacttgtccaccct 394
               ||||||||| |||||||
Sbjct: 3342957 ttgtacttgcccaccct 3342941



 Score =  139 bits (70), Expect = 8e-30
 Identities = 121/138 (87%)
 Strand = Plus / Minus

                                                                           
Query: 257     ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 316
               |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| ||
Sbjct: 3351813 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 3351754

                                                                           
Query: 317     agcagcgtcaaacgagatgaactccacaccctgctcctaagccttcttcaccagcatctc 376
                 | || || || |||||||||||  |||||||||||| ||| |||||||||||||||||
Sbjct: 3351753 gacggcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctc 3351694

                                 
Query: 377     cttgtacttgtccaccct 394
               ||||||||||||||||||
Sbjct: 3351693 cttgtacttgtccaccct 3351676



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 216      aacttccatggacggggcta 235
                ||||||||||||||||||||
Sbjct: 18082524 aacttccatggacggggcta 18082505



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  153 bits (77), Expect = 5e-34
 Identities = 122/137 (89%)
 Strand = Plus / Minus

                                                                           
Query: 258     tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 317
               ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| 
Sbjct: 3343022 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 3342963

                                                                           
Query: 318     gcagcgtcaaacgagatgaactccacaccctgctcctaagccttcttcaccagcatctcc 377
               ||||| || || |||||||||||  |||||||||||| ||||||||||||||| ||||||
Sbjct: 3342962 gcagcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctcc 3342903

                                
Query: 378     ttgtacttgtccaccct 394
               ||||||||| |||||||
Sbjct: 3342902 ttgtacttgcccaccct 3342886



 Score =  139 bits (70), Expect = 8e-30
 Identities = 121/138 (87%)
 Strand = Plus / Minus

                                                                           
Query: 257     ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 316
               |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| ||
Sbjct: 3351758 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 3351699

                                                                           
Query: 317     agcagcgtcaaacgagatgaactccacaccctgctcctaagccttcttcaccagcatctc 376
                 | || || || |||||||||||  |||||||||||| ||| |||||||||||||||||
Sbjct: 3351698 gacggcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctc 3351639

                                 
Query: 377     cttgtacttgtccaccct 394
               ||||||||||||||||||
Sbjct: 3351638 cttgtacttgtccaccct 3351621



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 216      aacttccatggacggggcta 235
                ||||||||||||||||||||
Sbjct: 18008845 aacttccatggacggggcta 18008826



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>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137936

 Score =  153 bits (77), Expect = 5e-34
 Identities = 122/137 (89%)
 Strand = Plus / Minus

                                                                         
Query: 258   tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 317
             ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| 
Sbjct: 22130 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 22071

                                                                         
Query: 318   gcagcgtcaaacgagatgaactccacaccctgctcctaagccttcttcaccagcatctcc 377
             ||||| || || |||||||||||  |||||||||||| ||||||||||||||| ||||||
Sbjct: 22070 gcagcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctcc 22011

                              
Query: 378   ttgtacttgtccaccct 394
             ||||||||| |||||||
Sbjct: 22010 ttgtacttgcccaccct 21994



 Score =  139 bits (70), Expect = 8e-30
 Identities = 121/138 (87%)
 Strand = Plus / Minus

                                                                         
Query: 257   ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 316
             |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| ||
Sbjct: 30866 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 30807

                                                                         
Query: 317   agcagcgtcaaacgagatgaactccacaccctgctcctaagccttcttcaccagcatctc 376
               | || || || |||||||||||  |||||||||||| ||| |||||||||||||||||
Sbjct: 30806 gacggcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctc 30747

                               
Query: 377   cttgtacttgtccaccct 394
             ||||||||||||||||||
Sbjct: 30746 cttgtacttgtccaccct 30729



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>gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence
          Length = 1900

 Score =  101 bits (51), Expect = 2e-18
 Identities = 105/123 (85%)
 Strand = Plus / Minus

                                                                        
Query: 273  ccataggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaacgag 332
            ||||||| |||||| ||||||||| ||||||||||||| ||||| ||||| ||||| || 
Sbjct: 1733 ccataggcgctgaaatgcttcaccctgaacttccactctcccttggcagcatcaaaggac 1674

                                                                        
Query: 333  atgaactccacaccctgctcctaagccttcttcaccagcatctccttgtacttgtccacc 392
            |  |||||| | ||||||||||  |||||||||| |||||||||| ||||| | ||||||
Sbjct: 1673 acaaactccgcgccctgctcctccgccttcttcatcagcatctccctgtacctctccacc 1614

               
Query: 393  ctt 395
            |||
Sbjct: 1613 ctt 1611



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>gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence
          Length = 1871

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 92/108 (85%)
 Strand = Plus / Minus

                                                                        
Query: 276  taggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaacgagatg 335
            |||| |||||||||||||||| ||||||||||||| |||||  ||||||| || || |  
Sbjct: 1565 taggcgctgaagtgcttcaccctgaacttccactctcccttgacagcgtcgaaggacaca 1506

                                                            
Query: 336  aactccacaccctgctcctaagccttcttcaccagcatctccttgtac 383
            |||||  | ||||||||||  ||||||||||||||||||||| |||||
Sbjct: 1505 aactctgcgccctgctcctccgccttcttcaccagcatctccctgtac 1458



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>gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence
          Length = 625

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 273 ccataggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaa 328
           ||||||| |||||||||||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 181 ccataggcgctgaagtgcttcaccctgaacttccactctcccttggcagcatcaaa 236



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>gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds
          Length = 732

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 268 caaaaccataggagctgaagtgcttcaccttgaacttccactc 310
           ||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct: 430 caaaatcatagcagctgaagtgcttcaccctgaacttccactc 388



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>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 109560

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 162   agcattattcaaaaaacaaaag 183
             ||||||||||||||||||||||
Sbjct: 45685 agcattattcaaaaaacaaaag 45664



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>gb|DQ115799.1| Bacillus badius penicillin G acylase (pac) gene, complete cds;
           macronuclear
          Length = 2617

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 aaacaagaaagatttgtacaa 134
           |||||||||||||||||||||
Sbjct: 311 aaacaagaaagatttgtacaa 331



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>gb|AC006195.1|AC006195 Homo sapiens clone RP11-350H1 from 7p14-15, complete sequence
          Length = 150242

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   agcattattcaaaaaacaaaa 182
             |||||||||||||||||||||
Sbjct: 45337 agcattattcaaaaaacaaaa 45357



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>ref|XM_585718.2| PREDICTED: Bos taurus similar to tumor protein p53 inducible protein
            3, transcript variant 1 (LOC508875), mRNA
          Length = 1957

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 362  cttcaccagcatctccttgtactt 385
            |||||||||||||| |||||||||
Sbjct: 1226 cttcaccagcatctgcttgtactt 1203



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>gb|AC147329.2| Pan troglodytes BAC clone RP43-21F14 from 7, complete sequence
          Length = 189770

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    cttcagcaaaaccataggag 281
              ||||||||||||||||||||
Sbjct: 109436 cttcagcaaaaccataggag 109455



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>gb|AY813463.1| Schistosoma japonicum SJCHGC01579 protein mRNA, complete cds
          Length = 1930

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 122 aagatttgtacaaaacatagaaac 145
           |||| |||||||||||||||||||
Sbjct: 595 aagaattgtacaaaacatagaaac 572



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>gb|AC145901.2| Pan troglodytes BAC clone RP43-9F20 from 7, complete sequence
          Length = 176187

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  cttcagcaaaaccataggag 281
            ||||||||||||||||||||
Sbjct: 5023 cttcagcaaaaccataggag 5004



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>gb|AY494082.1| Homo sapiens cell division cycle 25B (CDC25B) gene, complete cds
          Length = 13771

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 330  gagatgaactccacaccctgctcc 353
            |||||||||||||||| |||||||
Sbjct: 8403 gagatgaactccacactctgctcc 8380



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>gb|AY223400.1| Schistosoma japonicum clone ZZZ33 mRNA sequence
          Length = 1951

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 122 aagatttgtacaaaacatagaaac 145
           |||| |||||||||||||||||||
Sbjct: 596 aagaattgtacaaaacatagaaac 573



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>gb|AC079589.6| Homo sapiens BAC clone RP11-589K23 from 7, complete sequence
          Length = 19706

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  cttcagcaaaaccataggag 281
            ||||||||||||||||||||
Sbjct: 1363 cttcagcaaaaccataggag 1344



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>emb|AL109804.41|HS1009E24 Human DNA sequence from clone RP5-1009E24 on chromosome 20 Contains the
              5' end of the ADAM33 gene for a disintegrin and
              metalloproteinase domain 33 protein, the SN gene encoding
              sialoadhesin, the C20orf60 gene, the C20orf27 gene, the
              C20orf28 gene, the CENPB gene for centromere protein B, the
              CDC25B gene for cell division cycle protein 25B, the
              C20orf29 gene, the 5' end of the gene for a novel protein
              (KIAA1271) and nine CpG islands, complete sequence
          Length = 185820

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 330    gagatgaactccacaccctgctcc 353
              |||||||||||||||| |||||||
Sbjct: 127277 gagatgaactccacactctgctcc 127254



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>emb|X78876.1|HVACXPII1 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-1
          Length = 1252

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 243 tcaatcaggcctacttcagcttcagcaa 270
           |||||||||||| | |||||||||||||
Sbjct: 408 tcaatcaggccttcctcagcttcagcaa 381



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>emb|AL606829.13| Mouse DNA sequence from clone RP23-10M12 on chromosome 11 Contains a
              novel gene (MOR280-1) similar to the olfactory receptor
              family, a novel gene (D330012D11Rik), the Zfp62 gene for
              zinc finger protein 62, the Mgat1 gene for mannoside
              acetylglucosaminyltransferase 1, a novel gene (MOR256-24)
              similar to the olfactory receptor family, a novel gene
              (MOR256-25) similar to the olfactory receptor family, a
              novel gene (LOC216715) similar to the olfactory receptor
              MOR256 family, a novel gene (MOR256-27) similar to the
              olfactory receptor family, a novel gene (MOR256-2) similar
              to the olfactory receptor family and three CpG islands,
              complete sequence
          Length = 203286

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     aaataaacctctacttccga 29
              ||||||||||||||||||||
Sbjct: 116168 aaataaacctctacttccga 116149



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>gb|AC012594.7| Homo sapiens BAC clone RP11-519L16 from 2, complete sequence
          Length = 166702

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   caaaacatagaaacgaaaga 151
             ||||||||||||||||||||
Sbjct: 52957 caaaacatagaaacgaaaga 52976



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>gb|AY815317.1| Schistosoma japonicum clone SJCHGC01580 unknown mRNA
          Length = 720

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 122 aagatttgtacaaaacatagaaac 145
           |||| |||||||||||||||||||
Sbjct: 403 aagaattgtacaaaacatagaaac 380



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>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 124294

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  aacttccatggacggggcta 235
            ||||||||||||||||||||
Sbjct: 3168 aacttccatggacggggcta 3187



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>emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa0028O09 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155927

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   aacttccatggacggggcta 235
             ||||||||||||||||||||
Sbjct: 36202 aacttccatggacggggcta 36183



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>gb|AC157784.2| Mus musculus chromosome 18, clone RP24-163C18, complete sequence
          Length = 182283

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   ttcaccagcatctccttgta 382
             ||||||||||||||||||||
Sbjct: 96309 ttcaccagcatctccttgta 96328


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,220,912
Number of Sequences: 3902068
Number of extensions: 4220912
Number of successful extensions: 77865
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77753
Number of HSP's gapped (non-prelim): 108
length of query: 395
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 373
effective length of database: 17,147,199,772
effective search space: 6395905514956
effective search space used: 6395905514956
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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